Wall clock time and date at job start Sat Apr 11 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.47185 * 2 1 4 4 N 1.29389 * 124.70865 * 89.99768 * 3 2 1 5 5 C 1.30913 * 117.46933 * 179.97438 * 4 3 2 6 6 C 1.50692 * 123.03367 * 180.02562 * 5 4 3 7 7 C 1.36764 * 113.93040 * 0.02562 * 5 4 3 8 8 C 1.46505 * 126.17538 * 179.97438 * 7 5 4 9 9 O 1.21611 * 120.00311 * 359.97438 * 8 7 5 10 10 O 1.34882 * 119.99617 * 179.97438 * 8 7 5 11 11 C 1.45194 * 116.99651 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47239 * 329.99918 * 11 10 8 13 13 C 1.52997 * 109.47339 * 90.00160 * 11 10 8 14 14 C 1.50708 * 109.47032 * 210.00261 * 11 10 8 15 15 O 1.21280 * 119.99888 * 354.99873 * 14 11 10 16 16 N 1.34777 * 119.99928 * 174.99982 * 14 11 10 17 17 C 1.46496 * 119.99889 * 359.97438 * 16 14 11 18 18 C 1.46500 * 119.99779 * 179.97438 * 16 14 11 19 19 C 1.50694 * 109.46954 * 89.99836 * 18 16 14 20 20 H 1.08003 * 120.00102 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99994 * 179.97438 * 19 18 16 22 22 N 1.31509 * 120.00205 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00154 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46987 * 90.00313 * 23 21 19 25 25 H 1.48498 * 109.47209 * 210.00317 * 23 21 19 26 26 H 1.48500 * 109.47126 * 330.00657 * 23 21 19 27 27 S 1.70928 * 124.70526 * 270.24761 * 3 2 1 28 28 H 1.08997 * 109.46790 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47172 * 300.00576 * 1 2 3 30 30 H 1.09006 * 109.46780 * 59.99926 * 1 2 3 31 31 H 1.09003 * 109.46851 * 239.99859 * 2 1 3 32 32 H 1.08997 * 109.46666 * 120.00018 * 2 1 3 33 33 H 1.09005 * 109.47444 * 269.97695 * 6 5 4 34 34 H 1.08999 * 109.47618 * 29.98235 * 6 5 4 35 35 H 1.09003 * 109.47063 * 149.98091 * 6 5 4 36 36 H 1.09002 * 109.47153 * 59.99705 * 13 11 10 37 37 H 1.09001 * 109.46832 * 299.99896 * 13 11 10 38 38 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 39 39 H 1.09003 * 109.47373 * 90.00178 * 17 16 14 40 40 H 1.09005 * 109.46584 * 209.99714 * 17 16 14 41 41 H 1.08999 * 109.47384 * 329.99408 * 17 16 14 42 42 H 1.08993 * 109.47001 * 209.99914 * 18 16 14 43 43 H 1.09002 * 109.47216 * 330.00108 * 18 16 14 44 44 H 0.97004 * 120.00789 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2780 2.1154 1.0637 5 6 2.7114 3.3397 0.8987 6 6 3.0367 4.2579 2.0484 7 6 2.8423 3.7100 -0.4113 8 6 3.3027 5.0122 -0.9000 9 8 3.6104 5.8840 -0.1100 10 8 3.3852 5.2440 -2.2262 11 6 3.8498 6.5565 -2.6382 12 1 3.5656 7.2945 -1.8880 13 6 5.3728 6.5363 -2.7825 14 6 3.2246 6.9183 -3.9609 15 8 2.5349 6.1108 -4.5467 16 7 3.4320 8.1392 -4.4927 17 6 4.2646 9.1147 -3.7848 18 6 2.8247 8.4907 -5.7787 19 6 1.4672 9.1011 -5.5431 20 1 1.0943 9.2161 -4.5360 21 6 0.7017 9.5137 -6.6130 22 7 1.1559 9.3741 -7.8392 23 14 -0.9808 10.2710 -6.3208 24 1 -0.8423 11.7421 -6.1717 25 1 -1.8656 9.9717 -7.4752 26 1 -1.5718 9.7015 -5.0833 27 16 2.3511 2.3404 -1.4052 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.1464 4.8226 2.3256 34 1 3.3726 3.6677 2.9010 35 1 3.8263 4.9477 1.7503 36 1 5.6569 5.7982 -3.5326 37 1 5.8249 6.2746 -1.8258 38 1 5.7215 7.5215 -3.0922 39 1 5.3024 9.0023 -4.0986 40 1 3.9215 10.1226 -4.0184 41 1 4.1894 8.9452 -2.7107 42 1 3.4607 9.2083 -6.2968 43 1 2.7186 7.5930 -6.3879 44 1 0.6172 9.6640 -8.5921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051514225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:35 Heat of formation + Delta-G solvation = -99.280446 kcal Electronic energy + Delta-G solvation = -27124.997368 eV Core-core repulsion = 23168.816668 eV Total energy + Delta-G solvation = -3956.180700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -42.06184 -41.15654 -40.37431 -37.73645 -36.73692 -35.32523 -34.92882 -33.15942 -31.94953 -29.93318 -29.48745 -27.68256 -26.56813 -26.08476 -24.83763 -23.22705 -22.93388 -20.85220 -20.48038 -19.40005 -18.75186 -18.44422 -18.03745 -17.52164 -17.27906 -16.97810 -16.48026 -16.32840 -15.80442 -15.68223 -15.09197 -14.84207 -14.82465 -14.52467 -14.31145 -14.14911 -14.00448 -13.71994 -13.61028 -13.54697 -13.34346 -13.08404 -12.99320 -12.84770 -12.65725 -12.61791 -12.54615 -12.47839 -12.24324 -12.14199 -12.01972 -11.75713 -11.73201 -10.90447 -10.73862 -10.66699 -10.66199 -9.91300 -9.54904 -8.25784 -6.40301 -1.07931 0.00697 0.46315 0.98395 1.12481 1.34924 1.37813 1.47790 1.57483 1.67278 2.26494 2.40213 2.81450 3.04256 3.34720 3.47240 3.66972 3.70910 3.79077 3.83612 4.18792 4.24104 4.31493 4.47431 4.48268 4.58022 4.63570 4.66090 4.72294 4.80517 4.84574 4.91751 4.96193 5.01525 5.03352 5.07141 5.18177 5.27180 5.31099 5.48606 5.75506 6.01251 6.34449 6.39916 6.56914 6.68102 7.16933 7.33191 8.81594 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013266 B = 0.002796 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.206626 B =10012.565459 C =11022.969465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.053 4.053 3 C 0.076 3.924 4 N -0.496 5.496 5 C 0.171 3.829 6 C -0.090 4.090 7 C -0.337 4.337 8 C 0.547 3.453 9 O -0.504 6.504 10 O -0.342 6.342 11 C 0.080 3.920 12 H 0.120 0.880 13 C -0.162 4.162 14 C 0.500 3.500 15 O -0.578 6.578 16 N -0.598 5.598 17 C 0.067 3.933 18 C 0.260 3.740 19 C -0.547 4.547 20 H 0.051 0.949 21 C 0.011 3.989 22 N -0.925 5.925 23 Si 0.966 3.034 24 H -0.261 1.261 25 H -0.279 1.279 26 H -0.276 1.276 27 S 0.220 5.780 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.035 0.965 43 H 0.002 0.998 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.852 -15.195 19.148 25.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.094 4.094 3 C -0.197 4.197 4 N -0.211 5.211 5 C 0.029 3.971 6 C -0.149 4.149 7 C -0.459 4.459 8 C 0.392 3.608 9 O -0.394 6.394 10 O -0.258 6.258 11 C 0.022 3.978 12 H 0.137 0.863 13 C -0.219 4.219 14 C 0.287 3.713 15 O -0.458 6.458 16 N -0.330 5.330 17 C -0.074 4.074 18 C 0.139 3.861 19 C -0.586 4.586 20 H 0.069 0.931 21 C -0.189 4.189 22 N -0.565 5.565 23 Si 0.790 3.210 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.201 1.201 27 S 0.480 5.520 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.130 0.870 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.053 0.947 43 H 0.020 0.980 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.398 -15.768 18.185 24.905 hybrid contribution -0.792 1.268 0.210 1.509 sum 5.606 -14.501 18.395 24.085 Atomic orbital electron populations 1.21814 0.92398 1.04262 1.02161 1.20632 0.97384 0.84743 1.06633 1.28376 0.97258 1.02954 0.91104 1.66207 1.17546 1.05558 1.31832 1.21363 0.91779 0.90912 0.93002 1.20742 1.03727 0.96911 0.93506 1.24645 1.23759 0.99478 0.98020 1.19529 0.74196 0.86460 0.80585 1.90792 1.47412 1.45169 1.56071 1.86691 1.78288 1.36015 1.24760 1.22637 0.97486 0.83347 0.94294 0.86251 1.22309 0.89019 1.05975 1.04577 1.20589 0.81207 0.82431 0.87112 1.90666 1.40746 1.50808 1.63554 1.48046 1.49390 1.12681 1.22911 1.22218 0.94969 0.92990 0.97257 1.18856 0.92548 0.94573 0.80087 1.21679 1.03077 1.40782 0.93046 0.93100 1.25816 1.02273 0.96180 0.94601 1.70031 1.39621 1.47894 0.98930 0.85439 0.78730 0.79146 0.77642 1.18615 1.20423 1.20135 1.84468 1.56093 1.01936 1.09473 0.88620 0.92872 0.92755 0.86797 0.86834 0.89152 0.88493 0.88988 0.91410 0.89204 0.86994 0.89573 0.90578 0.89395 0.94711 0.98035 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.90 71.98 0.71 -0.83 16 2 C -0.05 -0.58 6.51 29.85 0.19 -0.39 16 3 C 0.08 1.47 6.63 88.47 0.59 2.05 16 4 N -0.50 -11.29 10.49 -177.56 -1.86 -13.15 16 5 C 0.17 4.22 6.83 42.35 0.29 4.51 16 6 C -0.09 -1.82 9.72 71.23 0.69 -1.12 16 7 C -0.34 -9.43 6.52 24.08 0.16 -9.27 16 8 C 0.55 17.35 7.90 69.98 0.55 17.90 16 9 O -0.50 -15.79 13.59 19.47 0.26 -15.53 16 10 O -0.34 -12.16 9.32 -51.57 -0.48 -12.64 16 11 C 0.08 2.66 2.17 29.85 0.06 2.73 16 12 H 0.12 3.65 6.15 -2.39 -0.01 3.64 16 13 C -0.16 -3.90 9.28 71.98 0.67 -3.23 16 14 C 0.50 21.96 7.10 87.66 0.62 22.59 16 15 O -0.58 -31.65 16.09 15.72 0.25 -31.39 16 16 N -0.60 -25.50 2.86 -851.14 -2.43 -27.93 16 17 C 0.07 1.94 8.92 127.77 1.14 3.08 16 18 C 0.26 13.99 5.16 85.63 0.44 14.43 16 19 C -0.55 -31.74 9.39 25.60 0.24 -31.50 16 20 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 21 C 0.01 0.62 5.46 84.66 0.46 1.08 16 22 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 23 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 24 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 27 S 0.22 5.16 23.04 -56.49 -1.30 3.86 16 28 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.09 2.00 6.06 -2.39 -0.01 1.99 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.11 2.18 5.12 -2.38 -0.01 2.17 16 39 H 0.09 1.92 7.02 -2.39 -0.02 1.90 16 40 H 0.08 2.28 8.07 -2.38 -0.02 2.26 16 41 H 0.09 2.04 6.08 -2.39 -0.01 2.03 16 42 H 0.03 1.85 8.07 -2.39 -0.02 1.83 16 43 H 0.00 0.09 7.42 -2.39 -0.02 0.08 16 44 H 0.27 15.12 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -79.01 384.39 4.60 -74.41 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.02 Total: 8.60 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 6.82 Total: 22.03 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -4.01 Total: -96.50 kcal Atomic # 8 Polarization: -59.60 SS G_CDS: 0.04 Total: -59.56 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 5.16 SS G_CDS: -1.30 Total: 3.86 kcal Total: -79.01 4.60 -74.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051514225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.866 kcal (2) G-P(sol) polarization free energy of solvation -79.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds