Wall clock time and date at job start Sat Apr 11 2020 05:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35920 * 117.00363 * 2 1 4 4 C 1.38759 * 119.98853 * 179.97438 * 3 2 1 5 5 C 1.38043 * 120.01352 * 179.97438 * 4 3 2 6 6 C 1.38875 * 119.98962 * 0.02562 * 5 4 3 7 7 N 1.40168 * 120.01748 * 179.97438 * 6 5 4 8 8 N 1.28475 * 124.95173 * 222.70799 * 7 6 5 9 9 C 1.31942 * 110.10261 * 180.30913 * 8 7 6 10 10 C 1.47534 * 126.45192 * 179.68413 * 9 8 7 11 11 O 1.21612 * 120.00072 * 185.73961 * 10 9 8 12 12 N 1.34785 * 119.99937 * 5.73370 * 10 9 8 13 13 C 1.36898 * 119.99979 * 184.68442 * 12 10 9 14 14 H 1.08011 * 119.99887 * 327.07542 * 13 12 10 15 15 C 1.39015 * 119.99943 * 147.07893 * 13 12 10 16 16 N 1.31378 * 120.00097 * 4.85015 * 15 13 12 17 17 Si 1.86803 * 120.00080 * 184.85152 * 15 13 12 18 18 H 1.48504 * 109.47001 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47125 * 119.99679 * 17 15 13 20 20 H 1.48496 * 109.47209 * 239.99842 * 17 15 13 21 21 C 1.46495 * 120.00076 * 4.68761 * 12 10 9 22 22 C 1.47205 * 109.47075 * 276.57669 * 21 12 10 23 23 N 7.20346 * 82.71125 * 8.67046 * 2 1 3 24 24 C 1.41568 * 107.09643 * 359.71088 * 9 8 7 25 25 C 1.35345 * 105.55871 * 0.02562 * 24 9 8 26 26 C 1.50698 * 126.43005 * 179.97438 * 25 24 9 27 27 C 1.38880 * 119.97004 * 0.27046 * 6 5 4 28 28 C 1.38052 * 119.98224 * 359.42396 * 27 6 5 29 29 H 1.09000 * 109.46777 * 299.99604 * 1 2 3 30 30 H 1.08998 * 109.47577 * 59.99938 * 1 2 3 31 31 H 1.09000 * 109.47184 * 180.02562 * 1 2 3 32 32 H 1.08002 * 119.99699 * 359.97438 * 4 3 2 33 33 H 1.08006 * 120.00774 * 180.02562 * 5 4 3 34 34 H 0.97006 * 119.99845 * 180.02562 * 16 15 13 35 35 H 1.09003 * 109.47102 * 36.57639 * 21 12 10 36 36 H 1.08996 * 109.47423 * 156.57390 * 21 12 10 37 37 H 1.07994 * 127.22029 * 180.02562 * 24 9 8 38 38 H 1.09001 * 109.46851 * 85.21629 * 26 25 24 39 39 H 1.09000 * 109.47496 * 205.21616 * 26 25 24 40 40 H 1.09000 * 109.46941 * 325.21832 * 26 25 24 41 41 H 1.07996 * 120.00352 * 179.70747 * 27 6 5 42 42 H 1.07998 * 119.98594 * 180.27458 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 3.4318 1.2833 0.0005 5 6 4.0591 2.5129 0.0000 6 6 3.3031 3.6779 -0.0005 7 7 3.9395 4.9268 -0.0005 8 7 3.5839 5.9340 0.7133 9 6 4.3804 6.9595 0.4792 10 6 4.2936 8.2960 1.0981 11 8 5.0260 9.1900 0.7197 12 7 3.4025 8.5261 2.0828 13 6 3.2547 9.7886 2.5910 14 1 4.1053 10.4522 2.6445 15 6 2.0100 10.2166 3.0382 16 7 0.9973 9.3800 3.0622 17 14 1.7773 11.9813 3.6051 18 1 3.0623 12.7149 3.4799 19 1 0.7475 12.6402 2.7621 20 1 1.3369 11.9917 5.0232 21 6 2.5921 7.4251 2.6093 22 6 1.4194 7.2212 1.7432 23 7 0.5151 7.0636 1.0772 24 6 5.3335 6.5362 -0.4782 25 6 5.0241 5.2476 -0.7532 26 6 5.7437 4.3409 -1.7180 27 6 1.9163 3.6049 0.0051 28 6 1.2901 2.3746 -0.0007 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 4.0197 0.3773 0.0014 33 1 5.1377 2.5691 0.0000 34 1 0.1287 9.6788 3.3740 35 1 3.1892 6.5135 2.6331 36 1 2.2604 7.6684 3.6187 37 1 6.1385 7.1192 -0.9004 38 1 6.5919 3.8758 -1.2157 39 1 5.0603 3.5674 -2.0685 40 1 6.0995 4.9235 -2.5678 41 1 1.3278 4.5105 0.0095 42 1 0.2116 2.3178 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092370903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:24 Heat of formation + Delta-G solvation = 91.402948 kcal Electronic energy + Delta-G solvation = -29130.846615 eV Core-core repulsion = 25079.783367 eV Total energy + Delta-G solvation = -4051.063248 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.52363 -40.30799 -38.53332 -37.64959 -35.59722 -34.13030 -33.07247 -32.68282 -31.69404 -31.27348 -29.08890 -27.47800 -27.37247 -26.74416 -25.31447 -23.42310 -22.91116 -21.69075 -20.35215 -18.93193 -18.45753 -17.72409 -17.46009 -16.67009 -16.34821 -16.04922 -15.86575 -15.38904 -14.98200 -14.74840 -14.10385 -14.08994 -13.80007 -13.76259 -13.33565 -13.26431 -13.06414 -12.98962 -12.78515 -12.70527 -12.68258 -12.29622 -11.94501 -11.76114 -11.49791 -11.37334 -11.18782 -11.14976 -11.08834 -10.52196 -10.47088 -10.33871 -9.99277 -9.35580 -9.26456 -9.08907 -8.81300 -8.59714 -8.01802 -7.88183 -6.45734 -4.08837 0.82382 1.02476 2.19771 2.54885 2.64944 2.95535 3.17471 3.25539 3.31235 3.41849 3.87232 4.15314 4.26618 4.43697 4.51008 4.54219 4.64209 4.77167 4.83520 4.85152 4.91915 4.99898 5.02539 5.14853 5.19165 5.21790 5.39281 5.44853 5.59521 5.64131 5.72428 5.79427 5.92690 6.00592 6.05244 6.16679 6.24538 6.27687 6.46204 6.75645 6.85116 6.98964 7.27317 7.45799 8.03753 8.25800 8.42535 9.00770 9.07130 9.19584 9.78292 10.59111 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014684 B = 0.003452 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.398702 B = 8109.924404 C = 9735.367628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.130 3.870 4 C -0.137 4.137 5 C -0.078 4.078 6 C 0.102 3.898 7 N -0.245 5.245 8 N -0.264 5.264 9 C 0.021 3.979 10 C 0.536 3.464 11 O -0.564 6.564 12 N -0.427 5.427 13 C -0.308 4.308 14 H 0.106 0.894 15 C 0.037 3.963 16 N -0.879 5.879 17 Si 0.934 3.066 18 H -0.265 1.265 19 H -0.281 1.281 20 H -0.280 1.280 21 C 0.225 3.775 22 C 0.279 3.721 23 N -0.498 5.498 24 C -0.178 4.178 25 C 0.004 3.996 26 C -0.083 4.083 27 C -0.056 4.056 28 C -0.191 4.191 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.274 0.726 35 H 0.089 0.911 36 H 0.123 0.877 37 H 0.161 0.839 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.141 0.859 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.155 -19.540 -4.688 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.084 3.916 4 C -0.157 4.157 5 C -0.098 4.098 6 C 0.012 3.988 7 N -0.028 5.028 8 N -0.096 5.096 9 C -0.141 4.141 10 C 0.323 3.677 11 O -0.445 6.445 12 N -0.147 5.147 13 C -0.436 4.436 14 H 0.123 0.877 15 C -0.167 4.167 16 N -0.517 5.517 17 Si 0.760 3.240 18 H -0.189 1.189 19 H -0.207 1.207 20 H -0.206 1.206 21 C 0.098 3.902 22 C -0.038 4.038 23 N -0.179 5.179 24 C -0.205 4.205 25 C -0.117 4.117 26 C -0.141 4.141 27 C -0.076 4.076 28 C -0.210 4.210 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.141 0.859 37 H 0.179 0.821 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.159 0.841 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.109 -19.871 -5.147 20.556 hybrid contribution 0.210 1.373 0.143 1.396 sum 1.319 -18.498 -5.004 19.208 Atomic orbital electron populations 1.23116 0.78026 1.04105 1.01800 1.86064 1.21690 1.26610 1.88488 1.19099 0.92347 0.84254 0.95889 1.20195 0.91294 0.97887 1.06287 1.20858 1.00296 0.89855 0.98761 1.17385 0.91628 0.81838 1.07950 1.42675 1.21703 1.08483 1.29931 1.74029 1.24302 0.94898 1.16407 1.22569 0.95949 0.94456 1.01127 1.16893 0.85361 0.84532 0.80895 1.90642 1.45366 1.44380 1.64062 1.43356 1.32860 1.08278 1.30169 1.19711 0.95718 0.89164 1.38999 0.87661 1.25515 0.94610 0.99890 0.96685 1.69673 1.01977 1.34886 1.45183 0.85744 0.78782 0.81640 0.77853 1.18945 1.20658 1.20579 1.18869 0.85248 0.90001 0.96076 1.28775 0.93335 0.89491 0.92245 1.80694 1.12722 1.12773 1.11744 1.21483 1.03089 0.93590 1.02359 1.21493 0.92990 0.96828 1.00419 1.20393 0.99123 0.97824 0.96729 1.21018 0.92561 0.98744 0.95264 1.21163 1.00608 0.91295 1.07957 0.92279 0.92405 0.88073 0.84130 0.84194 0.91526 0.89311 0.85947 0.82143 0.90480 0.91262 0.89841 0.84102 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.06 10.49 -19.49 -0.20 -3.26 16 3 C 0.13 1.39 6.69 -39.20 -0.26 1.13 16 4 C -0.14 -1.35 9.98 -39.46 -0.39 -1.74 16 5 C -0.08 -0.84 8.23 -39.42 -0.32 -1.17 16 6 C 0.10 1.45 5.98 -83.57 -0.50 0.95 16 7 N -0.25 -4.10 3.43 -6.83 -0.02 -4.12 16 8 N -0.26 -5.27 7.24 33.41 0.24 -5.02 16 9 C 0.02 0.44 6.69 -82.76 -0.55 -0.11 16 10 C 0.54 13.50 7.56 -12.47 -0.09 13.41 16 11 O -0.56 -15.53 16.72 5.27 0.09 -15.44 16 12 N -0.43 -10.83 2.59 -119.12 -0.31 -11.14 16 13 C -0.31 -8.20 9.08 -15.00 -0.14 -8.34 16 14 H 0.11 2.87 7.55 -52.48 -0.40 2.47 16 15 C 0.04 0.95 5.33 -17.46 -0.09 0.86 16 16 N -0.88 -22.87 8.98 55.50 0.50 -22.37 16 17 Si 0.93 20.37 29.56 -169.99 -5.02 15.35 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 C 0.23 5.10 4.75 -6.83 -0.03 5.07 16 22 C 0.28 6.74 11.61 -20.82 -0.24 6.50 16 23 N -0.50 -12.52 18.53 42.08 0.78 -11.74 16 24 C -0.18 -3.18 10.73 -39.34 -0.42 -3.60 16 25 C 0.00 0.06 6.74 -81.84 -0.55 -0.49 16 26 C -0.08 -0.81 8.84 36.00 0.32 -0.49 16 27 C -0.06 -0.81 9.75 -39.41 -0.38 -1.19 16 28 C -0.19 -2.22 9.03 -39.46 -0.36 -2.58 16 29 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 30 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.14 1.25 6.87 -52.48 -0.36 0.89 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.09 1.82 5.98 -51.93 -0.31 1.51 16 36 H 0.12 2.78 6.74 -51.93 -0.35 2.43 16 37 H 0.16 2.63 8.06 -52.49 -0.42 2.20 16 38 H 0.08 0.60 8.04 -51.93 -0.42 0.18 16 39 H 0.07 0.63 6.86 -51.93 -0.36 0.27 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.14 2.41 8.06 -52.49 -0.42 1.99 16 42 H 0.14 1.34 6.29 -52.49 -0.33 1.01 16 LS Contribution 362.05 15.07 5.46 5.46 Total: -1.00 -33.22 362.05 -6.10 -39.31 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.57 Total: 3.64 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -3.04 Total: 9.35 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 1.19 Total: -54.40 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.12 Total: -18.71 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.22 -6.10 -39.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092370903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.715 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds