Wall clock time and date at job start Sat Apr 11 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 O 1.42899 * 109.47153 * 179.97438 * 8 6 5 10 10 C 1.35901 * 117.00179 * 179.97438 * 9 8 6 11 11 C 1.38870 * 119.98175 * 359.73663 * 10 9 8 12 12 C 1.38240 * 120.25079 * 179.71919 * 11 10 9 13 13 C 1.37996 * 120.21539 * 0.54986 * 12 11 10 14 14 C 1.39625 * 119.95562 * 359.72671 * 13 12 11 15 15 C 1.43194 * 120.12348 * 179.97438 * 14 13 12 16 16 N 9.50061 * 118.73015 * 179.71743 * 5 1 2 17 17 C 1.38439 * 119.98657 * 180.02562 * 10 9 8 18 18 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 19 19 C 1.46491 * 126.04623 * 179.87688 * 18 4 3 20 20 C 1.50702 * 109.46957 * 269.71277 * 19 18 4 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48501 * 109.47188 * 90.00793 * 24 22 20 26 26 H 1.48501 * 109.47085 * 210.00372 * 24 22 20 27 27 H 1.48498 * 109.47634 * 330.00608 * 24 22 20 28 28 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 30 30 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 31 31 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 32 32 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 33 33 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 34 34 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 35 35 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 36 36 H 1.08004 * 119.86805 * 359.97438 * 11 10 9 37 37 H 1.08007 * 119.89347 * 180.27404 * 12 11 10 38 38 H 1.07995 * 120.02212 * 179.74434 * 13 12 11 39 39 H 1.08003 * 120.10198 * 359.97438 * 17 10 9 40 40 H 1.09004 * 109.47166 * 149.71543 * 19 18 4 41 41 H 1.08994 * 109.47507 * 29.71250 * 19 18 4 42 42 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 8 5.4372 5.1209 0.0292 10 6 6.4262 6.0530 0.0374 11 6 7.7562 5.6535 0.0482 12 6 8.7667 6.5969 0.0507 13 6 8.4605 7.9425 0.0540 14 6 7.1263 8.3539 0.0489 15 6 6.8045 9.7493 0.0528 16 7 6.5491 10.8563 0.0556 17 6 6.1073 7.4001 0.0410 18 7 3.6093 -0.6405 0.0013 19 6 4.7870 -1.5116 0.0026 20 6 5.1921 -1.8109 -1.4178 21 1 4.6288 -1.3935 -2.2393 22 6 6.2856 -2.6124 -1.6685 23 7 6.9718 -3.1203 -0.6681 24 14 6.7923 -2.9770 -3.4290 25 1 7.7551 -1.9451 -3.8909 26 1 7.4328 -4.3153 -3.4927 27 1 5.5920 -2.9606 -4.3032 28 7 2.2731 -1.0608 0.0005 29 1 -0.3634 0.0003 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8901 -0.5136 32 1 1.9901 2.1596 -0.0009 33 1 5.6359 1.1294 0.0155 34 1 6.4297 3.5415 0.9182 35 1 6.4372 3.5481 -0.8617 36 1 8.0019 4.6018 0.0505 37 1 9.7991 6.2798 0.0547 38 1 9.2524 8.6768 0.0601 39 1 5.0733 7.7120 0.0369 40 1 4.5494 -2.4431 0.5166 41 1 5.6079 -1.0120 0.5169 42 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068218731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:52 Heat of formation + Delta-G solvation = 47.716372 kcal Electronic energy + Delta-G solvation = -27306.296619 eV Core-core repulsion = 23253.338979 eV Total energy + Delta-G solvation = -4052.957640 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -42.45689 -41.41772 -40.39556 -38.78611 -37.25784 -36.28810 -35.59437 -33.83289 -32.42326 -31.75294 -30.84361 -30.26658 -28.67966 -27.79087 -25.10712 -24.70660 -23.54167 -22.94407 -21.33297 -20.85171 -20.29950 -18.87524 -18.53141 -18.09754 -17.52907 -17.38406 -17.17795 -16.81394 -16.55056 -16.28665 -15.91656 -15.43888 -15.35867 -14.96528 -14.91923 -14.56581 -14.42448 -14.33940 -14.03993 -14.00838 -13.63119 -13.60043 -13.36839 -13.31738 -13.11517 -12.89337 -12.71265 -12.66914 -12.28718 -12.08976 -12.07294 -11.93965 -11.68392 -11.44890 -10.93210 -10.72836 -10.02273 -9.63203 -9.30339 -9.08012 -8.34033 -6.50918 -0.26789 0.40117 0.75433 1.03111 1.37958 1.41958 1.50449 1.54141 1.59523 1.89918 1.93773 2.03497 2.34390 2.49671 2.86738 2.91770 2.96779 3.32228 3.80527 3.83883 4.00930 4.10569 4.11812 4.18040 4.23120 4.33547 4.51935 4.62695 4.72329 4.84331 4.87656 4.88417 4.90131 4.96527 5.17519 5.21614 5.24425 5.33671 5.39499 5.53835 5.59524 5.79630 5.95395 6.12778 6.21031 6.33647 6.37865 6.59562 6.90832 7.03027 7.21136 8.72206 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010540 B = 0.002523 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.001596 B =11097.177366 C =13238.541384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.057 3.943 3 C -0.308 4.308 4 C 0.302 3.698 5 N -0.631 5.631 6 C 0.520 3.480 7 O -0.529 6.529 8 C 0.053 3.947 9 O -0.313 6.313 10 C 0.115 3.885 11 C -0.172 4.172 12 C -0.071 4.071 13 C -0.098 4.098 14 C -0.002 4.002 15 C 0.280 3.720 16 N -0.461 5.461 17 C -0.113 4.113 18 N -0.364 5.364 19 C 0.271 3.729 20 C -0.554 4.554 21 H 0.046 0.954 22 C 0.030 3.970 23 N -0.912 5.912 24 Si 0.966 3.034 25 H -0.259 1.259 26 H -0.278 1.278 27 H -0.282 1.282 28 N -0.330 5.330 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.166 0.834 33 H 0.427 0.573 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.164 0.836 37 H 0.171 0.829 38 H 0.156 0.844 39 H 0.133 0.867 40 H 0.026 0.974 41 H 0.055 0.945 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.725 16.500 2.429 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 C -0.340 4.340 4 C 0.079 3.921 5 N -0.281 5.281 6 C 0.307 3.693 7 O -0.403 6.403 8 C -0.025 4.025 9 O -0.227 6.227 10 C 0.070 3.930 11 C -0.191 4.191 12 C -0.089 4.089 13 C -0.119 4.119 14 C -0.006 4.006 15 C -0.035 4.035 16 N -0.137 5.137 17 C -0.134 4.134 18 N -0.150 5.150 19 C 0.152 3.848 20 C -0.593 4.593 21 H 0.065 0.935 22 C -0.172 4.172 23 N -0.550 5.550 24 Si 0.790 3.210 25 H -0.183 1.183 26 H -0.203 1.203 27 H -0.208 1.208 28 N -0.155 5.155 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.183 0.817 33 H 0.266 0.734 34 H 0.157 0.843 35 H 0.152 0.848 36 H 0.182 0.818 37 H 0.189 0.811 38 H 0.173 0.827 39 H 0.151 0.849 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.696 17.190 2.494 18.280 hybrid contribution 0.680 -0.483 -0.760 1.129 sum 6.376 16.707 1.734 17.966 Atomic orbital electron populations 1.20221 0.84106 1.03829 1.03846 1.22861 0.98698 0.90121 0.99091 1.21479 0.89301 1.00730 1.22495 1.18190 0.89340 0.82820 1.01736 1.42636 1.07902 1.05322 1.72233 1.20820 0.91887 0.81013 0.75585 1.90678 1.28343 1.73854 1.47423 1.22533 0.92924 0.78918 1.08091 1.86097 1.32972 1.14495 1.89087 1.18825 0.87825 0.88305 0.98053 1.21942 0.90673 1.03110 1.03407 1.21295 1.00975 0.91047 0.95580 1.21422 0.93733 0.97779 0.98948 1.15645 0.94678 0.83176 1.07070 1.25850 0.92433 0.92741 0.92444 1.81292 1.08721 1.13328 1.10373 1.20342 0.99949 0.89693 1.03455 1.49187 1.06312 1.02795 1.56670 1.19279 0.78615 0.89087 0.97826 1.21384 1.13390 1.32864 0.91620 0.93533 1.25625 0.95472 0.94305 1.01776 1.69982 1.19359 1.32911 1.32726 0.85436 0.78256 0.78305 0.78977 1.18323 1.20266 1.20766 1.77327 0.86528 1.23511 1.28163 0.89240 0.88960 0.90900 0.81710 0.73390 0.84299 0.84753 0.81829 0.81110 0.82678 0.84865 0.95582 0.92690 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.70 10.44 71.23 0.74 -0.96 16 2 C 0.06 2.24 7.21 43.07 0.31 2.55 16 3 C -0.31 -12.21 9.58 22.14 0.21 -12.00 16 4 C 0.30 12.06 7.66 131.32 1.01 13.07 16 5 N -0.63 -19.02 5.41 -308.55 -1.67 -20.69 16 6 C 0.52 13.92 7.87 87.66 0.69 14.60 16 7 O -0.53 -18.47 13.63 15.97 0.22 -18.26 16 8 C 0.05 0.80 5.22 71.24 0.37 1.18 16 9 O -0.31 -6.21 9.67 -73.41 -0.71 -6.92 16 10 C 0.11 1.71 6.68 22.47 0.15 1.86 16 11 C -0.17 -1.45 9.03 22.42 0.20 -1.25 16 12 C -0.07 -0.40 10.02 22.21 0.22 -0.18 16 13 C -0.10 -0.79 9.75 22.55 0.22 -0.57 16 14 C 0.00 -0.03 5.73 -21.38 -0.12 -0.15 16 15 C 0.28 5.05 15.33 88.33 1.35 6.40 16 16 N -0.46 -10.79 18.54 19.00 0.35 -10.44 16 17 C -0.11 -1.77 9.69 22.64 0.22 -1.55 16 18 N -0.36 -16.64 3.60 -348.73 -1.26 -17.90 16 19 C 0.27 13.13 6.01 85.64 0.51 13.64 16 20 C -0.55 -28.75 9.39 25.60 0.24 -28.51 16 21 H 0.05 2.55 7.81 -2.91 -0.02 2.52 16 22 C 0.03 1.52 5.46 84.66 0.46 1.98 16 23 N -0.91 -47.33 13.29 21.45 0.28 -47.05 16 24 Si 0.97 39.98 29.54 68.60 2.03 42.01 16 25 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 26 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 27 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 28 N -0.33 -15.23 12.56 -47.45 -0.60 -15.83 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.17 6.39 5.83 -2.91 -0.02 6.38 16 33 H 0.43 10.94 7.96 -92.70 -0.74 10.20 16 34 H 0.14 1.09 7.64 -2.39 -0.02 1.07 16 35 H 0.13 1.22 7.67 -2.39 -0.02 1.21 16 36 H 0.16 0.53 6.28 -2.91 -0.02 0.51 16 37 H 0.17 -0.07 8.06 -2.91 -0.02 -0.10 16 38 H 0.16 0.60 8.06 -2.91 -0.02 0.57 16 39 H 0.13 2.23 8.06 -2.91 -0.02 2.20 16 40 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.06 2.49 7.49 -2.39 -0.02 2.47 16 42 H 0.27 13.33 8.31 -92.70 -0.77 12.56 16 Total: -1.00 -74.72 378.36 5.80 -68.92 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.35 Total: 16.02 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 6.80 Total: 10.14 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -2.89 Total: -111.90 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.49 Total: -25.18 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -74.72 5.80 -68.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068218731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.640 kcal (2) G-P(sol) polarization free energy of solvation -74.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds