Wall clock time and date at job start Sat Apr 11 2020 05:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 116.99765 * 2 1 4 4 O 1.20823 * 120.00509 * 359.97438 * 3 2 1 5 5 C 1.50710 * 119.99684 * 179.97438 * 3 2 1 6 6 N 1.46495 * 109.46941 * 179.97438 * 5 3 2 7 7 C 1.36895 * 120.00424 * 269.91073 * 6 5 3 8 8 H 1.08001 * 119.99434 * 130.68732 * 7 6 5 9 9 C 1.39005 * 119.99748 * 310.69349 * 7 6 5 10 10 N 1.31402 * 119.99752 * 170.46726 * 9 7 6 11 11 Si 1.86799 * 120.00027 * 350.46033 * 9 7 6 12 12 H 1.48503 * 109.47051 * 91.12514 * 11 9 7 13 13 H 1.48500 * 109.46986 * 211.12319 * 11 9 7 14 14 H 1.48500 * 109.47474 * 331.12510 * 11 9 7 15 15 C 1.34777 * 119.99742 * 89.91131 * 6 5 3 16 16 O 1.21726 * 120.00021 * 3.92378 * 15 6 5 17 17 C 1.46561 * 120.00219 * 183.91792 * 15 6 5 18 18 S 1.76217 * 126.17975 * 353.80434 * 17 15 6 19 19 C 1.70916 * 90.37828 * 180.02562 * 18 17 15 20 20 C 1.50702 * 124.70298 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.46997 * 269.72315 * 20 19 18 22 22 C 1.52996 * 109.47408 * 294.99814 * 21 20 19 23 23 C 1.53000 * 109.46776 * 175.00079 * 21 20 19 24 24 N 1.29383 * 110.59199 * 359.66519 * 19 18 17 25 25 C 1.30937 * 117.46774 * 0.26227 * 24 19 18 26 26 C 1.50701 * 123.03842 * 179.97438 * 25 24 19 27 27 H 1.09008 * 109.47342 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47183 * 300.00332 * 1 2 3 29 29 H 1.08991 * 109.47504 * 60.00102 * 1 2 3 30 30 H 1.09005 * 109.46724 * 60.00124 * 5 3 2 31 31 H 1.08997 * 109.47334 * 300.00010 * 5 3 2 32 32 H 0.96994 * 119.99793 * 179.97438 * 10 9 7 33 33 H 1.09002 * 109.46514 * 149.72699 * 20 19 18 34 34 H 1.08996 * 109.47103 * 29.73143 * 20 19 18 35 35 H 1.08996 * 109.47281 * 55.00593 * 21 20 19 36 36 H 1.09007 * 109.46598 * 60.00610 * 22 21 20 37 37 H 1.09006 * 109.47154 * 179.97438 * 22 21 20 38 38 H 1.08996 * 109.47536 * 300.00622 * 22 21 20 39 39 H 1.08994 * 109.47192 * 180.02562 * 23 21 20 40 40 H 1.09001 * 109.47431 * 300.00562 * 23 21 20 41 41 H 1.08998 * 109.47305 * 60.00298 * 23 21 20 42 42 H 1.09001 * 109.47196 * 90.02769 * 26 25 24 43 43 H 1.08996 * 109.47415 * 210.02556 * 26 25 24 44 44 H 1.09004 * 109.47430 * 330.02889 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.1780 3.3348 -1.1860 8 1 3.7244 4.3011 -1.3505 9 6 4.9610 2.7564 -2.1782 10 7 4.9992 3.2889 -3.3789 11 14 5.9591 1.2222 -1.8047 12 1 5.1509 0.0170 -2.1199 13 1 7.1929 1.2210 -2.6311 14 1 6.3270 1.2090 -0.3660 15 6 4.1705 3.3271 1.1667 16 8 4.0657 2.7262 2.2201 17 6 4.5021 4.7547 1.1674 18 16 4.8429 5.7442 -0.2503 19 6 5.0832 7.1110 0.7473 20 6 5.4429 8.4861 0.2465 21 6 6.9654 8.6275 0.1934 22 6 7.5345 8.5516 1.6115 23 6 7.3309 9.9755 -0.4313 24 7 4.9072 6.8028 1.9915 25 6 4.5963 5.5613 2.2681 26 6 4.3640 5.0657 3.6722 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.9563 0.7805 -0.8892 31 1 3.9557 0.7809 0.8908 32 1 5.5459 2.8855 -4.0711 33 1 5.0315 9.2373 0.9208 34 1 5.0295 8.6288 -0.7519 35 1 7.3842 7.8221 -0.4098 36 1 7.2741 7.5911 2.0565 37 1 8.6193 8.6518 1.5736 38 1 7.1156 9.3570 2.2148 39 1 8.4155 10.0761 -0.4696 40 1 6.9254 10.0297 -1.4416 41 1 6.9121 10.7810 0.1719 42 1 3.3101 5.1771 3.9270 43 1 4.6445 4.0145 3.7375 44 1 4.9693 5.6472 4.3676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120571690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:40 Heat of formation + Delta-G solvation = -97.306937 kcal Electronic energy + Delta-G solvation = -28238.255866 eV Core-core repulsion = 24282.160743 eV Total energy + Delta-G solvation = -3956.095122 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.79745 -40.96969 -40.08424 -37.65441 -37.23180 -36.80775 -34.19992 -32.82956 -31.06821 -29.24636 -28.97635 -27.96349 -27.82776 -26.70731 -23.86659 -23.09261 -21.85806 -21.03338 -20.64757 -19.24615 -18.94953 -18.59182 -17.90639 -17.46669 -17.24920 -16.75501 -16.32955 -16.27809 -15.63344 -15.55201 -15.30531 -14.83842 -14.75243 -14.64904 -14.34871 -14.24681 -14.07057 -13.60897 -13.50696 -13.31257 -13.25710 -13.04636 -13.00608 -12.93083 -12.64990 -12.48312 -12.08914 -12.01752 -11.91609 -11.84063 -11.76154 -11.71048 -11.58305 -11.32471 -10.77581 -10.29428 -10.12887 -9.87865 -9.35734 -8.59535 -6.47205 -0.50235 0.64821 1.06934 1.10091 1.22113 1.31356 1.38272 1.44634 1.72587 2.09824 2.29424 2.44316 2.84632 3.21745 3.81634 3.88929 3.93748 3.99601 4.04187 4.05505 4.21554 4.28369 4.29516 4.32160 4.42317 4.63539 4.69046 4.72597 4.75023 4.83795 4.88581 4.97463 4.98883 5.05471 5.12728 5.19562 5.27299 5.28620 5.46919 5.47580 5.52493 5.88922 5.95759 6.68246 6.72615 6.88305 7.08013 7.45953 8.47213 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013350 B = 0.004288 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.837148 B = 6528.966229 C = 7591.738337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.453 3.547 4 O -0.525 6.525 5 C 0.103 3.897 6 N -0.459 5.459 7 C -0.356 4.356 8 H 0.093 0.907 9 C 0.052 3.948 10 N -0.865 5.865 11 Si 0.909 3.091 12 H -0.239 1.239 13 H -0.270 1.270 14 H -0.259 1.259 15 C 0.569 3.431 16 O -0.589 6.589 17 C -0.319 4.319 18 S 0.279 5.721 19 C -0.016 4.016 20 C -0.037 4.037 21 C -0.089 4.089 22 C -0.140 4.140 23 C -0.138 4.138 24 N -0.496 5.496 25 C 0.114 3.886 26 C -0.075 4.075 27 H 0.142 0.858 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.116 0.884 31 H 0.131 0.869 32 H 0.290 0.710 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.032 0.968 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.601 2.774 2.928 4.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.295 3.705 4 O -0.413 6.413 5 C -0.021 4.021 6 N -0.180 5.180 7 C -0.488 4.488 8 H 0.110 0.890 9 C -0.158 4.158 10 N -0.498 5.498 11 Si 0.732 3.268 12 H -0.164 1.164 13 H -0.195 1.195 14 H -0.183 1.183 15 C 0.361 3.639 16 O -0.475 6.475 17 C -0.443 4.443 18 S 0.544 5.456 19 C -0.288 4.288 20 C -0.077 4.077 21 C -0.109 4.109 22 C -0.198 4.198 23 C -0.196 4.196 24 N -0.212 5.212 25 C -0.027 4.027 26 C -0.133 4.133 27 H 0.159 0.841 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.133 0.867 31 H 0.148 0.852 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.500 3.111 2.448 4.234 hybrid contribution -0.269 -0.989 0.615 1.195 sum 1.231 2.122 3.063 3.925 Atomic orbital electron populations 1.23563 0.74811 1.05913 1.02196 1.86486 1.25146 1.32174 1.84028 1.24549 0.92760 0.81656 0.71535 1.90615 1.67306 1.37628 1.45771 1.21470 0.87514 0.86857 1.06284 1.43143 1.59572 1.09492 1.05746 1.18852 1.32990 1.04851 0.92119 0.88984 1.25991 0.95222 1.00385 0.94194 1.69688 1.36778 1.41076 1.02234 0.86331 0.79917 0.80439 0.80109 1.16356 1.19515 1.18257 1.17281 0.77687 0.85503 0.83438 1.90592 1.57236 1.68225 1.31445 1.25528 1.20980 0.99509 0.98271 1.85520 1.58255 0.95980 1.05868 1.28832 0.99934 1.05419 0.94587 1.20485 0.97363 0.87935 1.01907 1.21112 0.92717 0.99626 0.97492 1.21778 1.00629 1.01379 0.95967 1.21776 1.02067 0.94883 1.00854 1.66131 1.17514 1.17372 1.20136 1.21105 0.96949 0.87492 0.97144 1.20463 1.02298 1.02169 0.88412 0.84052 0.92397 0.92396 0.86656 0.85173 0.89990 0.88622 0.88618 0.92139 0.94879 0.91934 0.91971 0.91604 0.91837 0.91544 0.90876 0.89865 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.92 16 2 O -0.36 -12.30 10.56 -51.37 -0.54 -12.85 16 3 C 0.45 19.05 8.02 71.24 0.57 19.62 16 4 O -0.53 -25.56 16.18 21.97 0.36 -25.20 16 5 C 0.10 4.35 4.73 85.64 0.40 4.76 16 6 N -0.46 -22.11 1.50 -644.24 -0.97 -23.08 16 7 C -0.36 -17.89 7.43 84.09 0.62 -17.27 16 8 H 0.09 5.01 5.52 -15.90 -0.09 4.93 16 9 C 0.05 2.52 5.43 84.94 0.46 2.98 16 10 N -0.87 -43.11 13.96 21.67 0.30 -42.81 16 11 Si 0.91 36.69 24.91 68.60 1.71 38.40 16 12 H -0.24 -8.65 6.73 99.48 0.67 -7.98 16 13 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 14 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 15 C 0.57 28.00 7.59 86.41 0.66 28.66 16 16 O -0.59 -29.30 13.87 -4.43 -0.06 -29.37 16 17 C -0.32 -14.67 6.35 24.10 0.15 -14.52 16 18 S 0.28 11.59 18.53 -56.49 -1.05 10.54 16 19 C -0.02 -0.56 5.87 88.47 0.52 -0.04 16 20 C -0.04 -0.97 5.27 29.85 0.16 -0.82 16 21 C -0.09 -2.11 2.91 -10.79 -0.03 -2.15 16 22 C -0.14 -3.45 8.99 71.98 0.65 -2.80 16 23 C -0.14 -2.41 9.19 71.98 0.66 -1.75 16 24 N -0.50 -19.20 9.72 -177.54 -1.73 -20.92 16 25 C 0.11 4.80 6.83 42.35 0.29 5.09 16 26 C -0.07 -2.73 9.80 71.24 0.70 -2.03 16 27 H 0.14 2.29 8.14 -2.38 -0.02 2.27 16 28 H 0.06 1.50 8.13 -2.38 -0.02 1.48 16 29 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 30 H 0.12 4.58 3.83 -2.38 -0.01 4.57 16 31 H 0.13 5.05 7.37 -2.39 -0.02 5.03 16 32 H 0.29 13.26 8.31 -92.71 -0.77 12.49 16 33 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.03 1.00 6.80 -2.38 -0.02 0.98 16 37 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.08 3.28 5.93 -2.39 -0.01 3.27 16 44 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 Total: -1.00 -63.80 372.73 5.95 -57.85 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.92 Total: 25.76 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: 7.01 Total: 21.66 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -2.39 Total: -86.80 kcal Atomic # 8 Polarization: -67.16 SS G_CDS: -0.25 Total: -67.41 kcal Atomic # 14 Polarization: 36.69 SS G_CDS: 1.71 Total: 38.40 kcal Atomic # 16 Polarization: 11.59 SS G_CDS: -1.05 Total: 10.54 kcal Total: -63.80 5.95 -57.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120571690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.455 kcal (2) G-P(sol) polarization free energy of solvation -63.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds