Wall clock time and date at job start Sat Apr 11 2020 05:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39758 * 125.83766 * 2 1 4 4 C 1.36108 * 107.82469 * 180.14567 * 3 2 1 5 5 N 1.39476 * 126.21821 * 179.90597 * 4 3 2 6 6 C 1.34774 * 119.99351 * 359.68290 * 5 4 3 7 7 O 1.21290 * 120.00413 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99810 * 179.97438 * 6 5 4 9 9 O 1.42904 * 109.47575 * 180.02562 * 8 6 5 10 10 C 1.35708 * 117.00392 * 180.02562 * 9 8 6 11 11 C 1.38643 * 120.14323 * 0.02562 * 10 9 8 12 12 C 1.38106 * 120.08747 * 180.02562 * 11 10 9 13 13 C 1.38515 * 120.39230 * 359.95487 * 12 11 10 14 14 C 1.37822 * 120.29578 * 0.02562 * 13 12 11 15 15 C 1.39713 * 119.90149 * 0.02562 * 14 13 12 16 16 C 1.43200 * 120.19365 * 179.97438 * 15 14 13 17 17 N 8.44546 * 104.70420 * 359.75044 * 2 1 3 18 18 N 1.35259 * 107.56757 * 359.64207 * 4 3 2 19 19 C 1.46509 * 126.04638 * 180.22766 * 18 4 3 20 20 C 1.50703 * 109.46812 * 89.99982 * 19 18 4 21 21 H 1.07997 * 120.00147 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99582 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99925 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99780 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47329 * 60.00270 * 24 22 20 26 26 H 1.48504 * 109.47222 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47437 * 300.00016 * 24 22 20 28 28 N 1.30846 * 125.83618 * 179.74538 * 2 1 3 29 29 H 1.09004 * 109.46937 * 270.23529 * 1 2 3 30 30 H 1.09000 * 109.47046 * 30.22727 * 1 2 3 31 31 H 1.08996 * 109.47330 * 150.23763 * 1 2 3 32 32 H 1.07998 * 126.08833 * 0.02908 * 3 2 1 33 33 H 0.96995 * 120.00336 * 179.68978 * 5 4 3 34 34 H 1.09004 * 109.46866 * 60.00894 * 8 6 5 35 35 H 1.09004 * 109.47574 * 300.00884 * 8 6 5 36 36 H 1.07993 * 119.95854 * 0.02562 * 11 10 9 37 37 H 1.08005 * 119.80580 * 179.97438 * 12 11 10 38 38 H 1.08001 * 119.85256 * 179.74827 * 13 12 11 39 39 H 1.08009 * 120.04976 * 179.97438 * 14 13 12 40 40 H 1.09000 * 109.47021 * 209.99738 * 19 18 4 41 41 H 1.08995 * 109.46930 * 330.00117 * 19 18 4 42 42 H 0.97008 * 119.99494 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 -0.0033 5 7 4.7513 1.5274 -0.0063 6 6 4.6157 2.8682 -0.0125 7 8 3.5096 3.3660 -0.0150 8 6 5.8384 3.7492 -0.0151 9 8 5.4374 5.1208 -0.0211 10 6 6.4250 6.0516 -0.0247 11 6 7.7539 5.6565 -0.0230 12 6 8.7581 6.6047 -0.0261 13 6 8.4473 7.9545 -0.0319 14 6 7.1316 8.3651 -0.0340 15 6 6.1060 7.4164 -0.0299 16 6 4.7368 7.8359 -0.0316 17 7 3.6507 8.1688 -0.0356 18 7 3.6092 -0.6404 0.0028 19 6 4.7870 -1.5117 0.0067 20 6 5.1909 -1.8040 1.4288 21 1 4.6269 -1.3826 2.2478 22 6 6.2810 -2.6086 1.6843 23 7 6.9686 -3.1205 0.6870 24 14 6.7820 -2.9704 3.4471 25 1 5.6634 -3.6479 4.1505 26 1 7.9766 -3.8526 3.4511 27 1 7.1048 -1.6979 4.1411 28 7 2.2731 -1.0608 0.0047 29 1 -0.3633 0.0042 1.0277 30 1 -0.3633 0.8879 -0.5174 31 1 -0.3634 -0.8921 -0.5101 32 1 1.9902 2.1597 0.0004 33 1 5.6359 1.1293 -0.0040 34 1 6.4344 3.5408 -0.9036 35 1 6.4327 3.5487 0.8764 36 1 8.0043 4.6060 -0.0192 37 1 9.7918 6.2919 -0.0243 38 1 9.2395 8.6886 -0.0301 39 1 6.8938 9.4186 -0.0381 40 1 4.5498 -2.4456 -0.5030 41 1 5.6083 -1.0146 -0.5094 42 1 7.7358 -3.6863 0.8668 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068218337.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:50 Heat of formation + Delta-G solvation = 67.483262 kcal Electronic energy + Delta-G solvation = -27678.637938 eV Core-core repulsion = 23626.537455 eV Total energy + Delta-G solvation = -4052.100483 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13405 -40.67415 -39.26636 -37.78085 -36.47622 -34.86911 -33.84394 -32.15693 -31.91548 -30.89852 -29.63960 -28.95612 -27.55825 -26.08912 -24.32284 -23.25440 -22.78670 -21.52903 -19.91723 -19.85135 -19.22879 -18.08188 -17.24431 -16.89295 -16.75962 -16.39796 -16.17607 -15.45622 -15.06964 -15.03078 -14.76242 -14.51234 -14.24946 -14.07750 -13.74152 -13.39558 -13.18483 -12.91140 -12.86232 -12.80891 -12.63401 -12.54944 -12.10625 -12.03802 -11.83046 -11.64050 -11.58601 -11.56948 -11.15371 -10.93018 -10.50958 -10.39798 -10.02091 -9.89075 -9.59322 -9.49770 -8.78150 -8.74646 -7.99370 -7.53120 -6.39801 -4.48712 0.39138 0.87347 2.03191 2.07748 2.58478 2.70752 2.95680 3.09578 3.13040 3.18440 3.23375 3.51534 3.53382 3.65030 3.71678 4.18011 4.22864 4.37578 4.49770 4.57679 4.68107 4.74665 4.83660 4.93498 4.97579 5.29217 5.31139 5.57830 5.66165 5.75094 5.93614 6.02116 6.06651 6.10060 6.13496 6.20199 6.33303 6.58384 6.73913 6.76965 6.97920 7.39796 7.41203 7.49008 7.54615 7.72733 7.80308 8.13718 8.54747 8.63905 9.19241 10.67175 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009806 B = 0.002936 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.719990 B = 9533.770534 C =11842.275169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.052 3.948 3 C -0.293 4.293 4 C 0.301 3.699 5 N -0.634 5.634 6 C 0.519 3.481 7 O -0.488 6.488 8 C 0.045 3.955 9 O -0.282 6.282 10 C 0.179 3.821 11 C -0.212 4.212 12 C -0.047 4.047 13 C -0.160 4.160 14 C -0.033 4.033 15 C -0.058 4.058 16 C 0.258 3.742 17 N -0.410 5.410 18 N -0.343 5.343 19 C 0.256 3.744 20 C -0.543 4.543 21 H 0.065 0.935 22 C 0.068 3.932 23 N -0.890 5.890 24 Si 0.907 3.093 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.274 1.274 28 N -0.282 5.282 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.161 0.839 33 H 0.418 0.582 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.353 18.689 -2.927 20.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.113 4.113 3 C -0.325 4.325 4 C 0.079 3.921 5 N -0.283 5.283 6 C 0.303 3.697 7 O -0.360 6.360 8 C -0.034 4.034 9 O -0.192 6.192 10 C 0.129 3.871 11 C -0.230 4.230 12 C -0.066 4.066 13 C -0.178 4.178 14 C -0.053 4.053 15 C -0.063 4.063 16 C -0.058 4.058 17 N -0.086 5.086 18 N -0.128 5.128 19 C 0.139 3.861 20 C -0.581 4.581 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.527 5.527 24 Si 0.733 3.267 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.200 1.200 28 N -0.108 5.108 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.179 0.821 33 H 0.255 0.745 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.160 0.840 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.001 18.134 -2.988 19.047 hybrid contribution 1.711 -0.127 0.991 1.982 sum 6.713 18.007 -1.997 19.321 Atomic orbital electron populations 1.20032 0.87487 1.02409 1.02241 1.22039 0.96587 0.90949 1.01715 1.21299 0.89089 1.00559 1.21508 1.17801 0.87620 0.83341 1.03385 1.42444 1.08678 1.04904 1.72282 1.19777 0.90573 0.81565 0.77742 1.90726 1.26162 1.73393 1.45684 1.22487 0.95876 0.79882 1.05153 1.86146 1.31638 1.14162 1.87297 1.18983 0.87549 0.87642 0.92905 1.21304 0.90956 1.01581 1.09181 1.21228 0.99493 0.92586 0.93280 1.21026 0.96008 0.96250 1.04526 1.21053 0.91261 0.98758 0.94225 1.15298 0.86542 0.90184 1.14234 1.25291 0.92457 0.93993 0.94047 1.81234 1.10856 1.07829 1.08650 1.49376 1.06622 1.02019 1.54828 1.19633 0.77753 0.89810 0.98921 1.21311 1.13343 1.32137 0.91315 0.91722 1.24932 0.95674 0.94791 0.98222 1.69908 1.19107 1.32497 1.31216 0.86406 0.78141 0.78527 0.83596 1.19832 1.20865 1.19974 1.77375 0.86049 1.21713 1.25616 0.91243 0.91087 0.91477 0.82133 0.74522 0.87731 0.87588 0.84013 0.84696 0.84684 0.84230 0.92466 0.93797 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.44 36.01 0.38 -0.57 16 2 C 0.05 1.05 7.21 -82.44 -0.59 0.45 16 3 C -0.29 -6.01 9.58 -39.78 -0.38 -6.39 16 4 C 0.30 6.17 7.66 -153.16 -1.17 5.00 16 5 N -0.63 -10.26 5.42 -11.46 -0.06 -10.33 16 6 C 0.52 7.77 7.87 -10.99 -0.09 7.68 16 7 O -0.49 -9.23 13.63 -14.36 -0.20 -9.43 16 8 C 0.04 0.44 5.22 36.01 0.19 0.63 16 9 O -0.28 -3.42 9.10 -38.74 -0.35 -3.77 16 10 C 0.18 1.69 6.69 -38.71 -0.26 1.43 16 11 C -0.21 -1.37 9.03 -39.48 -0.36 -1.73 16 12 C -0.05 -0.23 10.03 -39.53 -0.40 -0.63 16 13 C -0.16 -0.74 10.02 -39.63 -0.40 -1.14 16 14 C -0.03 -0.20 9.75 -39.18 -0.38 -0.58 16 15 C -0.06 -0.55 5.75 -106.70 -0.61 -1.16 16 16 C 0.26 3.26 14.87 -22.47 -0.33 2.92 16 17 N -0.41 -6.28 18.54 41.84 0.78 -5.50 16 18 N -0.34 -7.84 3.60 -61.57 -0.22 -8.06 16 19 C 0.26 6.18 6.01 -5.19 -0.03 6.15 16 20 C -0.54 -14.11 9.39 -34.44 -0.32 -14.43 16 21 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 22 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -23.50 13.29 55.43 0.74 -22.77 16 24 Si 0.91 20.03 29.54 -169.99 -5.02 15.01 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 28 N -0.28 -6.50 12.56 33.65 0.42 -6.08 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.16 3.28 5.83 -52.49 -0.31 2.97 16 33 H 0.42 5.85 7.96 -40.82 -0.33 5.52 16 34 H 0.10 0.68 7.66 -51.93 -0.40 0.28 16 35 H 0.11 0.76 7.67 -51.93 -0.40 0.36 16 36 H 0.14 0.64 6.30 -52.49 -0.33 0.31 16 37 H 0.14 0.34 8.06 -52.48 -0.42 -0.08 16 38 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 39 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 40 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 41 H 0.04 1.00 7.50 -51.93 -0.39 0.61 16 42 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -34.84 377.76 -7.74 -42.58 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -4.65 Total: 3.39 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -4.86 Total: -0.73 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 1.65 Total: -52.74 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.55 Total: -13.20 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.84 -7.74 -42.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068218337.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.058 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds