Wall clock time and date at job start Sat Apr 11 2020 05:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46706 * 2 1 4 4 C 1.38304 * 119.96454 * 270.01767 * 3 2 1 5 5 C 1.38261 * 120.14022 * 180.02562 * 4 3 2 6 6 C 1.38126 * 120.07108 * 359.67354 * 5 4 3 7 7 C 1.38856 * 119.92905 * 0.60112 * 6 5 4 8 8 N 1.39923 * 120.07131 * 179.69521 * 7 6 5 9 9 C 1.34779 * 120.00301 * 326.55527 * 8 7 6 10 10 O 1.21290 * 119.99862 * 354.72439 * 9 8 7 11 11 C 1.50697 * 120.00295 * 174.72673 * 9 8 7 12 12 N 1.46502 * 109.47333 * 180.02562 * 11 9 8 13 13 S 1.65600 * 120.00203 * 165.00237 * 12 11 9 14 14 O 1.42100 * 104.27611 * 181.06877 * 13 12 11 15 15 O 1.42108 * 104.27198 * 308.92632 * 13 12 11 16 16 C 1.81397 * 104.44967 * 64.99403 * 13 12 11 17 17 C 1.53004 * 109.47109 * 180.02562 * 16 13 12 18 18 C 1.50700 * 109.47302 * 180.02562 * 17 16 13 19 19 H 1.08002 * 119.99637 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00036 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00048 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00160 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46996 * 60.00034 * 22 20 18 24 24 H 1.48500 * 109.47286 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46811 * 300.00223 * 22 20 18 26 26 C 1.38091 * 119.96275 * 90.00084 * 3 2 1 27 27 H 1.09004 * 109.47139 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47338 * 300.00288 * 1 2 3 29 29 H 1.09000 * 109.47013 * 60.00234 * 1 2 3 30 30 H 1.08999 * 109.47338 * 239.99712 * 2 1 3 31 31 H 1.09000 * 109.47013 * 119.99766 * 2 1 3 32 32 H 1.08000 * 119.92888 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.96307 * 179.97438 * 5 4 3 34 34 H 1.07999 * 120.03762 * 180.32122 * 6 5 4 35 35 H 0.97002 * 120.00040 * 146.54739 * 8 7 6 36 36 H 1.09000 * 109.47076 * 59.99496 * 11 9 8 37 37 H 1.08999 * 109.46876 * 299.99884 * 11 9 8 38 38 H 0.97001 * 119.99800 * 344.99522 * 12 11 9 39 39 H 1.08996 * 109.47363 * 300.00481 * 16 13 12 40 40 H 1.09002 * 109.46799 * 60.00337 * 16 13 12 41 41 H 1.09008 * 109.46886 * 300.00277 * 17 16 13 42 42 H 1.08993 * 109.47115 * 59.99799 * 17 16 13 43 43 H 0.97002 * 119.99924 * 179.97438 * 21 20 18 44 44 H 1.07992 * 120.03670 * 0.03950 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0723 -1.1982 5 6 2.7234 3.3756 -1.2024 6 6 2.9497 4.0336 -0.0092 7 6 2.7254 3.3805 1.1955 8 7 2.9597 4.0421 2.4059 9 6 3.9563 4.9448 2.4987 10 8 4.7099 5.1144 1.5636 11 6 4.1342 5.7434 3.7642 12 7 5.2766 6.6483 3.6141 13 16 5.4883 7.8984 4.6793 14 8 6.6571 8.5600 4.2153 15 8 4.2306 8.5596 4.6979 16 6 5.8049 7.0880 6.2710 17 6 6.0188 8.1508 7.3508 18 6 6.2825 7.4776 8.6730 19 1 6.2957 6.3995 8.7369 20 6 6.5069 8.2379 9.8010 21 7 6.4913 9.5506 9.7231 22 14 6.8330 7.4035 11.4402 23 1 8.0476 6.5561 11.3313 24 1 7.0407 8.4349 12.4881 25 1 5.6692 6.5560 11.8043 26 6 2.2621 2.0711 1.1964 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0817 1.5615 -2.1325 33 1 2.9023 3.8815 -2.1397 34 1 3.3051 5.0535 -0.0132 35 1 2.4049 3.8512 3.1784 36 1 4.3139 5.0661 4.5990 37 1 3.2329 6.3256 3.9561 38 1 5.9090 6.5151 2.8907 39 1 4.9508 6.4659 6.5383 40 1 6.6965 6.4661 6.1911 41 1 6.8729 8.7733 7.0836 42 1 5.1271 8.7723 7.4305 43 1 6.6488 10.0855 10.5168 44 1 2.0828 1.5618 2.1316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111336437.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:39 Heat of formation + Delta-G solvation = -97.471413 kcal Electronic energy + Delta-G solvation = -26114.039485 eV Core-core repulsion = 22157.937230 eV Total energy + Delta-G solvation = -3956.102254 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.93670 -39.14587 -36.65624 -35.71577 -35.49283 -34.71142 -33.96840 -33.93122 -31.20418 -30.55892 -29.55580 -27.12897 -25.64237 -24.42511 -22.83080 -22.11153 -21.72519 -20.31712 -19.13312 -18.34282 -17.62564 -16.94952 -16.62802 -16.32295 -16.15111 -16.01012 -15.46155 -15.18448 -14.92188 -14.60178 -14.51762 -14.02495 -14.00212 -13.78228 -13.52928 -13.38775 -13.15068 -12.68614 -12.53626 -12.18563 -11.97393 -11.80061 -11.75858 -11.64509 -11.56969 -11.48809 -11.24516 -11.09903 -11.00700 -10.70827 -10.49043 -10.41855 -10.24007 -9.88882 -9.61308 -9.11351 -9.07748 -8.52975 -8.43735 -6.15196 -4.21199 0.68644 0.94232 1.07228 2.20083 2.53898 3.10507 3.24771 3.30088 3.31490 3.47695 4.16358 4.21461 4.33777 4.35219 4.49129 4.62044 4.72450 4.88041 4.92036 4.93512 5.00280 5.02840 5.13856 5.19853 5.20671 5.22710 5.37580 5.49202 5.55443 5.59081 5.67983 5.75975 5.79417 5.98179 6.03151 6.22185 6.29486 6.42809 6.71665 6.89530 7.07961 7.26462 7.32608 7.68122 7.77054 8.13792 8.81868 9.43671 10.95646 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.002033 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.548199 B =13770.296836 C =14983.231527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.065 4.065 4 C -0.135 4.135 5 C -0.097 4.097 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.674 5.674 9 C 0.515 3.485 10 O -0.509 6.509 11 C 0.100 3.900 12 N -1.118 6.118 13 S 2.596 3.404 14 O -0.960 6.960 15 O -0.966 6.966 16 C -0.589 4.589 17 C 0.027 3.973 18 C -0.522 4.522 19 H 0.061 0.939 20 C 0.058 3.942 21 N -0.889 5.889 22 Si 0.901 3.099 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.276 1.276 26 C -0.144 4.144 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.415 0.585 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.423 0.577 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.034 0.966 42 H 0.035 0.965 43 H 0.266 0.734 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.106 -18.940 -19.000 29.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.065 4.065 4 C -0.153 4.153 5 C -0.115 4.115 6 C -0.146 4.146 7 C 0.058 3.942 8 N -0.320 5.320 9 C 0.302 3.698 10 O -0.382 6.382 11 C -0.031 4.031 12 N -0.878 5.878 13 S 2.693 3.307 14 O -0.950 6.950 15 O -0.955 6.955 16 C -0.723 4.723 17 C -0.012 4.012 18 C -0.561 4.561 19 H 0.079 0.921 20 C -0.145 4.145 21 N -0.527 5.527 22 Si 0.728 3.272 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.164 4.164 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.152 0.848 35 H 0.251 0.749 36 H 0.118 0.882 37 H 0.133 0.867 38 H 0.259 0.741 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.702 -17.624 -19.650 28.873 hybrid contribution 0.266 -1.152 1.413 1.842 sum -11.436 -18.776 -18.237 28.564 Atomic orbital electron populations 1.21751 0.94576 1.01775 1.02322 1.20549 0.96258 0.92406 1.03002 1.19665 0.98264 0.96080 0.92524 1.21013 1.01562 0.95241 0.97512 1.21035 0.98066 0.94686 0.97760 1.21181 1.01415 1.01025 0.90954 1.17702 0.99504 0.91391 0.85625 1.43487 1.34248 1.41489 1.12790 1.20799 0.79593 0.79387 0.90060 1.90724 1.43061 1.65011 1.39423 1.21029 0.92378 0.94062 0.95619 1.55721 1.35636 1.49122 1.47293 1.05572 0.74343 0.74028 0.76727 1.93573 1.50254 1.71507 1.79657 1.93542 1.43456 1.71730 1.86816 1.30465 1.10490 1.13228 1.18107 1.18973 0.98748 0.91666 0.91776 1.20949 1.50050 0.93058 0.92075 0.92094 1.25070 0.95063 0.94918 0.99447 1.69943 1.48570 1.04237 1.29973 0.86521 0.78840 0.79065 0.82774 1.20093 1.21083 1.20108 1.20740 1.04632 0.92532 0.98489 0.92356 0.92483 0.92492 0.90890 0.90958 0.86082 0.85667 0.84762 0.74885 0.88151 0.86667 0.74092 0.86297 0.85901 0.94734 0.94724 0.92441 0.85663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.89 37.16 0.37 -0.34 16 2 C -0.08 -0.46 6.06 -27.88 -0.17 -0.63 16 3 C -0.06 -0.49 5.13 -104.65 -0.54 -1.02 16 4 C -0.13 -1.05 9.70 -39.55 -0.38 -1.43 16 5 C -0.10 -0.86 10.04 -39.61 -0.40 -1.25 16 6 C -0.13 -1.33 8.66 -39.39 -0.34 -1.67 16 7 C 0.15 1.44 6.28 -83.69 -0.53 0.92 16 8 N -0.67 -5.45 5.34 -9.86 -0.05 -5.50 16 9 C 0.52 5.48 7.64 -10.99 -0.08 5.39 16 10 O -0.51 -7.14 13.43 5.55 0.07 -7.06 16 11 C 0.10 0.97 6.61 -5.19 -0.03 0.94 16 12 N -1.12 -14.51 5.82 -11.66 -0.07 -14.58 16 13 S 2.60 44.18 5.46 -107.50 -0.59 43.60 16 14 O -0.96 -19.73 18.08 -57.54 -1.04 -20.77 16 15 O -0.97 -18.87 17.50 -57.54 -1.01 -19.88 16 16 C -0.59 -10.46 6.01 37.16 0.22 -10.24 16 17 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 18 C -0.52 -14.01 9.11 -34.44 -0.31 -14.32 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 22 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 26 C -0.14 -1.13 9.62 -39.39 -0.38 -1.51 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 31 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 32 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.13 1.60 6.43 -52.49 -0.34 1.27 16 35 H 0.41 1.88 8.82 -40.82 -0.36 1.52 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.12 1.00 7.69 -51.93 -0.40 0.60 16 38 H 0.42 5.50 7.67 -34.47 -0.26 5.24 16 39 H 0.12 1.77 8.14 -51.93 -0.42 1.35 16 40 H 0.12 1.98 8.14 -51.92 -0.42 1.55 16 41 H 0.03 0.91 8.14 -51.92 -0.42 0.48 16 42 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 387.08 15.07 5.83 5.83 Total: -1.00 -37.17 387.08 -10.33 -47.50 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.39 Total: 3.50 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -2.81 Total: -23.12 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.62 Total: -45.36 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -1.97 Total: -47.72 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 44.18 SS G_CDS: -0.59 Total: 43.60 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.17 -10.33 -47.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111336437.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.967 kcal (2) G-P(sol) polarization free energy of solvation -37.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds