Wall clock time and date at job start Sat Apr 11 2020 05:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86802 * 119.99768 * 2 1 4 4 H 1.48498 * 109.47131 * 240.00211 * 3 2 1 5 5 H 1.48501 * 109.47117 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46877 * 120.00291 * 3 2 1 7 7 C 1.38798 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00183 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99943 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99787 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46751 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00220 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99687 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99699 * 179.72193 * 13 11 10 15 15 C 1.53005 * 109.47116 * 175.41744 * 14 13 11 16 16 H 1.09001 * 112.96379 * 309.20387 * 15 14 13 17 17 C 1.53944 * 113.77166 * 177.52366 * 15 14 13 18 18 C 1.53943 * 86.29125 * 222.09420 * 17 15 14 19 19 N 1.47582 * 86.11832 * 23.60555 * 18 17 15 20 20 C 1.34775 * 134.49422 * 155.36205 * 19 18 17 21 21 O 1.21288 * 119.99922 * 185.05271 * 20 19 18 22 22 C 1.50700 * 119.99918 * 5.05094 * 20 19 18 23 23 C 1.53002 * 119.80623 * 250.98089 * 22 20 19 24 24 C 1.52995 * 60.65449 * 247.69202 * 23 22 20 25 25 H 1.08996 * 120.24809 * 112.14141 * 24 23 22 26 26 C 1.54478 * 118.06462 * 269.59129 * 24 23 22 27 27 O 1.44433 * 104.80359 * 86.83049 * 26 24 23 28 28 C 1.43874 * 105.56430 * 319.94177 * 27 26 24 29 29 H 0.96998 * 119.99977 * 359.97438 * 1 2 3 30 30 H 1.08990 * 109.47189 * 60.00233 * 10 9 7 31 31 H 1.08999 * 109.47435 * 299.99857 * 10 9 7 32 32 H 0.96995 * 119.99927 * 359.97438 * 13 11 10 33 33 H 1.08999 * 109.47537 * 295.41500 * 14 13 11 34 34 H 1.08996 * 109.47309 * 55.41997 * 14 13 11 35 35 H 1.08999 * 113.73796 * 336.43680 * 17 15 14 36 36 H 1.08997 * 113.73888 * 107.63833 * 17 15 14 37 37 H 1.08993 * 113.77291 * 137.90700 * 18 17 15 38 38 H 1.09001 * 113.76963 * 269.19442 * 18 17 15 39 39 H 1.09001 * 117.43178 * 355.36722 * 23 22 20 40 40 H 1.09001 * 117.43330 * 140.01404 * 23 22 20 41 41 H 1.09002 * 110.37487 * 205.65839 * 26 24 23 42 42 H 1.08998 * 110.37645 * 327.89044 * 26 24 23 43 43 H 1.08997 * 109.56025 * 281.16983 * 28 27 26 44 44 H 1.08996 * 110.91941 * 159.01606 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5022 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3305 -7.7150 0.0048 15 6 3.4979 -8.6972 -0.1112 16 1 4.1689 -8.4646 -0.9381 17 6 3.0729 -10.1758 -0.0542 18 6 4.2980 -10.3893 0.8532 19 7 4.1908 -8.9512 1.1669 20 6 4.5723 -8.1797 2.2040 21 8 4.2649 -7.0068 2.2326 22 6 5.3809 -8.7744 3.3281 23 6 4.7373 -8.9823 4.7006 24 6 5.8469 -7.9408 4.5427 25 1 5.6217 -6.8791 4.6428 26 6 7.3062 -8.3933 4.7708 27 8 7.7413 -8.8962 3.4887 28 6 6.6182 -9.6216 2.9572 29 1 -0.4850 0.8400 0.0004 30 1 3.1245 -3.7313 0.8894 31 1 3.1246 -3.7313 -0.8905 32 1 3.8010 -6.1834 -0.0004 33 1 1.7929 -7.8980 0.9351 34 1 1.6543 -7.8532 -0.8388 35 1 2.1201 -10.3393 0.4493 36 1 3.1402 -10.6890 -1.0134 37 1 4.1053 -11.0405 1.7057 38 1 5.2052 -10.6560 0.3109 39 1 3.7203 -8.6154 4.8391 40 1 4.9820 -9.8995 5.2362 41 1 7.9226 -7.5475 5.0756 42 1 7.3460 -9.1814 5.5228 43 1 6.5614 -10.6028 3.4284 44 1 6.6977 -9.7235 1.8749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001747627613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:38 Heat of formation + Delta-G solvation = -68.941014 kcal Electronic energy + Delta-G solvation = -27174.074349 eV Core-core repulsion = 23219.209266 eV Total energy + Delta-G solvation = -3954.865083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.08345 -40.99986 -40.22366 -38.64472 -35.76977 -35.56789 -34.62869 -31.93070 -31.11892 -29.51400 -28.79331 -27.67400 -26.46817 -24.78556 -24.18951 -22.35572 -21.85622 -21.56059 -20.02317 -19.58913 -18.32974 -17.84040 -17.65465 -17.54918 -16.92163 -16.81324 -16.53654 -16.40740 -16.12740 -15.79547 -15.63109 -15.10962 -15.01626 -14.64967 -14.50184 -14.38485 -13.92305 -13.72188 -13.54921 -13.24774 -13.21986 -13.07319 -12.89831 -12.87646 -12.68491 -12.44024 -12.25618 -12.06296 -11.78219 -11.75651 -11.37137 -11.17126 -11.00270 -10.80624 -10.54850 -10.36152 -10.13065 -9.76979 -8.72287 -8.38473 -6.17770 1.21327 1.36792 1.40927 1.42532 1.52687 1.56968 1.67253 2.23161 2.26952 2.35626 2.92936 2.94855 3.25170 3.32118 3.33648 3.37672 3.51256 3.71375 3.91676 3.93787 3.95275 4.00117 4.17329 4.18897 4.25455 4.34342 4.41429 4.43569 4.56241 4.60614 4.61533 4.68981 4.71799 4.73874 4.83020 5.00534 5.01684 5.04312 5.30320 5.36421 5.40799 5.67333 6.15388 6.41404 6.63738 7.01688 7.07453 7.18818 8.70934 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.002611 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.628567 B =10722.645709 C =12225.041555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 1.001 2.999 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.078 0.922 9 S -0.143 6.143 10 C -0.127 4.127 11 C 0.535 3.465 12 O -0.568 6.568 13 N -0.701 5.701 14 C 0.121 3.879 15 C 0.117 3.883 16 H 0.121 0.879 17 C -0.126 4.126 18 C 0.104 3.896 19 N -0.643 5.643 20 C 0.565 3.435 21 O -0.574 6.574 22 C -0.212 4.212 23 C -0.087 4.087 24 C -0.176 4.176 25 H 0.104 0.896 26 C 0.077 3.923 27 O -0.394 6.394 28 C 0.095 3.905 29 H 0.273 0.727 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.407 0.593 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.141 0.859 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.133 -31.060 5.344 35.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.189 1.189 7 C -0.700 4.700 8 H 0.096 0.904 9 S 0.084 5.916 10 C -0.279 4.279 11 C 0.320 3.680 12 O -0.448 6.448 13 N -0.353 5.353 14 C -0.003 4.003 15 C 0.014 3.986 16 H 0.139 0.861 17 C -0.164 4.164 18 C -0.017 4.017 19 N -0.379 5.379 20 C 0.355 3.645 21 O -0.453 6.453 22 C -0.215 4.215 23 C -0.124 4.124 24 C -0.195 4.195 25 H 0.122 0.878 26 C 0.001 3.999 27 O -0.314 6.314 28 C 0.019 3.981 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.243 0.757 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.142 0.858 37 H 0.122 0.878 38 H 0.133 0.867 39 H 0.113 0.887 40 H 0.159 0.841 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 15.130 -30.568 5.408 34.534 hybrid contribution 1.490 2.006 0.169 2.505 sum 16.620 -28.562 5.577 33.513 Atomic orbital electron populations 1.70175 1.07940 1.28818 1.47696 1.26164 0.96052 1.03329 0.93507 0.84973 0.77834 0.75486 0.79489 1.18490 1.19832 1.18898 1.23168 0.95242 0.92149 1.59431 0.90366 1.85423 1.10158 0.98955 1.97019 1.23324 1.03610 0.95080 1.05841 1.19953 0.86201 0.86657 0.75153 1.90653 1.17057 1.86138 1.50926 1.45650 1.09823 1.05256 1.74538 1.21589 0.96930 0.80131 1.01636 1.23412 0.92120 0.96798 0.86233 0.86148 1.23534 0.99093 0.90938 1.02825 1.23543 0.99302 0.79632 0.99196 1.50334 1.58090 1.11970 1.17475 1.19346 0.78063 0.84729 0.82401 1.90774 1.57151 1.18210 1.79211 1.23322 1.02392 1.06329 0.89451 1.23220 0.97045 1.00518 0.91594 1.24380 0.96000 0.98969 1.00114 0.87758 1.23093 0.90736 1.00102 0.85978 1.89064 1.36189 1.71796 1.34309 1.22835 0.80411 0.94001 1.00878 0.91809 0.88947 0.87513 0.75705 0.93892 0.89690 0.88747 0.85790 0.87815 0.86677 0.88692 0.84098 0.87983 0.88639 0.88219 0.88029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.11 13.22 21.65 0.29 -57.82 16 2 C 0.01 0.86 5.49 84.86 0.47 1.32 16 3 Si 1.00 45.78 29.55 68.60 2.03 47.81 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.55 -33.84 9.50 67.95 0.65 -33.20 16 8 H 0.08 4.52 7.80 -2.91 -0.02 4.49 16 9 S -0.14 -8.60 20.57 -56.49 -1.16 -9.77 16 10 C -0.13 -5.97 6.16 71.24 0.44 -5.53 16 11 C 0.53 23.37 7.85 87.66 0.69 24.06 16 12 O -0.57 -29.28 15.86 -3.03 -0.05 -29.33 16 13 N -0.70 -22.85 4.43 -463.05 -2.05 -24.90 16 14 C 0.12 3.07 5.21 86.38 0.45 3.52 16 15 C 0.12 1.68 4.29 45.09 0.19 1.87 16 16 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 17 C -0.13 -0.70 7.86 31.25 0.25 -0.45 16 18 C 0.10 0.46 7.40 86.48 0.64 1.10 16 19 N -0.64 -9.94 3.42 -813.91 -2.78 -12.72 16 20 C 0.56 13.07 7.57 87.66 0.66 13.73 16 21 O -0.57 -19.48 15.14 -3.06 -0.05 -19.53 16 22 C -0.21 -3.47 2.68 -51.91 -0.14 -3.61 16 23 C -0.09 -1.11 9.89 30.59 0.30 -0.81 16 24 C -0.18 -3.06 6.90 -9.78 -0.07 -3.13 16 25 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 26 C 0.08 1.02 7.45 72.48 0.54 1.56 16 27 O -0.39 -6.84 11.62 -148.98 -1.73 -8.57 16 28 C 0.10 1.10 6.70 72.48 0.49 1.58 16 29 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 30 H 0.09 4.26 8.14 -2.40 -0.02 4.24 16 31 H 0.11 4.52 8.14 -2.40 -0.02 4.50 16 32 H 0.41 12.18 7.67 -92.71 -0.71 11.47 16 33 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.09 0.67 8.10 -2.39 -0.02 0.65 16 36 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.12 -0.03 8.06 -2.39 -0.02 -0.05 16 39 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.10 1.02 7.14 -2.39 -0.02 1.00 16 Total: -1.00 -92.27 383.00 0.35 -91.92 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.31 Total: 20.89 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 5.55 Total: 2.03 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -4.55 Total: -95.45 kcal Atomic # 8 Polarization: -55.60 SS G_CDS: -1.82 Total: -57.43 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.77 kcal Total: -92.27 0.35 -91.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747627613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.976 kcal (2) G-P(sol) polarization free energy of solvation -92.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds