Wall clock time and date at job start Sat Apr 11 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 116.99765 * 2 1 4 4 O 1.20823 * 120.00509 * 359.97438 * 3 2 1 5 5 C 1.50710 * 119.99684 * 179.97438 * 3 2 1 6 6 N 1.46495 * 109.46941 * 179.97438 * 5 3 2 7 7 C 1.36895 * 120.00424 * 269.91073 * 6 5 3 8 8 H 1.08001 * 119.99434 * 130.68732 * 7 6 5 9 9 C 1.39005 * 119.99748 * 310.69349 * 7 6 5 10 10 N 1.31402 * 119.99752 * 170.46726 * 9 7 6 11 11 Si 1.86799 * 120.00027 * 350.46033 * 9 7 6 12 12 H 1.48503 * 109.47051 * 91.12514 * 11 9 7 13 13 H 1.48500 * 109.46986 * 211.12319 * 11 9 7 14 14 H 1.48500 * 109.47474 * 331.12510 * 11 9 7 15 15 C 1.34777 * 119.99742 * 89.91131 * 6 5 3 16 16 O 1.21726 * 120.00021 * 3.92378 * 15 6 5 17 17 C 1.46561 * 120.00219 * 183.91792 * 15 6 5 18 18 S 1.76217 * 126.17975 * 353.80434 * 17 15 6 19 19 C 1.70916 * 90.37828 * 180.02562 * 18 17 15 20 20 C 1.50702 * 124.70298 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.46997 * 269.72315 * 20 19 18 22 22 C 1.52996 * 109.47408 * 294.99814 * 21 20 19 23 23 C 1.53000 * 109.46776 * 175.00079 * 21 20 19 24 24 N 1.29383 * 110.59199 * 359.66519 * 19 18 17 25 25 C 1.30937 * 117.46774 * 0.26227 * 24 19 18 26 26 C 1.50701 * 123.03842 * 179.97438 * 25 24 19 27 27 H 1.09008 * 109.47342 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47183 * 300.00332 * 1 2 3 29 29 H 1.08991 * 109.47504 * 60.00102 * 1 2 3 30 30 H 1.09005 * 109.46724 * 60.00124 * 5 3 2 31 31 H 1.08997 * 109.47334 * 300.00010 * 5 3 2 32 32 H 0.96994 * 119.99793 * 179.97438 * 10 9 7 33 33 H 1.09002 * 109.46514 * 149.72699 * 20 19 18 34 34 H 1.08996 * 109.47103 * 29.73143 * 20 19 18 35 35 H 1.08996 * 109.47281 * 55.00593 * 21 20 19 36 36 H 1.09007 * 109.46598 * 60.00610 * 22 21 20 37 37 H 1.09006 * 109.47154 * 179.97438 * 22 21 20 38 38 H 1.08996 * 109.47536 * 300.00622 * 22 21 20 39 39 H 1.08994 * 109.47192 * 180.02562 * 23 21 20 40 40 H 1.09001 * 109.47431 * 300.00562 * 23 21 20 41 41 H 1.08998 * 109.47305 * 60.00298 * 23 21 20 42 42 H 1.09001 * 109.47196 * 90.02769 * 26 25 24 43 43 H 1.08996 * 109.47415 * 210.02556 * 26 25 24 44 44 H 1.09004 * 109.47430 * 330.02889 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.1780 3.3348 -1.1860 8 1 3.7244 4.3011 -1.3505 9 6 4.9610 2.7564 -2.1782 10 7 4.9992 3.2889 -3.3789 11 14 5.9591 1.2222 -1.8047 12 1 5.1509 0.0170 -2.1199 13 1 7.1929 1.2210 -2.6311 14 1 6.3270 1.2090 -0.3660 15 6 4.1705 3.3271 1.1667 16 8 4.0657 2.7262 2.2201 17 6 4.5021 4.7547 1.1674 18 16 4.8429 5.7442 -0.2503 19 6 5.0832 7.1110 0.7473 20 6 5.4429 8.4861 0.2465 21 6 6.9654 8.6275 0.1934 22 6 7.5345 8.5516 1.6115 23 6 7.3309 9.9755 -0.4313 24 7 4.9072 6.8028 1.9915 25 6 4.5963 5.5613 2.2681 26 6 4.3640 5.0657 3.6722 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.9563 0.7805 -0.8892 31 1 3.9557 0.7809 0.8908 32 1 5.5459 2.8855 -4.0711 33 1 5.0315 9.2373 0.9208 34 1 5.0295 8.6288 -0.7519 35 1 7.3842 7.8221 -0.4098 36 1 7.2741 7.5911 2.0565 37 1 8.6193 8.6518 1.5736 38 1 7.1156 9.3570 2.2148 39 1 8.4155 10.0761 -0.4696 40 1 6.9254 10.0297 -1.4416 41 1 6.9121 10.7810 0.1719 42 1 3.3101 5.1771 3.9270 43 1 4.6445 4.0145 3.7375 44 1 4.9693 5.6472 4.3676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120571690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:41 Heat of formation + Delta-G solvation = -80.935020 kcal Electronic energy + Delta-G solvation = -28237.545926 eV Core-core repulsion = 24282.160743 eV Total energy + Delta-G solvation = -3955.385183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.15266 -39.36971 -38.44529 -36.22551 -35.92492 -35.04231 -32.39161 -31.34573 -29.47474 -27.94515 -27.55760 -27.01314 -26.34513 -24.95869 -22.46364 -21.48409 -20.18999 -19.94467 -18.91304 -17.58738 -17.33508 -16.99111 -16.31922 -15.93263 -15.63524 -15.14863 -14.82359 -14.78857 -14.27586 -14.05355 -13.93066 -13.38291 -13.30962 -13.17485 -12.89137 -12.61587 -12.49853 -12.26674 -12.10408 -11.97604 -11.95743 -11.73947 -11.69326 -11.59033 -11.26958 -10.89371 -10.80899 -10.72119 -10.56120 -10.46057 -10.43292 -10.28959 -10.01424 -9.61584 -9.00133 -8.64571 -8.49935 -8.14800 -7.72975 -6.79515 -4.61735 1.10624 2.24671 2.67999 2.74342 2.85202 2.92572 3.03208 3.06687 3.29670 3.80896 4.02909 4.13108 4.61218 4.64848 5.00979 5.05807 5.17124 5.28413 5.34763 5.37605 5.53173 5.64027 5.68878 5.70254 5.71270 5.76893 5.77983 5.82028 5.95724 5.97553 6.02041 6.07854 6.21011 6.22372 6.42828 6.48315 6.48991 6.54898 6.74569 6.96899 7.04314 7.68895 7.82030 8.27658 8.47938 8.55381 8.89603 9.26233 10.24658 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013350 B = 0.004288 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.837148 B = 6528.966229 C = 7591.738337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.449 3.551 4 O -0.488 6.488 5 C 0.111 3.889 6 N -0.452 5.452 7 C -0.347 4.347 8 H 0.116 0.884 9 C 0.081 3.919 10 N -0.835 5.835 11 Si 0.870 3.130 12 H -0.263 1.263 13 H -0.276 1.276 14 H -0.252 1.252 15 C 0.579 3.421 16 O -0.574 6.574 17 C -0.278 4.278 18 S 0.300 5.700 19 C -0.044 4.044 20 C -0.034 4.034 21 C -0.091 4.091 22 C -0.143 4.143 23 C -0.144 4.144 24 N -0.488 5.488 25 C 0.112 3.888 26 C -0.079 4.079 27 H 0.095 0.905 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.284 0.716 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.117 2.449 2.686 3.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.289 3.711 4 O -0.373 6.373 5 C -0.014 4.014 6 N -0.173 5.173 7 C -0.480 4.480 8 H 0.133 0.867 9 C -0.132 4.132 10 N -0.466 5.466 11 Si 0.695 3.305 12 H -0.189 1.189 13 H -0.201 1.201 14 H -0.175 1.175 15 C 0.370 3.630 16 O -0.458 6.458 17 C -0.403 4.403 18 S 0.566 5.434 19 C -0.315 4.315 20 C -0.074 4.074 21 C -0.111 4.111 22 C -0.200 4.200 23 C -0.202 4.202 24 N -0.204 5.204 25 C -0.029 4.029 26 C -0.138 4.138 27 H 0.114 0.886 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.125 0.875 31 H 0.135 0.865 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.114 0.886 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.036 2.842 2.230 3.759 hybrid contribution -0.057 -0.997 0.630 1.181 sum 0.979 1.845 2.860 3.542 Atomic orbital electron populations 1.23149 0.77374 1.02921 1.02309 1.86514 1.22775 1.34338 1.84883 1.24653 0.92758 0.81274 0.72387 1.90632 1.66579 1.36254 1.43838 1.21328 0.86943 0.87889 1.05241 1.43098 1.59394 1.08669 1.06166 1.18976 1.32538 1.04827 0.91685 0.86727 1.25535 0.94864 0.98179 0.94618 1.69639 1.35807 1.39641 1.01516 0.86952 0.80591 0.82209 0.80731 1.18936 1.20132 1.17511 1.16996 0.77849 0.84778 0.83422 1.90630 1.56343 1.67657 1.31203 1.25490 1.18239 0.99482 0.97075 1.85577 1.57346 0.94970 1.05523 1.28250 1.03042 1.04620 0.95620 1.20211 0.95951 0.90322 1.00902 1.21107 0.94242 0.98187 0.97589 1.21803 0.99496 1.02806 0.95913 1.21824 1.01211 0.96594 1.00567 1.66006 1.16555 1.18043 1.19784 1.20647 0.98490 0.87277 0.96460 1.20467 1.01508 1.02700 0.89144 0.88636 0.92290 0.92157 0.87549 0.86545 0.90539 0.90059 0.90227 0.90900 0.91929 0.93411 0.92818 0.92662 0.92541 0.92705 0.91559 0.88588 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.57 16 2 O -0.37 -6.49 10.56 -39.24 -0.41 -6.90 16 3 C 0.45 9.44 8.02 36.01 0.29 9.72 16 4 O -0.49 -11.65 16.18 -18.75 -0.30 -11.95 16 5 C 0.11 2.34 4.73 -5.19 -0.02 2.32 16 6 N -0.45 -10.68 1.50 -117.62 -0.18 -10.86 16 7 C -0.35 -8.49 7.43 -15.01 -0.11 -8.60 16 8 H 0.12 2.98 5.52 -32.06 -0.18 2.80 16 9 C 0.08 1.93 5.43 -17.45 -0.09 1.83 16 10 N -0.83 -20.50 13.96 55.50 0.77 -19.73 16 11 Si 0.87 18.12 24.91 -169.99 -4.23 13.89 16 12 H -0.26 -5.14 6.73 56.52 0.38 -4.76 16 13 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 14 H -0.25 -5.31 7.11 56.52 0.40 -4.91 16 15 C 0.58 13.87 7.59 -12.90 -0.10 13.77 16 16 O -0.57 -13.98 13.87 5.17 0.07 -13.91 16 17 C -0.28 -6.24 6.35 -36.76 -0.23 -6.48 16 18 S 0.30 6.10 18.53 -107.50 -1.99 4.11 16 19 C -0.04 -0.79 5.87 -13.31 -0.08 -0.87 16 20 C -0.03 -0.48 5.27 -27.88 -0.15 -0.62 16 21 C -0.09 -1.17 2.91 -90.62 -0.26 -1.43 16 22 C -0.14 -1.89 8.99 37.16 0.33 -1.55 16 23 C -0.14 -1.48 9.19 37.16 0.34 -1.13 16 24 N -0.49 -9.58 9.72 -7.47 -0.07 -9.65 16 25 C 0.11 2.34 6.83 -83.50 -0.57 1.77 16 26 C -0.08 -1.46 9.80 36.01 0.35 -1.11 16 27 H 0.10 0.94 8.14 -51.92 -0.42 0.51 16 28 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 29 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.11 2.16 3.83 -51.93 -0.20 1.96 16 31 H 0.12 2.27 7.37 -51.93 -0.38 1.89 16 32 H 0.28 6.46 8.31 -40.82 -0.34 6.12 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.98 6.80 -51.93 -0.35 0.63 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.10 1.88 5.93 -51.93 -0.31 1.57 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 372.73 15.07 5.62 5.62 Total: -1.00 -28.97 372.73 -6.04 -35.01 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.07 Total: 5.20 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 0.76 Total: 9.18 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.53 Total: -40.23 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.65 Total: -32.77 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -4.23 Total: 13.89 kcal Atomic # 16 Polarization: 6.10 SS G_CDS: -1.99 Total: 4.11 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.97 -6.04 -35.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120571690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.924 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds