Wall clock time and date at job start Sat Apr 11 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38134 * 120.03682 * 2 1 4 4 C 1.38262 * 120.07125 * 180.25668 * 3 2 1 5 5 C 1.38299 * 120.13706 * 359.75506 * 4 3 2 6 6 S 1.76202 * 119.96357 * 179.97438 * 5 4 3 7 7 C 1.81402 * 104.44940 * 269.98289 * 6 5 4 8 8 O 1.42095 * 104.27777 * 26.05275 * 6 5 4 9 9 O 1.42097 * 104.27795 * 153.91028 * 6 5 4 10 10 C 1.38090 * 120.07200 * 359.96584 * 5 4 3 11 11 C 1.38847 * 120.03353 * 179.71591 * 2 1 3 12 12 N 1.39941 * 120.07157 * 0.02562 * 11 2 1 13 13 C 1.34778 * 120.00399 * 154.91201 * 12 11 2 14 14 O 1.21586 * 119.99665 * 354.39342 * 13 12 11 15 15 N 1.34771 * 119.99996 * 174.38757 * 13 12 11 16 16 C 1.46498 * 120.00563 * 0.02562 * 15 13 12 17 17 C 1.46505 * 119.99929 * 180.02562 * 15 13 12 18 18 H 1.09005 * 109.46576 * 0.02562 * 17 15 13 19 19 C 1.52991 * 109.47387 * 119.99872 * 17 15 13 20 20 C 1.50699 * 109.47035 * 240.00318 * 17 15 13 21 21 H 1.07991 * 120.00133 * 359.97438 * 20 17 15 22 22 C 1.37882 * 119.99732 * 179.97438 * 20 17 15 23 23 N 1.31507 * 120.00144 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99701 * 179.97438 * 22 20 17 25 25 H 1.48500 * 109.47147 * 60.00208 * 24 22 20 26 26 H 1.48498 * 109.46985 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47320 * 300.00145 * 24 22 20 28 28 H 1.09004 * 109.47422 * 270.28679 * 1 2 3 29 29 H 1.09004 * 109.47024 * 30.27630 * 1 2 3 30 30 H 1.08997 * 109.47281 * 150.28058 * 1 2 3 31 31 H 1.07999 * 119.96749 * 359.96904 * 3 2 1 32 32 H 1.07996 * 119.92863 * 179.74217 * 4 3 2 33 33 H 1.08996 * 109.47239 * 59.99890 * 7 6 5 34 34 H 1.09007 * 109.46784 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.47084 * 299.99559 * 7 6 5 36 36 H 1.08003 * 120.03589 * 180.02562 * 10 5 4 37 37 H 0.97010 * 119.99801 * 334.90890 * 12 11 2 38 38 H 1.08998 * 109.47094 * 270.00251 * 16 15 13 39 39 H 1.09001 * 109.46951 * 29.99181 * 16 15 13 40 40 H 1.08996 * 109.47452 * 149.99537 * 16 15 13 41 41 H 1.09002 * 109.47555 * 179.97438 * 19 17 15 42 42 H 1.09006 * 109.47384 * 300.00407 * 19 17 15 43 43 H 1.09002 * 109.47086 * 59.99815 * 19 17 15 44 44 H 0.97002 * 120.00319 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1967 -0.0054 5 6 4.2761 0.0010 -0.0056 6 16 6.0381 0.0074 -0.0131 7 6 6.4833 0.0046 -1.7717 8 8 6.3866 1.2472 0.5874 9 8 6.3956 -1.2267 0.5937 10 6 3.5908 -1.1978 0.0002 11 6 2.2019 -1.2020 0.0060 12 7 1.5044 -2.4152 0.0114 13 6 2.0851 -3.5287 -0.4780 14 8 3.1731 -3.4604 -1.0164 15 7 1.4599 -4.7177 -0.3703 16 6 0.1488 -4.8000 0.2781 17 6 2.0913 -5.9281 -0.9018 18 1 3.0544 -5.6716 -1.3432 19 6 2.3022 -6.9333 0.2321 20 6 1.2020 -6.5377 -1.9547 21 1 0.2605 -6.0706 -2.2028 22 6 1.5905 -7.6920 -2.6012 23 7 2.7368 -8.2611 -2.2987 24 14 0.4879 -8.4480 -3.9059 25 1 0.2822 -7.4722 -5.0063 26 1 1.1280 -9.6748 -4.4446 27 1 -0.8235 -8.7982 -3.3034 28 1 -0.3634 0.0051 1.0277 29 1 -0.3633 0.8875 -0.5181 30 1 -0.3634 -0.8925 -0.5094 31 1 1.6585 2.1312 -0.0005 32 1 4.1193 2.1329 -0.0096 33 1 6.0711 0.8918 -2.2523 34 1 7.5687 0.0078 -1.8717 35 1 6.0776 -0.8881 -2.2477 36 1 4.1342 -2.1311 0.0004 37 1 0.6029 -2.4548 0.3675 38 1 0.2817 -4.9792 1.3450 39 1 -0.3885 -3.8630 0.1314 40 1 -0.4223 -5.6187 -0.1596 41 1 2.7716 -7.8341 -0.1634 42 1 2.9454 -6.4924 0.9937 43 1 1.3393 -7.1899 0.6739 44 1 3.0103 -9.0729 -2.7538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086281381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:19 Heat of formation + Delta-G solvation = -56.055923 kcal Electronic energy + Delta-G solvation = -28017.150366 eV Core-core repulsion = 24062.844022 eV Total energy + Delta-G solvation = -3954.306344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.62886 -38.77782 -37.06460 -35.92253 -35.68036 -34.72256 -32.96851 -32.71709 -30.13256 -29.58745 -28.86809 -27.29043 -26.26781 -25.26382 -23.41025 -22.02197 -21.19009 -19.35289 -19.17676 -18.15265 -17.33755 -16.49336 -16.21486 -16.16881 -15.87127 -15.34159 -15.21818 -15.00167 -14.70518 -14.16584 -13.98614 -13.75308 -13.37818 -13.27753 -13.24240 -12.80181 -12.73788 -12.56111 -12.37446 -12.13943 -12.05216 -11.98413 -11.78814 -11.59725 -11.50236 -11.16757 -11.10206 -10.91342 -10.75408 -10.72777 -10.38585 -10.30906 -10.21356 -9.43216 -9.23585 -9.07410 -8.47757 -8.09715 -7.62775 -6.11917 -4.20524 0.06087 0.81111 1.33885 2.85764 3.00528 3.23882 3.26762 3.29907 3.31975 3.76294 3.96737 4.12986 4.29044 4.42093 4.61532 4.70092 4.72127 4.86445 5.02277 5.19103 5.19605 5.32767 5.36267 5.46823 5.56809 5.59627 5.73263 5.75844 5.87064 6.03014 6.17785 6.20335 6.30065 6.44134 6.64577 6.77560 6.95592 7.03839 7.07942 7.37869 7.61164 7.73592 7.99962 8.14589 8.50031 8.78597 9.04873 9.46022 10.93295 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.003278 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.953683 B = 8539.797042 C = 9636.703519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.078 4.078 3 C -0.119 4.119 4 C -0.055 4.055 5 C -0.643 4.643 6 S 2.502 3.498 7 C -0.649 4.649 8 O -0.945 6.945 9 O -0.932 6.932 10 C -0.034 4.034 11 C 0.165 3.835 12 N -0.690 5.690 13 C 0.695 3.305 14 O -0.576 6.576 15 N -0.599 5.599 16 C 0.083 3.917 17 C 0.271 3.729 18 H 0.067 0.933 19 C -0.147 4.147 20 C -0.530 4.530 21 H 0.058 0.942 22 C 0.066 3.934 23 N -0.885 5.885 24 Si 0.900 3.100 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.277 1.277 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.137 0.863 36 H 0.170 0.830 37 H 0.405 0.595 38 H 0.046 0.954 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.013 0.987 43 H 0.029 0.971 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.233 18.109 4.182 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.075 4.075 5 C -0.731 4.731 6 S 2.682 3.318 7 C -0.799 4.799 8 O -0.943 6.943 9 O -0.929 6.929 10 C -0.055 4.055 11 C 0.067 3.933 12 N -0.339 5.339 13 C 0.397 3.603 14 O -0.454 6.454 15 N -0.333 5.333 16 C -0.061 4.061 17 C 0.172 3.828 18 H 0.085 0.915 19 C -0.206 4.206 20 C -0.569 4.569 21 H 0.077 0.923 22 C -0.136 4.136 23 N -0.523 5.523 24 Si 0.727 3.273 25 H -0.203 1.203 26 H -0.211 1.211 27 H -0.203 1.203 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.149 0.851 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.156 0.844 36 H 0.187 0.813 37 H 0.242 0.758 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.032 0.968 43 H 0.048 0.952 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.828 17.793 4.449 18.359 hybrid contribution -1.934 -0.511 -1.215 2.340 sum -2.761 17.282 3.234 17.797 Atomic orbital electron populations 1.20830 0.90693 1.03519 1.02682 1.19876 0.96267 0.91894 1.00177 1.20849 0.93981 0.96936 1.02112 1.20756 0.94552 0.96355 0.95883 1.30394 1.25604 0.98887 1.18179 1.05050 0.74481 0.74549 0.77754 1.30207 1.12062 1.12412 1.25264 1.93555 1.82429 1.44619 1.73666 1.93618 1.81885 1.44368 1.73057 1.21378 0.93310 0.98413 0.92400 1.17467 0.91363 0.84597 0.99861 1.43046 1.19022 1.06602 1.65205 1.16010 0.84381 0.80374 0.79555 1.90819 1.20860 1.84619 1.49112 1.47660 1.19361 1.07017 1.59283 1.21577 0.85724 1.01747 0.97094 1.18951 0.94945 0.77752 0.91201 0.91535 1.22106 0.98892 1.02514 0.97059 1.21262 1.05580 1.09382 1.20643 0.92339 1.24876 0.95237 0.96629 0.96903 1.69863 1.20552 1.20072 1.41811 0.86544 0.80446 0.78551 0.81739 1.20293 1.21116 1.20257 0.90592 0.90654 0.91295 0.85078 0.84434 0.85195 0.85192 0.84413 0.81257 0.75757 0.93547 0.93713 0.89405 0.88655 0.96808 0.95175 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.45 36.00 0.34 -0.68 16 2 C -0.08 -0.93 5.90 -104.44 -0.62 -1.54 16 3 C -0.12 -1.26 9.70 -39.61 -0.38 -1.64 16 4 C -0.06 -0.63 9.47 -39.55 -0.37 -1.00 16 5 C -0.64 -8.63 5.65 -39.61 -0.22 -8.86 16 6 S 2.50 30.23 5.80 -107.50 -0.62 29.61 16 7 C -0.65 -5.43 10.80 101.05 1.09 -4.34 16 8 O -0.95 -12.84 17.12 -57.54 -0.99 -13.82 16 9 O -0.93 -15.30 17.12 -57.54 -0.99 -16.29 16 10 C -0.03 -0.55 8.14 -39.40 -0.32 -0.87 16 11 C 0.17 2.51 6.41 -83.69 -0.54 1.97 16 12 N -0.69 -10.80 4.85 -14.23 -0.07 -10.86 16 13 C 0.69 14.19 8.09 -86.92 -0.70 13.49 16 14 O -0.58 -13.71 12.83 5.29 0.07 -13.65 16 15 N -0.60 -12.35 2.75 -181.01 -0.50 -12.85 16 16 C 0.08 1.29 9.25 59.85 0.55 1.85 16 17 C 0.27 6.76 2.64 -69.08 -0.18 6.57 16 18 H 0.07 1.92 6.90 -51.93 -0.36 1.57 16 19 C -0.15 -3.46 8.97 37.15 0.33 -3.12 16 20 C -0.53 -13.87 7.99 -34.44 -0.28 -14.15 16 21 H 0.06 1.50 7.33 -52.49 -0.38 1.11 16 22 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 23 N -0.89 -24.52 11.32 55.43 0.63 -23.89 16 24 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.07 0.61 6.99 -51.93 -0.36 0.25 16 31 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 32 H 0.14 1.23 7.56 -52.49 -0.40 0.83 16 33 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.13 0.83 8.14 -51.92 -0.42 0.41 16 35 H 0.14 1.23 8.14 -51.92 -0.42 0.81 16 36 H 0.17 3.25 5.30 -52.48 -0.28 2.97 16 37 H 0.40 4.99 5.11 -40.82 -0.21 4.78 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.54 6.29 -51.93 -0.33 0.21 16 40 H 0.09 1.46 7.02 -51.93 -0.36 1.10 16 41 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 42 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 44 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 369.93 15.07 5.57 5.57 Total: -1.00 -35.62 369.93 -9.21 -44.83 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.91 Total: 6.49 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -1.39 Total: -10.66 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.06 Total: -47.61 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -1.90 Total: -43.75 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 30.23 SS G_CDS: -0.62 Total: 29.61 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.62 -9.21 -44.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086281381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.227 kcal (2) G-P(sol) polarization free energy of solvation -35.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds