Wall clock time and date at job start Sat Apr 11 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38144 * 120.03082 * 2 1 4 4 C 1.38263 * 120.06639 * 179.97438 * 3 2 1 5 5 C 1.38304 * 120.14188 * 359.97438 * 4 3 2 6 6 S 1.76202 * 119.96427 * 180.02562 * 5 4 3 7 7 C 1.81399 * 104.45031 * 89.99918 * 6 5 4 8 8 O 1.42101 * 104.27557 * 206.07067 * 6 5 4 9 9 O 1.42101 * 104.27590 * 333.92739 * 6 5 4 10 10 C 1.38095 * 120.07038 * 359.74439 * 5 4 3 11 11 C 1.38838 * 120.03930 * 179.97438 * 2 1 3 12 12 N 1.39943 * 120.07074 * 0.02562 * 11 2 1 13 13 C 1.34772 * 120.00188 * 155.46404 * 12 11 2 14 14 O 1.21584 * 120.00474 * 354.38618 * 13 12 11 15 15 N 1.34787 * 119.99791 * 174.39072 * 13 12 11 16 16 C 1.46500 * 120.00071 * 359.97438 * 15 13 12 17 17 C 1.46495 * 119.99663 * 180.02562 * 15 13 12 18 18 H 1.09001 * 109.47772 * 359.97438 * 17 15 13 19 19 C 1.53002 * 109.46958 * 240.00018 * 17 15 13 20 20 C 1.50701 * 109.47161 * 120.00003 * 17 15 13 21 21 H 1.07995 * 119.99925 * 359.97438 * 20 17 15 22 22 C 1.37881 * 119.99786 * 179.97438 * 20 17 15 23 23 N 1.31514 * 120.00157 * 359.97438 * 22 20 17 24 24 Si 1.86801 * 119.99563 * 179.97438 * 22 20 17 25 25 H 1.48493 * 109.47257 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46910 * 120.00021 * 24 22 20 27 27 H 1.48497 * 109.46936 * 239.99542 * 24 22 20 28 28 H 1.08993 * 109.47091 * 270.02067 * 1 2 3 29 29 H 1.08996 * 109.47456 * 30.02713 * 1 2 3 30 30 H 1.09002 * 109.46727 * 150.02133 * 1 2 3 31 31 H 1.07992 * 119.96665 * 359.97438 * 3 2 1 32 32 H 1.07994 * 119.92492 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47431 * 59.99659 * 7 6 5 34 34 H 1.08995 * 109.47403 * 180.02562 * 7 6 5 35 35 H 1.09008 * 109.47319 * 300.00135 * 7 6 5 36 36 H 1.07990 * 120.03845 * 180.27779 * 10 5 4 37 37 H 0.97002 * 119.99663 * 335.45906 * 12 11 2 38 38 H 1.08996 * 109.46913 * 270.00178 * 16 15 13 39 39 H 1.09002 * 109.47014 * 29.99965 * 16 15 13 40 40 H 1.08995 * 109.46943 * 150.00116 * 16 15 13 41 41 H 1.09000 * 109.47421 * 59.99491 * 19 17 15 42 42 H 1.09001 * 109.46921 * 300.00020 * 19 17 15 43 43 H 1.08999 * 109.47457 * 180.02562 * 19 17 15 44 44 H 0.96998 * 119.99474 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5810 1.1968 0.0005 5 6 4.2762 0.0013 0.0016 6 16 6.0382 0.0078 0.0030 7 6 6.4895 0.0103 1.7599 8 8 6.3937 -1.2282 -0.6014 9 8 6.3845 1.2458 -0.6026 10 6 3.5909 -1.1976 0.0075 11 6 2.2020 -1.2019 0.0005 12 7 1.5046 -2.4152 0.0005 13 6 2.0895 -3.5287 -0.4837 14 8 3.1818 -3.4605 -1.0132 15 7 1.4634 -4.7179 -0.3810 16 6 0.1474 -4.8001 0.2575 17 6 2.0994 -5.9283 -0.9068 18 1 3.0657 -5.6717 -1.3410 19 6 1.2056 -6.5476 -1.9831 20 6 2.2978 -6.9181 0.2121 21 1 1.9821 -6.6701 1.2147 22 6 2.8824 -8.1402 -0.0442 23 7 3.2664 -8.4424 -1.2652 24 14 3.1289 -9.3668 1.3429 25 1 2.6161 -8.7895 2.6113 26 1 2.3912 -10.6181 1.0341 27 1 4.5760 -9.6679 1.4860 28 1 -0.3633 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6583 2.1312 -0.0004 32 1 4.1191 2.1331 0.0010 33 1 6.0855 -0.8809 2.2401 34 1 7.5752 0.0148 1.8562 35 1 6.0789 0.8990 2.2393 36 1 4.1343 -2.1309 0.0128 37 1 0.6003 -2.4547 0.3491 38 1 0.2722 -4.9795 1.3253 39 1 -0.3888 -3.8631 0.1067 40 1 -0.4203 -5.6188 -0.1846 41 1 1.0620 -5.8316 -2.7924 42 1 0.2391 -6.8041 -1.5493 43 1 1.6785 -7.4484 -2.3741 44 1 3.6773 -9.3023 -1.4455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086281382.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:22 Heat of formation + Delta-G solvation = -53.377827 kcal Electronic energy + Delta-G solvation = -28038.230512 eV Core-core repulsion = 24084.040299 eV Total energy + Delta-G solvation = -3954.190213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.61239 -38.76319 -37.03086 -35.87572 -35.66631 -34.70376 -32.95218 -32.70321 -30.11851 -29.64424 -28.85127 -27.28831 -26.28817 -25.23516 -23.39778 -22.01833 -21.17071 -19.33370 -19.13429 -18.12245 -17.30848 -16.51310 -16.19834 -16.07724 -15.90421 -15.35876 -15.22581 -14.94441 -14.65798 -14.18496 -13.97238 -13.72639 -13.42734 -13.30995 -13.21647 -12.85847 -12.72239 -12.63055 -12.31192 -12.20330 -12.00244 -11.94084 -11.73186 -11.60214 -11.49152 -11.09316 -11.08533 -10.88944 -10.77513 -10.68151 -10.40931 -10.21860 -10.19384 -9.43723 -9.17511 -9.04985 -8.45658 -8.07025 -7.60749 -6.09089 -4.17281 0.06173 0.81364 1.34431 2.86510 3.02064 3.24743 3.29417 3.33233 3.35631 3.79390 3.99214 4.12235 4.30343 4.43871 4.60959 4.65261 4.71467 4.82969 5.02538 5.19487 5.22115 5.31768 5.36290 5.45439 5.49152 5.58171 5.74089 5.75214 5.89788 6.04180 6.14236 6.19712 6.31070 6.45255 6.66250 6.76366 6.93457 7.04827 7.08951 7.40316 7.65132 7.75235 8.01639 8.16955 8.52663 8.82715 9.08519 9.49414 10.96339 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.003526 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.286799 B = 7938.940298 C = 9403.791819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.080 4.080 3 C -0.119 4.119 4 C -0.056 4.056 5 C -0.642 4.642 6 S 2.498 3.502 7 C -0.652 4.652 8 O -0.923 6.923 9 O -0.944 6.944 10 C -0.034 4.034 11 C 0.166 3.834 12 N -0.691 5.691 13 C 0.690 3.310 14 O -0.568 6.568 15 N -0.600 5.600 16 C 0.086 3.914 17 C 0.270 3.730 18 H 0.068 0.932 19 C -0.148 4.148 20 C -0.526 4.526 21 H 0.059 0.941 22 C 0.065 3.935 23 N -0.886 5.886 24 Si 0.900 3.100 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.171 0.829 37 H 0.404 0.596 38 H 0.051 0.949 39 H 0.042 0.958 40 H 0.079 0.921 41 H 0.012 0.988 42 H 0.030 0.970 43 H 0.096 0.904 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.589 18.974 7.423 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.084 4.084 3 C -0.138 4.138 4 C -0.077 4.077 5 C -0.730 4.730 6 S 2.677 3.323 7 C -0.801 4.801 8 O -0.920 6.920 9 O -0.941 6.941 10 C -0.055 4.055 11 C 0.068 3.932 12 N -0.339 5.339 13 C 0.392 3.608 14 O -0.445 6.445 15 N -0.335 5.335 16 C -0.058 4.058 17 C 0.170 3.830 18 H 0.086 0.914 19 C -0.207 4.207 20 C -0.565 4.565 21 H 0.078 0.922 22 C -0.138 4.138 23 N -0.524 5.524 24 Si 0.727 3.273 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.209 1.209 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.149 0.851 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.188 0.812 37 H 0.242 0.758 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.031 0.969 42 H 0.049 0.951 43 H 0.114 0.886 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.212 18.674 6.208 19.939 hybrid contribution -1.178 -0.785 1.570 2.114 sum -4.390 17.888 7.778 19.994 Atomic orbital electron populations 1.20818 0.90727 1.03473 1.02621 1.19858 0.96225 0.91890 1.00432 1.20845 0.93983 0.96909 1.02112 1.20752 0.94548 0.96355 0.95999 1.30410 1.25623 0.98875 1.18050 1.05231 0.74601 0.74777 0.77656 1.30241 1.12162 1.12014 1.25713 1.93670 1.81754 1.43917 1.72653 1.93558 1.82458 1.44854 1.73231 1.21412 0.93355 0.98442 0.92310 1.17469 0.91388 0.84595 0.99798 1.43062 1.18625 1.06618 1.65642 1.16082 0.84507 0.80374 0.79799 1.90904 1.20024 1.84452 1.49075 1.47663 1.19077 1.06863 1.59863 1.21521 0.85253 1.00806 0.98186 1.18971 0.93092 0.78413 0.92508 0.91426 1.22122 0.99116 1.02017 0.97398 1.21327 1.40737 0.99849 0.94610 0.92246 1.24888 0.95067 0.98020 0.95776 1.69885 1.40612 1.22825 1.19047 0.86425 0.77991 0.80862 0.81985 1.19905 1.20958 1.20861 0.90622 0.90674 0.91377 0.85106 0.84461 0.84838 0.85187 0.85223 0.81180 0.75826 0.93039 0.93898 0.90198 0.96903 0.95135 0.88581 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.45 36.00 0.34 -0.65 16 2 C -0.08 -0.94 5.90 -104.43 -0.62 -1.56 16 3 C -0.12 -1.25 9.70 -39.61 -0.38 -1.63 16 4 C -0.06 -0.64 9.47 -39.55 -0.37 -1.02 16 5 C -0.64 -8.73 5.65 -39.61 -0.22 -8.95 16 6 S 2.50 30.84 5.80 -107.50 -0.62 30.22 16 7 C -0.65 -4.85 10.80 101.05 1.09 -3.76 16 8 O -0.92 -16.14 17.13 -57.54 -0.99 -17.12 16 9 O -0.94 -13.28 17.12 -57.54 -0.99 -14.27 16 10 C -0.03 -0.56 8.14 -39.39 -0.32 -0.88 16 11 C 0.17 2.52 6.41 -83.69 -0.54 1.98 16 12 N -0.69 -10.79 4.86 -14.22 -0.07 -10.86 16 13 C 0.69 14.31 8.09 -86.91 -0.70 13.61 16 14 O -0.57 -14.13 12.84 5.29 0.07 -14.06 16 15 N -0.60 -12.46 2.75 -181.01 -0.50 -12.96 16 16 C 0.09 1.35 9.49 59.85 0.57 1.92 16 17 C 0.27 6.80 2.64 -69.08 -0.18 6.62 16 18 H 0.07 2.00 6.90 -51.93 -0.36 1.64 16 19 C -0.15 -3.48 8.95 37.16 0.33 -3.15 16 20 C -0.53 -13.97 8.37 -34.44 -0.29 -14.25 16 21 H 0.06 1.55 7.64 -52.49 -0.40 1.15 16 22 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 23 N -0.89 -24.87 11.32 55.43 0.63 -24.25 16 24 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 30 H 0.07 0.58 6.98 -51.93 -0.36 0.22 16 31 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 32 H 0.14 1.24 7.57 -52.49 -0.40 0.84 16 33 H 0.13 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.13 0.66 8.14 -51.92 -0.42 0.23 16 36 H 0.17 3.35 5.31 -52.49 -0.28 3.07 16 37 H 0.40 4.89 5.08 -40.82 -0.21 4.69 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.04 0.50 6.29 -51.93 -0.33 0.17 16 40 H 0.08 1.26 6.43 -51.93 -0.33 0.93 16 41 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.03 0.65 6.66 -51.93 -0.35 0.30 16 43 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 44 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -37.10 369.24 -9.15 -46.25 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.84 Total: 5.76 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -1.39 Total: -10.06 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.06 Total: -48.06 kcal Atomic # 8 Polarization: -43.55 SS G_CDS: -1.90 Total: -45.45 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 30.84 SS G_CDS: -0.62 Total: 30.22 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.10 -9.15 -46.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086281382.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.124 kcal (2) G-P(sol) polarization free energy of solvation -37.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds