Wall clock time and date at job start Sat Apr 11 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48500 * 109.47043 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99745 * 3 2 1 6 6 H 1.48504 * 109.47465 * 60.00198 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05814 * 359.63188 * 13 11 10 15 15 C 1.53760 * 87.88929 * 152.95955 * 14 13 11 16 16 C 1.53004 * 114.26505 * 139.79059 * 15 14 13 17 17 N 1.46500 * 109.46740 * 91.47859 * 16 15 14 18 18 C 1.34776 * 119.99541 * 179.97438 * 17 16 15 19 19 O 1.21736 * 120.00238 * 0.02562 * 18 17 16 20 20 C 1.41806 * 119.99566 * 179.97438 * 18 17 16 21 21 C 1.33451 * 118.78215 * 180.02562 * 20 18 17 22 22 O 1.34353 * 123.08001 * 180.41376 * 21 20 18 23 23 C 1.45362 * 117.47696 * 343.65304 * 22 21 20 24 24 C 1.53481 * 108.26392 * 47.47392 * 23 22 21 25 25 C 1.50410 * 118.78606 * 359.73333 * 20 18 17 26 26 C 1.47065 * 136.05752 * 180.02562 * 13 11 10 27 27 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 29 29 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 30 30 H 1.09001 * 113.47005 * 267.69331 * 14 13 11 31 31 H 1.09003 * 113.46723 * 38.13512 * 14 13 11 32 32 H 1.09001 * 114.39663 * 272.68097 * 15 14 13 33 33 H 1.09000 * 109.46950 * 211.47918 * 16 15 14 34 34 H 1.09002 * 109.47197 * 331.48005 * 16 15 14 35 35 H 0.97004 * 120.00077 * 0.02562 * 17 16 15 36 36 H 1.08005 * 118.46451 * 0.39247 * 21 20 18 37 37 H 1.08997 * 109.70409 * 167.16897 * 23 22 21 38 38 H 1.08993 * 109.70270 * 287.74049 * 23 22 21 39 39 H 1.09000 * 109.70784 * 56.99289 * 24 23 22 40 40 H 1.09008 * 109.70207 * 177.60441 * 24 23 22 41 41 H 1.09000 * 109.45613 * 282.37417 * 25 20 18 42 42 H 1.08997 * 109.46018 * 42.32431 * 25 20 18 43 43 H 1.09001 * 113.46952 * 321.86856 * 26 13 11 44 44 H 1.08996 * 113.46849 * 92.31026 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 4.3052 -6.5116 -0.0271 15 6 4.0986 -7.8632 0.6762 16 6 5.0133 -8.9811 0.1713 17 7 6.2358 -9.0134 0.9779 18 6 7.1936 -9.9239 0.7135 19 8 7.0431 -10.7192 -0.1958 20 6 8.3772 -9.9549 1.4939 21 6 9.3100 -10.8663 1.2107 22 8 10.4588 -10.9779 1.8983 23 6 10.8484 -9.8585 2.7398 24 6 9.6296 -9.4344 3.5707 25 6 8.5379 -8.9550 2.6060 26 6 2.7297 -7.8092 -0.0165 27 1 -0.4851 0.8400 -0.0004 28 1 3.1212 -3.7293 -0.8992 29 1 3.1279 -3.7332 0.8807 30 1 4.7224 -6.6035 -1.0299 31 1 4.8324 -5.7788 0.5838 32 1 4.0523 -7.8025 1.7636 33 1 4.4977 -9.9378 0.2545 34 1 5.2709 -8.7965 -0.8716 35 1 6.3556 -8.3799 1.7027 36 1 9.1330 -11.5462 0.3904 37 1 11.6581 -10.1619 3.4033 38 1 11.1762 -9.0268 2.1163 39 1 9.2664 -10.2833 4.1501 40 1 9.9075 -8.6222 4.2425 41 1 8.8173 -7.9881 2.1874 42 1 7.5960 -8.8580 3.1460 43 1 1.9144 -8.1821 0.6034 44 1 2.7319 -8.2428 -1.0165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759236348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:16 Heat of formation + Delta-G solvation = -86.413077 kcal Electronic energy + Delta-G solvation = -25802.506062 eV Core-core repulsion = 21846.883334 eV Total energy + Delta-G solvation = -3955.622729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.75303 -41.34449 -40.05502 -39.01676 -35.85322 -34.99449 -34.60337 -32.66714 -32.18716 -30.21047 -27.75808 -27.16496 -26.85601 -26.62887 -24.68898 -22.27683 -22.11509 -20.45945 -19.75911 -19.53686 -18.89418 -18.01578 -17.70379 -17.05826 -16.90819 -16.85651 -16.69724 -16.51777 -16.06750 -15.97580 -15.71916 -15.12542 -14.96170 -14.65274 -14.53187 -14.33827 -14.05417 -13.90726 -13.67792 -13.56814 -13.42980 -13.22615 -13.03287 -12.92234 -12.60811 -12.40255 -12.25162 -11.78213 -11.73249 -11.66945 -11.58375 -11.17341 -11.00925 -10.85883 -10.30629 -10.09711 -9.80106 -9.44345 -8.70421 -8.36216 -6.15426 0.40074 1.19332 1.41230 1.42180 1.52702 1.56342 1.96106 2.17633 2.25645 2.38078 2.46734 2.98034 3.17917 3.24751 3.61601 3.75266 3.77264 3.81924 3.98576 4.04443 4.15165 4.23880 4.24098 4.31407 4.41715 4.43175 4.46402 4.56657 4.59842 4.61783 4.76854 4.77843 4.82108 4.88633 4.97836 5.13235 5.21659 5.21884 5.27233 5.40348 5.51377 6.18458 6.22955 6.57843 6.64289 7.04822 7.07242 7.31781 8.73354 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.001848 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.481316 B =15149.053039 C =16612.457141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.153 6.153 10 C -0.117 4.117 11 C 0.559 3.441 12 O -0.570 6.570 13 N -0.654 5.654 14 C 0.101 3.899 15 C -0.108 4.108 16 C 0.139 3.861 17 N -0.716 5.716 18 C 0.568 3.432 19 O -0.604 6.604 20 C -0.327 4.327 21 C 0.161 3.839 22 O -0.323 6.323 23 C 0.043 3.957 24 C -0.154 4.154 25 C -0.075 4.075 26 C 0.106 3.894 27 H 0.271 0.729 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.414 0.586 36 H 0.170 0.830 37 H 0.129 0.871 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.053 -21.007 7.614 34.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.823 3.177 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.268 4.268 11 C 0.348 3.652 12 O -0.449 6.449 13 N -0.390 5.390 14 C -0.020 4.020 15 C -0.128 4.128 16 C 0.015 3.985 17 N -0.369 5.369 18 C 0.361 3.639 19 O -0.489 6.489 20 C -0.332 4.332 21 C 0.093 3.907 22 O -0.233 6.233 23 C -0.030 4.030 24 C -0.191 4.191 25 C -0.112 4.112 26 C -0.017 4.017 27 H 0.080 0.920 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.144 0.856 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.252 0.748 36 H 0.187 0.813 37 H 0.147 0.853 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.128 0.872 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 24.023 -21.702 7.024 33.128 hybrid contribution 0.978 1.622 0.046 1.894 sum 25.001 -20.081 7.070 32.837 Atomic orbital electron populations 1.70191 1.08024 1.28617 1.47957 1.26168 0.96003 1.03423 0.93691 0.84871 0.78618 0.76132 0.78097 1.17889 1.19986 1.19830 1.23212 0.95324 0.91767 1.58923 0.89837 1.85626 1.10551 0.99377 1.97040 1.23251 1.03400 0.93749 1.06410 1.19646 0.85030 0.85540 0.74939 1.90693 1.17145 1.85640 1.51390 1.49566 1.09722 1.06528 1.73174 1.23511 0.79655 0.96628 1.02255 1.23085 0.94014 0.93832 1.01843 1.21119 0.84094 0.98068 0.95255 1.45769 1.18484 1.35915 1.36693 1.16891 0.83874 0.80070 0.83062 1.90805 1.81320 1.42370 1.34390 1.20108 0.97801 1.08455 1.06814 1.22954 0.83150 0.94221 0.90416 1.86277 1.36549 1.43653 1.56859 1.23892 0.98165 0.87889 0.93050 1.22228 0.95226 1.03413 0.98274 1.20392 1.00681 0.96744 0.93368 1.23133 0.97821 0.78788 1.01911 0.91950 0.87753 0.87350 0.87899 0.88507 0.85597 0.90863 0.90921 0.74821 0.81310 0.85340 0.89863 0.90883 0.87213 0.89471 0.89263 0.90625 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.00 13.22 21.65 0.29 -55.71 16 2 C 0.01 0.67 5.49 84.86 0.47 1.14 16 3 Si 1.00 43.22 29.55 68.60 2.03 45.24 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.54 -31.04 9.50 67.95 0.65 -30.39 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 10 C -0.12 -4.74 5.98 71.24 0.43 -4.32 16 11 C 0.56 21.62 8.10 87.66 0.71 22.33 16 12 O -0.57 -27.77 16.64 -3.02 -0.05 -27.82 16 13 N -0.65 -17.07 3.69 -857.74 -3.16 -20.24 16 14 C 0.10 1.52 8.00 83.26 0.67 2.19 16 15 C -0.11 -1.25 4.11 -10.36 -0.04 -1.30 16 16 C 0.14 1.65 5.59 86.38 0.48 2.14 16 17 N -0.72 -8.14 5.47 -471.97 -2.58 -10.73 16 18 C 0.57 9.75 7.53 85.12 0.64 10.39 16 19 O -0.60 -15.35 15.92 -4.46 -0.07 -15.43 16 20 C -0.33 -4.17 5.69 -20.16 -0.11 -4.29 16 21 C 0.16 2.21 10.46 66.74 0.70 2.91 16 22 O -0.32 -3.84 10.48 -76.21 -0.80 -4.63 16 23 C 0.04 0.22 7.15 72.14 0.52 0.73 16 24 C -0.15 -0.61 6.24 30.88 0.19 -0.42 16 25 C -0.07 -0.46 5.10 29.88 0.15 -0.31 16 26 C 0.11 1.99 8.19 83.18 0.68 2.67 16 27 H 0.27 15.41 8.31 -92.71 -0.77 14.63 16 28 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 29 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 30 H 0.10 1.31 7.88 -2.39 -0.02 1.29 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 0.96 7.81 -2.39 -0.02 0.94 16 35 H 0.41 2.55 6.58 -92.71 -0.61 1.94 16 36 H 0.17 2.53 7.21 -2.91 -0.02 2.51 16 37 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.11 0.00 8.14 -2.38 -0.02 -0.02 16 41 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.09 0.37 7.14 -2.39 -0.02 0.35 16 43 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.10 1.62 8.10 -2.39 -0.02 1.60 16 Total: -1.00 -86.29 384.39 1.02 -85.27 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.41 Total: 10.34 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 6.12 Total: 3.47 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -5.46 Total: -86.68 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -0.92 Total: -47.88 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -86.29 1.02 -85.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759236348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.144 kcal (2) G-P(sol) polarization free energy of solvation -86.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds