Wall clock time and date at job start Sat Apr 11 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46706 * 2 1 4 4 C 1.38304 * 119.96454 * 270.01767 * 3 2 1 5 5 C 1.38261 * 120.14022 * 180.02562 * 4 3 2 6 6 C 1.38126 * 120.07108 * 359.67354 * 5 4 3 7 7 C 1.38856 * 119.92905 * 0.60112 * 6 5 4 8 8 N 1.39923 * 120.07131 * 179.69521 * 7 6 5 9 9 C 1.34779 * 120.00301 * 326.55527 * 8 7 6 10 10 O 1.21290 * 119.99862 * 354.72439 * 9 8 7 11 11 C 1.50697 * 120.00295 * 174.72673 * 9 8 7 12 12 N 1.46502 * 109.47333 * 180.02562 * 11 9 8 13 13 S 1.65600 * 120.00203 * 165.00237 * 12 11 9 14 14 O 1.42100 * 104.27611 * 181.06877 * 13 12 11 15 15 O 1.42108 * 104.27198 * 308.92632 * 13 12 11 16 16 C 1.81397 * 104.44967 * 64.99403 * 13 12 11 17 17 C 1.53004 * 109.47109 * 180.02562 * 16 13 12 18 18 C 1.50700 * 109.47302 * 180.02562 * 17 16 13 19 19 H 1.08002 * 119.99637 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00036 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00048 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00160 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46996 * 60.00034 * 22 20 18 24 24 H 1.48500 * 109.47286 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46811 * 300.00223 * 22 20 18 26 26 C 1.38091 * 119.96275 * 90.00084 * 3 2 1 27 27 H 1.09004 * 109.47139 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47338 * 300.00288 * 1 2 3 29 29 H 1.09000 * 109.47013 * 60.00234 * 1 2 3 30 30 H 1.08999 * 109.47338 * 239.99712 * 2 1 3 31 31 H 1.09000 * 109.47013 * 119.99766 * 2 1 3 32 32 H 1.08000 * 119.92888 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.96307 * 179.97438 * 5 4 3 34 34 H 1.07999 * 120.03762 * 180.32122 * 6 5 4 35 35 H 0.97002 * 120.00040 * 146.54739 * 8 7 6 36 36 H 1.09000 * 109.47076 * 59.99496 * 11 9 8 37 37 H 1.08999 * 109.46876 * 299.99884 * 11 9 8 38 38 H 0.97001 * 119.99800 * 344.99522 * 12 11 9 39 39 H 1.08996 * 109.47363 * 300.00481 * 16 13 12 40 40 H 1.09002 * 109.46799 * 60.00337 * 16 13 12 41 41 H 1.09008 * 109.46886 * 300.00277 * 17 16 13 42 42 H 1.08993 * 109.47115 * 59.99799 * 17 16 13 43 43 H 0.97002 * 119.99924 * 179.97438 * 21 20 18 44 44 H 1.07992 * 120.03670 * 0.03950 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0723 -1.1982 5 6 2.7234 3.3756 -1.2024 6 6 2.9497 4.0336 -0.0092 7 6 2.7254 3.3805 1.1955 8 7 2.9597 4.0421 2.4059 9 6 3.9563 4.9448 2.4987 10 8 4.7099 5.1144 1.5636 11 6 4.1342 5.7434 3.7642 12 7 5.2766 6.6483 3.6141 13 16 5.4883 7.8984 4.6793 14 8 6.6571 8.5600 4.2153 15 8 4.2306 8.5596 4.6979 16 6 5.8049 7.0880 6.2710 17 6 6.0188 8.1508 7.3508 18 6 6.2825 7.4776 8.6730 19 1 6.2957 6.3995 8.7369 20 6 6.5069 8.2379 9.8010 21 7 6.4913 9.5506 9.7231 22 14 6.8330 7.4035 11.4402 23 1 8.0476 6.5561 11.3313 24 1 7.0407 8.4349 12.4881 25 1 5.6692 6.5560 11.8043 26 6 2.2621 2.0711 1.1964 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0817 1.5615 -2.1325 33 1 2.9023 3.8815 -2.1397 34 1 3.3051 5.0535 -0.0132 35 1 2.4049 3.8512 3.1784 36 1 4.3139 5.0661 4.5990 37 1 3.2329 6.3256 3.9561 38 1 5.9090 6.5151 2.8907 39 1 4.9508 6.4659 6.5383 40 1 6.6965 6.4661 6.1911 41 1 6.8729 8.7733 7.0836 42 1 5.1271 8.7723 7.4305 43 1 6.6488 10.0855 10.5168 44 1 2.0828 1.5618 2.1316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111336437.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:38 Heat of formation + Delta-G solvation = -125.181129 kcal Electronic energy + Delta-G solvation = -26115.241068 eV Core-core repulsion = 22157.937230 eV Total energy + Delta-G solvation = -3957.303838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.67865 -39.83658 -38.16649 -37.02248 -36.41155 -35.85708 -35.69961 -34.52061 -33.08939 -31.22071 -30.13576 -27.96771 -27.55621 -24.93580 -23.57004 -23.48862 -22.74714 -21.02659 -20.35999 -19.37740 -18.91424 -18.27170 -17.52904 -17.45472 -17.13330 -16.97753 -16.70297 -16.50021 -16.11025 -15.87861 -15.23689 -15.06036 -14.64006 -14.58556 -14.46516 -14.35545 -14.18596 -13.85468 -13.68299 -13.32367 -13.19995 -13.13163 -13.08447 -12.87416 -12.76735 -12.72515 -12.48145 -12.18295 -12.14715 -11.95348 -11.71197 -11.69865 -11.43414 -11.21313 -11.03877 -10.60594 -10.47902 -9.70217 -9.10760 -8.22711 -6.36288 -0.71334 0.26932 0.43187 1.43632 1.43933 1.46616 1.54594 1.65657 2.06003 2.40646 2.83323 2.84406 3.11063 3.28467 3.43000 3.82394 3.95834 4.02534 4.16618 4.21891 4.24204 4.30948 4.34189 4.40398 4.50022 4.57568 4.63286 4.65264 4.73689 4.81960 5.10548 5.12486 5.15927 5.32165 5.33674 5.34940 5.35596 5.45006 5.57083 5.70923 5.71953 5.94865 6.07969 6.09528 6.33313 6.77838 6.98196 7.33786 8.89081 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.002033 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.548199 B =13770.296836 C =14983.231527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.067 4.067 4 C -0.138 4.138 5 C -0.107 4.107 6 C -0.152 4.152 7 C 0.135 3.865 8 N -0.658 5.658 9 C 0.516 3.484 10 O -0.550 6.550 11 C 0.088 3.912 12 N -1.108 6.108 13 S 2.626 3.374 14 O -1.000 7.000 15 O -0.992 6.992 16 C -0.583 4.583 17 C 0.017 3.983 18 C -0.536 4.536 19 H 0.079 0.921 20 C -0.006 4.006 21 N -0.935 5.935 22 Si 0.973 3.027 23 H -0.265 1.265 24 H -0.288 1.288 25 H -0.261 1.261 26 C -0.143 4.143 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.112 0.888 35 H 0.432 0.568 36 H 0.144 0.856 37 H 0.129 0.871 38 H 0.424 0.576 39 H 0.156 0.844 40 H 0.144 0.856 41 H 0.004 0.996 42 H 0.011 0.989 43 H 0.266 0.734 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.206 -22.506 -18.430 31.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.068 4.068 4 C -0.156 4.156 5 C -0.126 4.126 6 C -0.172 4.172 7 C 0.041 3.959 8 N -0.305 5.305 9 C 0.303 3.697 10 O -0.427 6.427 11 C -0.041 4.041 12 N -0.870 5.870 13 S 2.723 3.277 14 O -0.990 6.990 15 O -0.982 6.982 16 C -0.716 4.716 17 C -0.022 4.022 18 C -0.575 4.575 19 H 0.098 0.902 20 C -0.204 4.204 21 N -0.574 5.574 22 Si 0.797 3.203 23 H -0.190 1.190 24 H -0.214 1.214 25 H -0.185 1.185 26 C -0.163 4.163 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.159 0.841 33 H 0.152 0.848 34 H 0.130 0.870 35 H 0.272 0.728 36 H 0.162 0.838 37 H 0.147 0.853 38 H 0.262 0.738 39 H 0.174 0.826 40 H 0.163 0.837 41 H 0.022 0.978 42 H 0.029 0.971 43 H 0.075 0.925 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.840 -21.223 -19.067 31.286 hybrid contribution 0.539 -0.109 1.124 1.251 sum -12.301 -21.332 -17.943 30.468 Atomic orbital electron populations 1.21740 0.94080 1.02432 1.02023 1.20594 0.96561 0.90967 1.03880 1.20019 0.97358 0.97130 0.92279 1.21293 1.00825 0.94774 0.98713 1.21223 0.98214 0.95418 0.97696 1.21176 1.03090 1.00544 0.92426 1.17869 1.00194 0.92224 0.85585 1.43318 1.33595 1.40463 1.13136 1.20933 0.79567 0.79520 0.89714 1.90718 1.44796 1.66397 1.40746 1.21468 0.91642 0.94383 0.96615 1.55245 1.36743 1.48949 1.46110 1.04405 0.72869 0.73943 0.76485 1.93513 1.51885 1.73225 1.80416 1.93504 1.44459 1.72967 1.87288 1.30316 1.13223 1.11827 1.16189 1.18852 0.96465 0.93071 0.93803 1.21502 1.48976 0.94115 0.92918 0.90249 1.26116 0.94939 0.95491 1.03861 1.70101 1.50204 1.06067 1.31045 0.85378 0.79369 0.77976 0.77598 1.19010 1.21396 1.18504 1.21001 1.03730 0.91809 0.99733 0.91238 0.92741 0.92866 0.90055 0.90099 0.84124 0.84751 0.87038 0.72772 0.83849 0.85319 0.73801 0.82643 0.83741 0.97790 0.97061 0.92535 0.83395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 71.98 0.71 -0.33 16 2 C -0.08 -0.67 6.06 29.85 0.18 -0.49 16 3 C -0.07 -0.87 5.13 -19.88 -0.10 -0.98 16 4 C -0.14 -1.95 9.70 22.29 0.22 -1.73 16 5 C -0.11 -1.88 10.04 22.25 0.22 -1.66 16 6 C -0.15 -3.28 8.66 22.39 0.19 -3.09 16 7 C 0.14 2.44 6.28 38.15 0.24 2.68 16 8 N -0.66 -9.53 5.34 -303.50 -1.62 -11.15 16 9 C 0.52 10.31 7.64 87.66 0.67 10.98 16 10 O -0.55 -15.51 13.43 -3.06 -0.04 -15.55 16 11 C 0.09 1.50 6.61 85.63 0.57 2.06 16 12 N -1.11 -27.29 5.82 -190.79 -1.11 -28.40 16 13 S 2.63 88.23 5.46 -56.49 -0.31 87.92 16 14 O -1.00 -41.88 18.08 -127.65 -2.31 -44.19 16 15 O -0.99 -38.61 17.50 -127.65 -2.23 -40.85 16 16 C -0.58 -19.69 6.01 71.98 0.43 -19.26 16 17 C 0.02 0.85 4.98 29.85 0.15 1.00 16 18 C -0.54 -28.40 9.11 25.60 0.23 -28.16 16 19 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 20 C -0.01 -0.32 5.46 84.65 0.46 0.15 16 21 N -0.93 -55.88 13.29 21.45 0.28 -55.59 16 22 Si 0.97 42.08 29.54 68.60 2.03 44.11 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 26 C -0.14 -1.96 9.62 22.39 0.22 -1.74 16 27 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 28 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.08 0.54 8.09 -2.39 -0.02 0.52 16 31 H 0.08 0.54 8.08 -2.39 -0.02 0.52 16 32 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 33 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.11 2.86 6.43 -2.91 -0.02 2.85 16 35 H 0.43 2.75 8.82 -92.71 -0.82 1.94 16 36 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.13 1.90 7.69 -2.39 -0.02 1.88 16 38 H 0.42 10.80 7.67 -96.74 -0.74 10.06 16 39 H 0.16 4.07 8.14 -2.39 -0.02 4.05 16 40 H 0.14 4.28 8.14 -2.39 -0.02 4.26 16 41 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 42 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 44 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -83.01 387.08 -1.45 -84.46 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -0.53 Total: 19.80 kcal Atomic # 6 Polarization: -44.96 SS G_CDS: 4.39 Total: -40.57 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -2.45 Total: -95.14 kcal Atomic # 8 Polarization: -96.00 SS G_CDS: -4.58 Total: -100.59 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 88.23 SS G_CDS: -0.31 Total: 87.92 kcal Total: -83.01 -1.45 -84.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111336437.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.723 kcal (2) G-P(sol) polarization free energy of solvation -83.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds