Wall clock time and date at job start Sat Apr 11 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.47185 * 2 1 4 4 N 1.29389 * 124.70865 * 89.99768 * 3 2 1 5 5 C 1.30913 * 117.46933 * 179.97438 * 4 3 2 6 6 C 1.50692 * 123.03367 * 180.02562 * 5 4 3 7 7 C 1.36764 * 113.93040 * 0.02562 * 5 4 3 8 8 C 1.46505 * 126.17538 * 179.97438 * 7 5 4 9 9 O 1.21611 * 120.00311 * 359.97438 * 8 7 5 10 10 O 1.34882 * 119.99617 * 179.97438 * 8 7 5 11 11 C 1.45194 * 116.99651 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47239 * 329.99918 * 11 10 8 13 13 C 1.52997 * 109.47339 * 90.00160 * 11 10 8 14 14 C 1.50708 * 109.47032 * 210.00261 * 11 10 8 15 15 O 1.21280 * 119.99888 * 354.99873 * 14 11 10 16 16 N 1.34777 * 119.99928 * 174.99982 * 14 11 10 17 17 C 1.46496 * 119.99889 * 359.97438 * 16 14 11 18 18 C 1.46500 * 119.99779 * 179.97438 * 16 14 11 19 19 C 1.50694 * 109.46954 * 89.99836 * 18 16 14 20 20 H 1.08003 * 120.00102 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99994 * 179.97438 * 19 18 16 22 22 N 1.31509 * 120.00205 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00154 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46987 * 90.00313 * 23 21 19 25 25 H 1.48498 * 109.47209 * 210.00317 * 23 21 19 26 26 H 1.48500 * 109.47126 * 330.00657 * 23 21 19 27 27 S 1.70928 * 124.70526 * 270.24761 * 3 2 1 28 28 H 1.08997 * 109.46790 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47172 * 300.00576 * 1 2 3 30 30 H 1.09006 * 109.46780 * 59.99926 * 1 2 3 31 31 H 1.09003 * 109.46851 * 239.99859 * 2 1 3 32 32 H 1.08997 * 109.46666 * 120.00018 * 2 1 3 33 33 H 1.09005 * 109.47444 * 269.97695 * 6 5 4 34 34 H 1.08999 * 109.47618 * 29.98235 * 6 5 4 35 35 H 1.09003 * 109.47063 * 149.98091 * 6 5 4 36 36 H 1.09002 * 109.47153 * 59.99705 * 13 11 10 37 37 H 1.09001 * 109.46832 * 299.99896 * 13 11 10 38 38 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 39 39 H 1.09003 * 109.47373 * 90.00178 * 17 16 14 40 40 H 1.09005 * 109.46584 * 209.99714 * 17 16 14 41 41 H 1.08999 * 109.47384 * 329.99408 * 17 16 14 42 42 H 1.08993 * 109.47001 * 209.99914 * 18 16 14 43 43 H 1.09002 * 109.47216 * 330.00108 * 18 16 14 44 44 H 0.97004 * 120.00789 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2780 2.1154 1.0637 5 6 2.7114 3.3397 0.8987 6 6 3.0367 4.2579 2.0484 7 6 2.8423 3.7100 -0.4113 8 6 3.3027 5.0122 -0.9000 9 8 3.6104 5.8840 -0.1100 10 8 3.3852 5.2440 -2.2262 11 6 3.8498 6.5565 -2.6382 12 1 3.5656 7.2945 -1.8880 13 6 5.3728 6.5363 -2.7825 14 6 3.2246 6.9183 -3.9609 15 8 2.5349 6.1108 -4.5467 16 7 3.4320 8.1392 -4.4927 17 6 4.2646 9.1147 -3.7848 18 6 2.8247 8.4907 -5.7787 19 6 1.4672 9.1011 -5.5431 20 1 1.0943 9.2161 -4.5360 21 6 0.7017 9.5137 -6.6130 22 7 1.1559 9.3741 -7.8392 23 14 -0.9808 10.2710 -6.3208 24 1 -0.8423 11.7421 -6.1717 25 1 -1.8656 9.9717 -7.4752 26 1 -1.5718 9.7015 -5.0833 27 16 2.3511 2.3404 -1.4052 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.1464 4.8226 2.3256 34 1 3.3726 3.6677 2.9010 35 1 3.8263 4.9477 1.7503 36 1 5.6569 5.7982 -3.5326 37 1 5.8249 6.2746 -1.8258 38 1 5.7215 7.5215 -3.0922 39 1 5.3024 9.0023 -4.0986 40 1 3.9215 10.1226 -4.0184 41 1 4.1894 8.9452 -2.7107 42 1 3.4607 9.2083 -6.2968 43 1 2.7186 7.5930 -6.3879 44 1 0.6172 9.6640 -8.5921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051514225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:36 Heat of formation + Delta-G solvation = -77.707882 kcal Electronic energy + Delta-G solvation = -27124.061911 eV Core-core repulsion = 23168.816668 eV Total energy + Delta-G solvation = -3955.245243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.86303 -40.04187 -38.86674 -36.45383 -34.95647 -34.62881 -32.92735 -31.73730 -31.10472 -28.83663 -27.71539 -26.20119 -25.84809 -24.59886 -23.24075 -22.26772 -21.78110 -19.75417 -18.94126 -18.33598 -17.35479 -16.73655 -16.54420 -16.25111 -15.89370 -15.49776 -15.28606 -14.90130 -14.61112 -14.36708 -14.17335 -13.79087 -13.59458 -13.29408 -13.25335 -12.91167 -12.78447 -12.42891 -12.29533 -12.22349 -12.13052 -12.06469 -11.71925 -11.59300 -11.56842 -11.46032 -11.22354 -10.94245 -10.76819 -10.65257 -10.58985 -10.19284 -9.99166 -9.77463 -9.67743 -8.99844 -8.94834 -8.47172 -7.76339 -6.08184 -4.13187 -0.12779 0.92113 1.38382 2.03245 2.35629 2.71853 3.22188 3.28554 3.35349 3.40620 3.59673 3.85104 4.41246 4.41670 4.57597 4.68678 4.74483 4.76616 4.85083 4.96290 5.04538 5.12731 5.26532 5.39633 5.44113 5.46962 5.47284 5.52237 5.60529 5.62093 5.64666 5.78133 5.82058 5.94537 6.02304 6.19052 6.32621 6.94833 7.31799 7.35707 7.42813 7.58325 7.87733 8.17436 8.25228 8.81226 8.96099 9.51985 10.99969 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013266 B = 0.002796 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.206626 B =10012.565459 C =11022.969465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.051 4.051 3 C 0.053 3.947 4 N -0.481 5.481 5 C 0.163 3.837 6 C -0.092 4.092 7 C -0.301 4.301 8 C 0.548 3.452 9 O -0.496 6.496 10 O -0.322 6.322 11 C 0.072 3.928 12 H 0.108 0.892 13 C -0.170 4.170 14 C 0.509 3.491 15 O -0.519 6.519 16 N -0.595 5.595 17 C 0.076 3.924 18 C 0.247 3.753 19 C -0.529 4.529 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.894 5.894 23 Si 0.899 3.101 24 H -0.280 1.280 25 H -0.284 1.284 26 H -0.274 1.274 27 S 0.234 5.766 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.037 0.963 43 H 0.046 0.954 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.644 -14.860 17.074 23.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.092 4.092 3 C -0.221 4.221 4 N -0.196 5.196 5 C 0.023 3.977 6 C -0.150 4.150 7 C -0.423 4.423 8 C 0.391 3.609 9 O -0.386 6.386 10 O -0.237 6.237 11 C 0.013 3.987 12 H 0.126 0.874 13 C -0.228 4.228 14 C 0.293 3.707 15 O -0.394 6.394 16 N -0.329 5.329 17 C -0.068 4.068 18 C 0.128 3.872 19 C -0.568 4.568 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.533 5.533 23 Si 0.726 3.274 24 H -0.206 1.206 25 H -0.210 1.210 26 H -0.199 1.199 27 S 0.494 5.506 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.145 -15.469 16.083 23.145 hybrid contribution -0.720 1.268 0.817 1.672 sum 5.425 -14.201 16.900 22.731 Atomic orbital electron populations 1.21806 0.92975 1.02944 1.03069 1.20343 0.97115 0.86988 1.04745 1.27654 1.00020 1.02088 0.92318 1.66090 1.16381 1.05638 1.31470 1.20993 0.93275 0.90522 0.92934 1.20692 1.03746 0.97042 0.93556 1.24673 1.21145 0.99393 0.97138 1.19311 0.74415 0.85778 0.81366 1.90818 1.46778 1.44727 1.56302 1.86695 1.77705 1.35812 1.23464 1.22696 0.95646 0.82996 0.97320 0.87405 1.22292 0.92181 1.04781 1.03508 1.19728 0.82051 0.83127 0.85816 1.90707 1.38075 1.49076 1.61549 1.48068 1.49275 1.11480 1.24038 1.21856 0.94237 0.94699 0.96036 1.19359 0.92752 0.96993 0.78076 1.21421 1.01790 1.40372 0.93219 0.92421 1.24928 0.98348 0.95839 0.94904 1.69924 1.38043 1.47222 0.98098 0.86485 0.83714 0.79229 0.77954 1.20576 1.21008 1.19875 1.84437 1.55513 1.02008 1.08594 0.91013 0.91791 0.92005 0.89098 0.88382 0.89724 0.90372 0.88289 0.90913 0.91202 0.89108 0.93069 0.90232 0.92321 0.94553 0.93619 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.90 37.16 0.37 -0.56 16 2 C -0.05 -0.34 6.51 -27.88 -0.18 -0.52 16 3 C 0.05 0.54 6.63 -13.31 -0.09 0.45 16 4 N -0.48 -5.79 10.49 -7.47 -0.08 -5.87 16 5 C 0.16 2.08 6.83 -83.52 -0.57 1.51 16 6 C -0.09 -0.98 9.72 36.00 0.35 -0.63 16 7 C -0.30 -4.21 6.52 -36.79 -0.24 -4.45 16 8 C 0.55 8.68 7.90 34.06 0.27 8.95 16 9 O -0.50 -7.95 13.59 -19.35 -0.26 -8.21 16 10 O -0.32 -5.65 9.32 -47.66 -0.44 -6.09 16 11 C 0.07 1.21 2.17 -27.88 -0.06 1.15 16 12 H 0.11 1.72 6.15 -51.93 -0.32 1.40 16 13 C -0.17 -2.21 9.28 37.16 0.34 -1.87 16 14 C 0.51 10.93 7.10 -10.98 -0.08 10.85 16 15 O -0.52 -13.49 16.09 -14.05 -0.23 -13.72 16 16 N -0.59 -12.56 2.86 -182.96 -0.52 -13.08 16 17 C 0.08 1.16 8.92 59.84 0.53 1.70 16 18 C 0.25 6.40 5.16 -5.20 -0.03 6.37 16 19 C -0.53 -14.99 9.39 -34.44 -0.32 -15.32 16 20 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 21 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 23 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 27 S 0.23 2.76 23.04 -107.50 -2.48 0.28 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.12 6.06 -51.93 -0.31 0.81 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.03 5.12 -51.93 -0.27 0.76 16 39 H 0.05 0.65 7.02 -51.93 -0.36 0.28 16 40 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 41 H 0.06 0.76 6.08 -51.93 -0.32 0.45 16 42 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 43 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 384.39 15.07 5.79 5.79 Total: -1.00 -34.93 384.39 -8.46 -43.38 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -6.15 Total: -2.97 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 0.20 Total: 9.30 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.14 Total: -44.62 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.93 Total: -28.02 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -2.48 Total: 0.28 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.93 -8.46 -43.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051514225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.324 kcal (2) G-P(sol) polarization free energy of solvation -34.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds