Wall clock time and date at job start Sat Apr 11 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 O 1.42899 * 109.47153 * 179.97438 * 8 6 5 10 10 C 1.35901 * 117.00179 * 179.97438 * 9 8 6 11 11 C 1.38870 * 119.98175 * 359.73663 * 10 9 8 12 12 C 1.38240 * 120.25079 * 179.71919 * 11 10 9 13 13 C 1.37996 * 120.21539 * 0.54986 * 12 11 10 14 14 C 1.39625 * 119.95562 * 359.72671 * 13 12 11 15 15 C 1.43194 * 120.12348 * 179.97438 * 14 13 12 16 16 N 9.50061 * 118.73015 * 179.71743 * 5 1 2 17 17 C 1.38439 * 119.98657 * 180.02562 * 10 9 8 18 18 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 19 19 C 1.46491 * 126.04623 * 179.87688 * 18 4 3 20 20 C 1.50702 * 109.46957 * 269.71277 * 19 18 4 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48501 * 109.47188 * 90.00793 * 24 22 20 26 26 H 1.48501 * 109.47085 * 210.00372 * 24 22 20 27 27 H 1.48498 * 109.47634 * 330.00608 * 24 22 20 28 28 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 30 30 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 31 31 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 32 32 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 33 33 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 34 34 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 35 35 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 36 36 H 1.08004 * 119.86805 * 359.97438 * 11 10 9 37 37 H 1.08007 * 119.89347 * 180.27404 * 12 11 10 38 38 H 1.07995 * 120.02212 * 179.74434 * 13 12 11 39 39 H 1.08003 * 120.10198 * 359.97438 * 17 10 9 40 40 H 1.09004 * 109.47166 * 149.71543 * 19 18 4 41 41 H 1.08994 * 109.47507 * 29.71250 * 19 18 4 42 42 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 8 5.4372 5.1209 0.0292 10 6 6.4262 6.0530 0.0374 11 6 7.7562 5.6535 0.0482 12 6 8.7667 6.5969 0.0507 13 6 8.4605 7.9425 0.0540 14 6 7.1263 8.3539 0.0489 15 6 6.8045 9.7493 0.0528 16 7 6.5491 10.8563 0.0556 17 6 6.1073 7.4001 0.0410 18 7 3.6093 -0.6405 0.0013 19 6 4.7870 -1.5116 0.0026 20 6 5.1921 -1.8109 -1.4178 21 1 4.6288 -1.3935 -2.2393 22 6 6.2856 -2.6124 -1.6685 23 7 6.9718 -3.1203 -0.6681 24 14 6.7923 -2.9770 -3.4290 25 1 7.7551 -1.9451 -3.8909 26 1 7.4328 -4.3153 -3.4927 27 1 5.5920 -2.9606 -4.3032 28 7 2.2731 -1.0608 0.0005 29 1 -0.3634 0.0003 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8901 -0.5136 32 1 1.9901 2.1596 -0.0009 33 1 5.6359 1.1294 0.0155 34 1 6.4297 3.5415 0.9182 35 1 6.4372 3.5481 -0.8617 36 1 8.0019 4.6018 0.0505 37 1 9.7991 6.2798 0.0547 38 1 9.2524 8.6768 0.0601 39 1 5.0733 7.7120 0.0369 40 1 4.5494 -2.4431 0.5166 41 1 5.6079 -1.0120 0.5169 42 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068218731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:54 Heat of formation + Delta-G solvation = 66.905902 kcal Electronic energy + Delta-G solvation = -27305.464499 eV Core-core repulsion = 23253.338979 eV Total energy + Delta-G solvation = -4052.125519 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.10617 -40.62692 -39.30351 -38.04166 -36.53242 -34.87748 -33.85314 -32.16510 -31.89630 -31.04442 -29.59938 -28.95107 -27.55562 -26.10137 -24.44257 -23.08549 -22.90300 -21.75577 -20.01543 -19.60963 -19.47071 -17.44408 -17.14192 -16.86421 -16.70778 -16.62260 -16.36472 -15.90306 -15.04870 -15.01249 -14.59765 -14.42037 -14.34161 -14.09307 -13.94559 -13.71258 -13.31504 -12.98802 -12.85395 -12.83420 -12.71736 -12.56437 -12.26668 -12.11043 -11.84342 -11.64853 -11.54267 -11.48838 -11.14848 -10.95469 -10.51624 -10.40651 -10.02903 -9.87973 -9.60362 -9.51705 -8.79379 -8.76290 -8.00605 -7.54542 -6.40681 -4.49355 0.26622 0.88696 1.99763 2.06663 2.32259 2.52303 2.95063 3.08786 3.09823 3.18658 3.24663 3.41509 3.49937 3.51435 3.74969 4.17246 4.19887 4.38951 4.49582 4.59418 4.64284 4.70187 4.82782 4.92731 4.97558 5.29790 5.36753 5.56568 5.64594 5.79838 5.83696 5.99117 6.01375 6.07769 6.09963 6.18036 6.31894 6.57116 6.74703 6.83902 6.96875 7.06747 7.38952 7.47763 7.53714 7.71849 7.79122 8.12554 8.53919 8.63080 9.18598 10.66331 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010540 B = 0.002523 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.001596 B =11097.177366 C =13238.541384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.051 3.949 3 C -0.292 4.292 4 C 0.300 3.700 5 N -0.635 5.635 6 C 0.521 3.479 7 O -0.490 6.490 8 C 0.046 3.954 9 O -0.284 6.284 10 C 0.134 3.866 11 C -0.181 4.181 12 C -0.077 4.077 13 C -0.109 4.109 14 C 0.010 3.990 15 C 0.257 3.743 16 N -0.412 5.412 17 C -0.101 4.101 18 N -0.343 5.343 19 C 0.256 3.744 20 C -0.541 4.541 21 H 0.065 0.935 22 C 0.067 3.933 23 N -0.890 5.890 24 Si 0.906 3.094 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.271 1.271 28 N -0.282 5.282 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.162 0.838 33 H 0.418 0.582 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.144 0.856 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.461 16.076 2.952 16.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.113 4.113 3 C -0.324 4.324 4 C 0.078 3.922 5 N -0.284 5.284 6 C 0.305 3.695 7 O -0.362 6.362 8 C -0.033 4.033 9 O -0.196 6.196 10 C 0.088 3.912 11 C -0.200 4.200 12 C -0.095 4.095 13 C -0.130 4.130 14 C 0.006 3.994 15 C -0.059 4.059 16 N -0.087 5.087 17 C -0.122 4.122 18 N -0.128 5.128 19 C 0.138 3.862 20 C -0.579 4.579 21 H 0.083 0.917 22 C -0.137 4.137 23 N -0.527 5.527 24 Si 0.733 3.267 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.196 1.196 28 N -0.108 5.108 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.179 0.821 33 H 0.255 0.745 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.162 0.838 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.402 16.742 3.007 17.346 hybrid contribution 1.400 -0.390 -0.961 1.742 sum 4.802 16.352 2.046 17.165 Atomic orbital electron populations 1.20029 0.87498 1.02528 1.02112 1.22043 0.96581 0.90969 1.01744 1.21292 0.89048 1.00537 1.21556 1.17817 0.87650 0.83343 1.03384 1.42465 1.08669 1.04967 1.72252 1.19797 0.90595 0.81518 0.77595 1.90705 1.26196 1.73430 1.45867 1.22421 0.95716 0.80277 1.04882 1.86160 1.31334 1.13769 1.88298 1.18732 0.87195 0.88913 0.96364 1.21615 0.91732 1.01490 1.05179 1.20909 0.99667 0.91806 0.97132 1.21099 0.94310 0.96675 1.00931 1.15617 0.93813 0.84504 1.05434 1.25572 0.93785 0.92585 0.93915 1.81279 1.07227 1.11853 1.08348 1.20347 1.00059 0.89118 1.02664 1.49372 1.06613 1.02036 1.54793 1.19639 0.77763 0.89815 0.98970 1.21339 1.13104 1.32177 0.91319 0.91665 1.24939 0.95723 0.94836 0.98196 1.69915 1.19033 1.32703 1.31055 0.86353 0.78838 0.77910 0.83619 1.20313 1.20766 1.19602 1.77383 0.86059 1.21740 1.25591 0.91309 0.91070 0.91451 0.82089 0.74531 0.88021 0.87881 0.84259 0.84342 0.84755 0.83818 0.92467 0.93795 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.00 0.38 -0.53 16 2 C 0.05 1.00 7.21 -82.44 -0.59 0.41 16 3 C -0.29 -5.75 9.58 -39.78 -0.38 -6.13 16 4 C 0.30 5.95 7.66 -153.16 -1.17 4.78 16 5 N -0.63 -9.80 5.41 -11.46 -0.06 -9.86 16 6 C 0.52 7.25 7.87 -10.98 -0.09 7.17 16 7 O -0.49 -8.57 13.63 -14.36 -0.20 -8.76 16 8 C 0.05 0.41 5.22 36.01 0.19 0.60 16 9 O -0.28 -3.02 9.67 -39.34 -0.38 -3.40 16 10 C 0.13 1.12 6.68 -39.27 -0.26 0.86 16 11 C -0.18 -1.11 9.03 -39.35 -0.36 -1.47 16 12 C -0.08 -0.38 10.02 -39.67 -0.40 -0.78 16 13 C -0.11 -0.61 9.75 -39.15 -0.38 -0.99 16 14 C 0.01 0.07 5.73 -106.96 -0.61 -0.54 16 15 C 0.26 2.35 15.33 -22.47 -0.34 2.00 16 16 N -0.41 -4.74 18.54 41.84 0.78 -3.96 16 17 C -0.10 -0.82 9.69 -39.01 -0.38 -1.19 16 18 N -0.34 -7.65 3.60 -61.58 -0.22 -7.87 16 19 C 0.26 6.06 6.01 -5.20 -0.03 6.02 16 20 C -0.54 -13.86 9.39 -34.44 -0.32 -14.18 16 21 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 22 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -23.27 13.29 55.43 0.74 -22.53 16 24 Si 0.91 19.83 29.54 -169.99 -5.02 14.81 16 25 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 28 N -0.28 -6.35 12.56 33.65 0.42 -5.93 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.16 3.10 5.83 -52.49 -0.31 2.79 16 33 H 0.42 5.61 7.96 -40.82 -0.32 5.28 16 34 H 0.10 0.61 7.64 -51.93 -0.40 0.21 16 35 H 0.10 0.67 7.67 -51.93 -0.40 0.28 16 36 H 0.14 0.59 6.28 -52.48 -0.33 0.26 16 37 H 0.14 0.37 8.06 -52.48 -0.42 -0.06 16 38 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 40 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.04 0.98 7.49 -51.93 -0.39 0.60 16 42 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 378.36 15.07 5.70 5.70 Total: -1.00 -33.03 378.36 -7.75 -40.78 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -4.65 Total: 3.41 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -4.86 Total: -2.38 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 1.65 Total: -50.16 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.58 Total: -12.17 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.03 -7.75 -40.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068218731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.688 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds