Wall clock time and date at job start Sat Apr 11 2020 05:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32566 * 121.64556 * 2 1 4 4 S 1.77235 * 105.31962 * 180.19809 * 3 2 1 5 5 C 1.72205 * 94.84564 * 359.76407 * 4 3 2 6 6 O 1.21829 * 127.06085 * 180.02562 * 5 4 3 7 7 N 1.34249 * 105.88720 * 0.02562 * 5 4 3 8 8 C 1.46494 * 121.38290 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47640 * 90.02067 * 8 7 5 10 10 C 1.50697 * 109.47542 * 180.02562 * 9 8 7 11 11 O 1.20828 * 119.99576 * 359.97438 * 10 9 8 12 12 O 1.34227 * 120.00204 * 179.97438 * 10 9 8 13 13 C 1.45203 * 117.00080 * 179.97438 * 12 10 9 14 14 C 1.53036 * 109.46305 * 270.03208 * 13 12 10 15 15 C 1.53190 * 109.31506 * 178.59900 * 14 13 12 16 16 N 1.46931 * 108.76178 * 54.65729 * 15 14 13 17 17 C 1.36932 * 120.63085 * 126.40786 * 16 15 14 18 18 H 1.07995 * 120.00062 * 331.82243 * 17 16 15 19 19 C 1.38817 * 119.99724 * 151.82815 * 17 16 15 20 20 N 1.31613 * 120.00197 * 343.06241 * 19 17 16 21 21 Si 1.86803 * 119.99769 * 163.06757 * 19 17 16 22 22 H 1.48500 * 109.47233 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.46819 * 119.99872 * 21 19 17 24 24 H 1.48499 * 109.47248 * 239.99469 * 21 19 17 25 25 C 1.46925 * 118.73576 * 306.38310 * 16 15 14 26 26 C 1.53036 * 109.45814 * 149.97666 * 13 12 10 27 27 H 1.09000 * 109.47243 * 270.24406 * 1 2 3 28 28 H 1.09002 * 109.47408 * 30.23675 * 1 2 3 29 29 H 1.08999 * 109.47405 * 150.24020 * 1 2 3 30 30 H 1.07997 * 127.34192 * 359.94330 * 3 2 1 31 31 H 1.09007 * 109.46845 * 330.01956 * 8 7 5 32 32 H 1.08998 * 109.47403 * 210.02273 * 8 7 5 33 33 H 1.09006 * 109.46586 * 59.99901 * 9 8 7 34 34 H 1.08998 * 109.46891 * 300.00520 * 9 8 7 35 35 H 1.09001 * 109.45601 * 30.00429 * 13 12 10 36 36 H 1.09005 * 109.49810 * 298.56820 * 14 13 12 37 37 H 1.09003 * 109.50218 * 58.65920 * 14 13 12 38 38 H 1.09000 * 109.59868 * 294.86987 * 15 14 13 39 39 H 1.09000 * 109.70606 * 174.50378 * 15 14 13 40 40 H 0.97003 * 119.99949 * 180.02562 * 20 19 17 41 41 H 1.09007 * 109.59256 * 293.82181 * 25 16 15 42 42 H 1.09005 * 109.70514 * 173.46702 * 25 16 15 43 43 H 1.09007 * 109.49915 * 301.34048 * 26 13 12 44 44 H 1.08995 * 109.50127 * 61.40106 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9034 0.6303 -0.0059 5 6 3.5606 -1.0573 -0.0009 6 8 4.3673 -1.9703 -0.0018 7 7 2.2221 -1.1604 0.0042 8 6 1.5576 -2.4660 0.0090 9 6 1.3311 -2.9178 1.4531 10 6 0.6481 -4.2611 1.4580 11 8 0.3705 -4.8014 0.4135 12 8 0.3481 -4.8573 2.6226 13 6 -0.3099 -6.1497 2.5513 14 6 -1.8269 -5.9491 2.5293 15 6 -2.5167 -7.3123 2.4187 16 7 -2.0380 -8.1740 3.5084 17 6 -2.9241 -8.7901 4.3512 18 1 -3.8875 -8.3417 4.5434 19 6 -2.5838 -9.9911 4.9585 20 7 -1.5822 -10.7049 4.4900 21 14 -3.5476 -10.5942 6.4407 22 1 -4.6159 -9.6160 6.7679 23 1 -4.1597 -11.9112 6.1306 24 1 -2.6330 -10.7346 7.6022 25 6 -0.5906 -8.3622 3.6761 26 6 0.0777 -6.9871 3.7722 27 1 -0.3634 0.0044 1.0276 28 1 -0.3634 0.8879 -0.5175 29 1 -0.3634 -0.8921 -0.5101 30 1 1.8152 2.1367 -0.0008 31 1 2.1843 -3.1945 -0.5056 32 1 0.5980 -2.3871 -0.5017 33 1 0.7044 -2.1892 1.9676 34 1 2.2908 -2.9966 1.9639 35 1 0.0014 -6.6660 1.6431 36 1 -2.1419 -5.4551 3.4485 37 1 -2.1000 -5.3328 1.6726 38 1 -2.2740 -7.7682 1.4589 39 1 -3.5963 -7.1857 2.5005 40 1 -1.3447 -11.5443 4.9142 41 1 -0.1906 -8.9037 2.8188 42 1 -0.3967 -8.9272 4.5879 43 1 1.1604 -7.1099 3.8003 44 1 -0.2549 -6.4831 4.6795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121067562.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:47 Heat of formation + Delta-G solvation = -70.851538 kcal Electronic energy + Delta-G solvation = -27107.866714 eV Core-core repulsion = 23152.918784 eV Total energy + Delta-G solvation = -3954.947930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.51202 -40.42098 -37.97767 -37.63110 -35.97120 -33.90813 -32.75630 -31.73640 -30.43526 -29.73017 -28.72869 -25.88015 -24.98983 -23.70777 -22.44388 -22.13841 -20.89605 -20.42426 -19.38426 -18.47706 -18.04470 -17.15497 -16.99742 -16.66381 -16.29342 -15.86176 -15.33813 -14.90950 -14.75384 -14.19459 -14.18773 -14.07263 -13.98164 -13.62543 -13.49653 -13.18454 -12.96188 -12.91528 -12.63752 -12.47724 -11.86843 -11.70975 -11.59306 -11.53437 -11.30711 -11.14232 -10.82269 -10.77582 -10.61477 -10.43962 -10.34979 -10.21267 -10.03296 -9.93854 -9.70300 -9.51917 -8.54383 -8.36115 -6.78103 -5.86228 -3.29231 0.56249 0.96370 1.38639 1.73111 2.17541 2.22294 2.84613 3.33818 3.41800 3.43955 4.02754 4.22488 4.27045 4.43987 4.56534 4.70372 4.83540 4.90887 4.99542 5.04723 5.13676 5.19162 5.20709 5.30961 5.34915 5.46114 5.47728 5.65951 5.68575 5.92617 6.16129 6.27473 6.30289 6.32891 6.44277 6.52257 6.66027 6.76467 6.88169 6.92273 7.23131 7.53132 7.73635 7.79201 8.37041 9.12960 9.75660 10.32120 11.23026 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.030938 B = 0.001979 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.806621 B =14146.404987 C =14503.831712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.103 3.897 3 C -0.239 4.239 4 S 0.001 5.999 5 C 0.479 3.521 6 O -0.467 6.467 7 N -0.533 5.533 8 C 0.112 3.888 9 C -0.132 4.132 10 C 0.466 3.534 11 O -0.510 6.510 12 O -0.354 6.354 13 C 0.098 3.902 14 C -0.145 4.145 15 C 0.149 3.851 16 N -0.593 5.593 17 C -0.255 4.255 18 H 0.068 0.932 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.904 3.096 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.288 1.288 25 C 0.174 3.826 26 C -0.136 4.136 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.192 0.808 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.022 0.978 39 H 0.061 0.939 40 H 0.255 0.745 41 H 0.022 0.978 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.838 25.592 -8.757 27.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.007 4.007 3 C -0.377 4.377 4 S 0.244 5.756 5 C 0.161 3.839 6 O -0.346 6.346 7 N -0.254 5.254 8 C -0.013 4.013 9 C -0.171 4.171 10 C 0.308 3.692 11 O -0.398 6.398 12 O -0.271 6.271 13 C 0.044 3.956 14 C -0.185 4.185 15 C 0.022 3.978 16 N -0.315 5.315 17 C -0.384 4.384 18 H 0.085 0.915 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.734 3.266 22 H -0.202 1.202 23 H -0.217 1.217 24 H -0.215 1.215 25 C 0.048 3.952 26 C -0.175 4.175 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.210 0.790 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.115 0.885 43 H 0.077 0.923 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.477 25.278 -8.993 27.852 hybrid contribution -1.596 -1.113 0.711 2.072 sum 5.881 24.165 -8.282 26.213 Atomic orbital electron populations 1.20861 0.86438 1.04817 1.04355 1.19495 0.95964 0.84823 1.00448 1.24916 0.93156 1.01342 1.18290 1.85230 1.08478 1.01023 1.80876 1.21664 0.83722 0.95837 0.82703 1.91005 1.48541 1.42367 1.52705 1.46115 1.06425 1.07672 1.65165 1.21681 1.00431 0.82769 0.96440 1.21637 1.03383 0.93253 0.98833 1.23058 0.76282 0.87166 0.82724 1.90679 1.50838 1.65153 1.33177 1.86553 1.70629 1.36527 1.33366 1.23013 0.92315 0.79102 1.01139 1.22464 0.93786 1.00780 1.01429 1.20861 0.97021 0.88427 0.91510 1.44128 1.01730 1.54137 1.31533 1.19223 0.98717 1.00963 1.19509 0.91452 1.25084 0.98710 0.95372 1.00461 1.70023 1.30935 1.13608 1.40113 0.86200 0.79338 0.78372 0.82705 1.20200 1.21663 1.21470 1.20815 0.82573 0.89731 1.02123 1.22471 1.00193 0.98881 0.95982 0.89310 0.88937 0.90153 0.79040 0.87462 0.87492 0.87192 0.87147 0.90187 0.91332 0.92705 0.96035 0.92028 0.93514 0.95942 0.88496 0.92337 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.35 9.69 36.00 0.35 0.00 16 2 C 0.10 0.62 6.59 -82.51 -0.54 0.08 16 3 C -0.24 -1.30 11.25 28.82 0.32 -0.98 16 4 S 0.00 0.01 22.97 -107.50 -2.47 -2.46 16 5 C 0.48 5.30 8.27 53.82 0.45 5.75 16 6 O -0.47 -6.81 17.55 5.07 0.09 -6.72 16 7 N -0.53 -4.60 2.60 -117.28 -0.31 -4.91 16 8 C 0.11 1.00 4.56 -4.04 -0.02 0.98 16 9 C -0.13 -1.25 6.13 -27.88 -0.17 -1.42 16 10 C 0.47 6.38 7.93 36.00 0.29 6.66 16 11 O -0.51 -8.21 15.20 -18.75 -0.29 -8.49 16 12 O -0.35 -5.59 9.88 -39.25 -0.39 -5.98 16 13 C 0.10 1.76 2.42 -26.69 -0.06 1.70 16 14 C -0.15 -2.59 5.71 -26.61 -0.15 -2.74 16 15 C 0.15 3.11 6.52 -3.71 -0.02 3.08 16 16 N -0.59 -14.69 2.99 -172.32 -0.52 -15.20 16 17 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 18 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 19 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 20 N -0.90 -25.84 11.19 55.49 0.62 -25.22 16 21 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.17 4.09 5.30 -3.71 -0.02 4.07 16 26 C -0.14 -2.62 5.74 -26.61 -0.15 -2.78 16 27 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 0.14 8.10 -51.93 -0.42 -0.28 16 29 H 0.08 0.29 6.18 -51.93 -0.32 -0.03 16 30 H 0.19 0.47 8.06 -52.49 -0.42 0.05 16 31 H 0.11 1.16 7.76 -51.92 -0.40 0.75 16 32 H 0.11 0.79 6.07 -51.93 -0.32 0.47 16 33 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.54 7.15 -51.93 -0.37 1.17 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.10 2.53 6.07 -51.93 -0.31 2.21 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -32.60 374.72 -8.94 -41.54 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -6.34 Total: -1.89 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 0.03 Total: 7.37 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.20 Total: -45.33 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.58 Total: -21.19 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.47 Total: -2.46 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.60 -8.94 -41.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121067562.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.312 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds