Wall clock time and date at job start Sat Apr 11 2020 05:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35920 * 117.00363 * 2 1 4 4 C 1.38759 * 119.98853 * 179.97438 * 3 2 1 5 5 C 1.38043 * 120.01352 * 179.97438 * 4 3 2 6 6 C 1.38875 * 119.98962 * 0.02562 * 5 4 3 7 7 N 1.40168 * 120.01748 * 179.97438 * 6 5 4 8 8 N 1.28475 * 124.95173 * 222.70799 * 7 6 5 9 9 C 1.31942 * 110.10261 * 180.30913 * 8 7 6 10 10 C 1.47534 * 126.45192 * 179.68413 * 9 8 7 11 11 O 1.21612 * 120.00072 * 185.73961 * 10 9 8 12 12 N 1.34785 * 119.99937 * 5.73370 * 10 9 8 13 13 C 1.36898 * 119.99979 * 184.68442 * 12 10 9 14 14 H 1.08011 * 119.99887 * 327.07542 * 13 12 10 15 15 C 1.39015 * 119.99943 * 147.07893 * 13 12 10 16 16 N 1.31378 * 120.00097 * 4.85015 * 15 13 12 17 17 Si 1.86803 * 120.00080 * 184.85152 * 15 13 12 18 18 H 1.48504 * 109.47001 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47125 * 119.99679 * 17 15 13 20 20 H 1.48496 * 109.47209 * 239.99842 * 17 15 13 21 21 C 1.46495 * 120.00076 * 4.68761 * 12 10 9 22 22 C 1.47205 * 109.47075 * 276.57669 * 21 12 10 23 23 N 7.20346 * 82.71125 * 8.67046 * 2 1 3 24 24 C 1.41568 * 107.09643 * 359.71088 * 9 8 7 25 25 C 1.35345 * 105.55871 * 0.02562 * 24 9 8 26 26 C 1.50698 * 126.43005 * 179.97438 * 25 24 9 27 27 C 1.38880 * 119.97004 * 0.27046 * 6 5 4 28 28 C 1.38052 * 119.98224 * 359.42396 * 27 6 5 29 29 H 1.09000 * 109.46777 * 299.99604 * 1 2 3 30 30 H 1.08998 * 109.47577 * 59.99938 * 1 2 3 31 31 H 1.09000 * 109.47184 * 180.02562 * 1 2 3 32 32 H 1.08002 * 119.99699 * 359.97438 * 4 3 2 33 33 H 1.08006 * 120.00774 * 180.02562 * 5 4 3 34 34 H 0.97006 * 119.99845 * 180.02562 * 16 15 13 35 35 H 1.09003 * 109.47102 * 36.57639 * 21 12 10 36 36 H 1.08996 * 109.47423 * 156.57390 * 21 12 10 37 37 H 1.07994 * 127.22029 * 180.02562 * 24 9 8 38 38 H 1.09001 * 109.46851 * 85.21629 * 26 25 24 39 39 H 1.09000 * 109.47496 * 205.21616 * 26 25 24 40 40 H 1.09000 * 109.46941 * 325.21832 * 26 25 24 41 41 H 1.07996 * 120.00352 * 179.70747 * 27 6 5 42 42 H 1.07998 * 119.98594 * 180.27458 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 3.4318 1.2833 0.0005 5 6 4.0591 2.5129 0.0000 6 6 3.3031 3.6779 -0.0005 7 7 3.9395 4.9268 -0.0005 8 7 3.5839 5.9340 0.7133 9 6 4.3804 6.9595 0.4792 10 6 4.2936 8.2960 1.0981 11 8 5.0260 9.1900 0.7197 12 7 3.4025 8.5261 2.0828 13 6 3.2547 9.7886 2.5910 14 1 4.1053 10.4522 2.6445 15 6 2.0100 10.2166 3.0382 16 7 0.9973 9.3800 3.0622 17 14 1.7773 11.9813 3.6051 18 1 3.0623 12.7149 3.4799 19 1 0.7475 12.6402 2.7621 20 1 1.3369 11.9917 5.0232 21 6 2.5921 7.4251 2.6093 22 6 1.4194 7.2212 1.7432 23 7 0.5151 7.0636 1.0772 24 6 5.3335 6.5362 -0.4782 25 6 5.0241 5.2476 -0.7532 26 6 5.7437 4.3409 -1.7180 27 6 1.9163 3.6049 0.0051 28 6 1.2901 2.3746 -0.0007 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 4.0197 0.3773 0.0014 33 1 5.1377 2.5691 0.0000 34 1 0.1287 9.6788 3.3740 35 1 3.1892 6.5135 2.6331 36 1 2.2604 7.6684 3.6187 37 1 6.1385 7.1192 -0.9004 38 1 6.5919 3.8758 -1.2157 39 1 5.0603 3.5674 -2.0685 40 1 6.0995 4.9235 -2.5678 41 1 1.3278 4.5105 0.0095 42 1 0.2116 2.3178 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092370903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:23 Heat of formation + Delta-G solvation = 71.414820 kcal Electronic energy + Delta-G solvation = -29131.713365 eV Core-core repulsion = 25079.783367 eV Total energy + Delta-G solvation = -4051.929998 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.86300 -41.16915 -40.37399 -38.57883 -37.57387 -36.11692 -34.39846 -33.81592 -33.51050 -32.20707 -30.14915 -29.21551 -28.22568 -27.92960 -27.05006 -24.83092 -23.85439 -22.97560 -21.58378 -20.57446 -19.69177 -19.29962 -18.66628 -18.23551 -17.69568 -17.47358 -16.75201 -16.68485 -16.54627 -15.91587 -15.81000 -15.30868 -15.04338 -14.94226 -14.80496 -14.66717 -14.45109 -14.12111 -13.95035 -13.76553 -13.71598 -13.64238 -13.39253 -13.13909 -13.01950 -12.94657 -12.75377 -12.49790 -12.27730 -12.15847 -12.09044 -12.00235 -11.55317 -11.06065 -10.79490 -10.52118 -10.22669 -9.92193 -9.86297 -9.06735 -8.43401 -6.14599 -0.18229 0.12947 0.75235 1.18434 1.41269 1.45608 1.47294 1.58512 1.98248 2.25525 2.27673 2.38367 2.49019 2.57949 2.97580 3.09144 3.50989 3.65852 3.69110 3.72689 3.77480 3.96007 4.05959 4.24901 4.37050 4.37924 4.40504 4.48190 4.63244 4.67681 4.72933 4.78997 4.80498 4.87637 4.90078 5.03302 5.07560 5.13752 5.19519 5.37416 5.39701 5.47044 6.00297 6.09551 6.27573 6.36096 6.90683 7.03156 7.11806 7.23160 7.81939 8.59741 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014684 B = 0.003452 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.398702 B = 8109.924404 C = 9735.367628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.319 6.319 3 C 0.137 3.863 4 C -0.127 4.127 5 C -0.061 4.061 6 C 0.069 3.931 7 N -0.238 5.238 8 N -0.282 5.282 9 C -0.017 4.017 10 C 0.530 3.470 11 O -0.601 6.601 12 N -0.440 5.440 13 C -0.338 4.338 14 H 0.089 0.911 15 C 0.005 3.995 16 N -0.895 5.895 17 Si 0.997 3.003 18 H -0.266 1.266 19 H -0.286 1.286 20 H -0.262 1.262 21 C 0.236 3.764 22 C 0.288 3.712 23 N -0.520 5.520 24 C -0.199 4.199 25 C 0.028 3.972 26 C -0.081 4.081 27 C -0.076 4.076 28 C -0.193 4.193 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.126 0.874 32 H 0.174 0.826 33 H 0.167 0.833 34 H 0.275 0.725 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.169 0.831 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.803 -22.809 -5.265 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.232 6.232 3 C 0.091 3.909 4 C -0.146 4.146 5 C -0.081 4.081 6 C -0.020 4.020 7 N -0.021 5.021 8 N -0.116 5.116 9 C -0.177 4.177 10 C 0.319 3.681 11 O -0.484 6.484 12 N -0.159 5.159 13 C -0.465 4.465 14 H 0.107 0.893 15 C -0.197 4.197 16 N -0.533 5.533 17 Si 0.820 3.180 18 H -0.190 1.190 19 H -0.212 1.212 20 H -0.187 1.187 21 C 0.109 3.891 22 C -0.029 4.029 23 N -0.201 5.201 24 C -0.226 4.226 25 C -0.094 4.094 26 C -0.139 4.139 27 C -0.096 4.096 28 C -0.212 4.212 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.144 0.856 32 H 0.192 0.808 33 H 0.185 0.815 34 H 0.085 0.915 35 H 0.127 0.873 36 H 0.138 0.862 37 H 0.186 0.814 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.735 -23.171 -5.707 23.926 hybrid contribution -0.059 2.120 0.246 2.135 sum 1.677 -21.051 -5.461 21.812 Atomic orbital electron populations 1.23402 0.76397 1.05975 1.02197 1.86077 1.23377 1.25760 1.87977 1.19269 0.92947 0.84228 0.94504 1.20585 0.91113 0.98594 1.04272 1.21095 1.01343 0.88647 0.96967 1.17726 0.91797 0.81686 1.10831 1.42951 1.21724 1.08534 1.28886 1.73875 1.24500 0.95502 1.17714 1.22137 0.98522 0.93622 1.03412 1.17423 0.84387 0.85875 0.80437 1.90580 1.46590 1.46127 1.65137 1.43510 1.33265 1.08540 1.30588 1.19739 0.95984 0.90064 1.40741 0.89291 1.26235 0.93871 1.03373 0.96241 1.69761 1.02107 1.36146 1.45321 0.84813 0.78234 0.76890 0.78051 1.18993 1.21189 1.18707 1.18891 0.84758 0.90135 0.95291 1.29034 0.93221 0.88799 0.91895 1.80668 1.13526 1.13563 1.12364 1.21667 1.03336 0.95105 1.02516 1.22215 0.91570 0.96376 0.99286 1.20655 0.99772 0.97401 0.96076 1.20821 0.92824 0.98447 0.97459 1.21234 1.01410 0.90763 1.07830 0.92118 0.91807 0.85567 0.80826 0.81545 0.91451 0.87294 0.86180 0.81385 0.87278 0.89821 0.88313 0.87779 0.83371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.32 -5.11 10.49 -92.64 -0.97 -6.08 16 3 C 0.14 2.53 6.69 22.52 0.15 2.68 16 4 C -0.13 -1.95 9.98 22.35 0.22 -1.73 16 5 C -0.06 -1.10 8.23 22.38 0.18 -0.91 16 6 C 0.07 1.86 5.98 38.11 0.23 2.09 16 7 N -0.24 -7.81 3.43 -175.51 -0.60 -8.42 16 8 N -0.28 -11.52 7.24 -48.20 -0.35 -11.87 16 9 C -0.02 -0.78 6.69 42.40 0.28 -0.49 16 10 C 0.53 28.10 7.56 86.69 0.66 28.76 16 11 O -0.60 -34.95 16.72 -4.07 -0.07 -35.02 16 12 N -0.44 -23.38 2.59 -649.03 -1.68 -25.06 16 13 C -0.34 -18.76 9.08 84.09 0.76 -17.99 16 14 H 0.09 5.12 7.55 -2.91 -0.02 5.09 16 15 C 0.00 0.26 5.33 84.95 0.45 0.71 16 16 N -0.90 -47.53 8.98 21.67 0.19 -47.34 16 17 Si 1.00 42.47 29.56 68.60 2.03 44.50 16 18 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 19 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 21 C 0.24 11.12 4.75 84.58 0.40 11.52 16 22 C 0.29 14.40 11.61 89.46 1.04 15.44 16 23 N -0.52 -27.02 18.53 19.98 0.37 -26.65 16 24 C -0.20 -7.15 10.73 22.42 0.24 -6.91 16 25 C 0.03 0.79 6.74 41.27 0.28 1.07 16 26 C -0.08 -1.27 8.84 71.24 0.63 -0.65 16 27 C -0.08 -2.18 9.75 22.38 0.22 -1.97 16 28 C -0.19 -4.26 9.03 22.35 0.20 -4.06 16 29 H 0.06 0.62 7.66 -2.39 -0.02 0.60 16 30 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 31 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.17 2.10 6.87 -2.91 -0.02 2.08 16 34 H 0.28 14.04 8.31 -92.70 -0.77 13.27 16 35 H 0.11 4.65 5.98 -2.39 -0.01 4.64 16 36 H 0.12 5.67 6.74 -2.39 -0.02 5.65 16 37 H 0.17 5.57 8.06 -2.91 -0.02 5.55 16 38 H 0.11 1.11 8.04 -2.39 -0.02 1.10 16 39 H 0.08 1.13 6.86 -2.39 -0.02 1.11 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.10 3.77 8.06 -2.91 -0.02 3.75 16 42 H 0.15 2.78 6.29 -2.91 -0.02 2.76 16 Total: -1.00 -76.35 362.05 7.06 -69.29 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 1.08 Total: 17.83 kcal Atomic # 6 Polarization: 21.75 SS G_CDS: 7.06 Total: 28.81 kcal Atomic # 7 Polarization: -117.26 SS G_CDS: -2.07 Total: -119.32 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -1.04 Total: -41.10 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -76.35 7.06 -69.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092370903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.704 kcal (2) G-P(sol) polarization free energy of solvation -76.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds