Wall clock time and date at job start Sat Apr 11 2020 05:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32566 * 121.64556 * 2 1 4 4 S 1.77235 * 105.31962 * 180.19809 * 3 2 1 5 5 C 1.72205 * 94.84564 * 359.76407 * 4 3 2 6 6 O 1.21829 * 127.06085 * 180.02562 * 5 4 3 7 7 N 1.34249 * 105.88720 * 0.02562 * 5 4 3 8 8 C 1.46494 * 121.38290 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47640 * 90.02067 * 8 7 5 10 10 C 1.50697 * 109.47542 * 180.02562 * 9 8 7 11 11 O 1.20828 * 119.99576 * 359.97438 * 10 9 8 12 12 O 1.34227 * 120.00204 * 179.97438 * 10 9 8 13 13 C 1.45203 * 117.00080 * 179.97438 * 12 10 9 14 14 C 1.53036 * 109.46305 * 270.03208 * 13 12 10 15 15 C 1.53190 * 109.31506 * 178.59900 * 14 13 12 16 16 N 1.46931 * 108.76178 * 54.65729 * 15 14 13 17 17 C 1.36932 * 120.63085 * 126.40786 * 16 15 14 18 18 H 1.07995 * 120.00062 * 331.82243 * 17 16 15 19 19 C 1.38817 * 119.99724 * 151.82815 * 17 16 15 20 20 N 1.31613 * 120.00197 * 343.06241 * 19 17 16 21 21 Si 1.86803 * 119.99769 * 163.06757 * 19 17 16 22 22 H 1.48500 * 109.47233 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.46819 * 119.99872 * 21 19 17 24 24 H 1.48499 * 109.47248 * 239.99469 * 21 19 17 25 25 C 1.46925 * 118.73576 * 306.38310 * 16 15 14 26 26 C 1.53036 * 109.45814 * 149.97666 * 13 12 10 27 27 H 1.09000 * 109.47243 * 270.24406 * 1 2 3 28 28 H 1.09002 * 109.47408 * 30.23675 * 1 2 3 29 29 H 1.08999 * 109.47405 * 150.24020 * 1 2 3 30 30 H 1.07997 * 127.34192 * 359.94330 * 3 2 1 31 31 H 1.09007 * 109.46845 * 330.01956 * 8 7 5 32 32 H 1.08998 * 109.47403 * 210.02273 * 8 7 5 33 33 H 1.09006 * 109.46586 * 59.99901 * 9 8 7 34 34 H 1.08998 * 109.46891 * 300.00520 * 9 8 7 35 35 H 1.09001 * 109.45601 * 30.00429 * 13 12 10 36 36 H 1.09005 * 109.49810 * 298.56820 * 14 13 12 37 37 H 1.09003 * 109.50218 * 58.65920 * 14 13 12 38 38 H 1.09000 * 109.59868 * 294.86987 * 15 14 13 39 39 H 1.09000 * 109.70606 * 174.50378 * 15 14 13 40 40 H 0.97003 * 119.99949 * 180.02562 * 20 19 17 41 41 H 1.09007 * 109.59256 * 293.82181 * 25 16 15 42 42 H 1.09005 * 109.70514 * 173.46702 * 25 16 15 43 43 H 1.09007 * 109.49915 * 301.34048 * 26 13 12 44 44 H 1.08995 * 109.50127 * 61.40106 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9034 0.6303 -0.0059 5 6 3.5606 -1.0573 -0.0009 6 8 4.3673 -1.9703 -0.0018 7 7 2.2221 -1.1604 0.0042 8 6 1.5576 -2.4660 0.0090 9 6 1.3311 -2.9178 1.4531 10 6 0.6481 -4.2611 1.4580 11 8 0.3705 -4.8014 0.4135 12 8 0.3481 -4.8573 2.6226 13 6 -0.3099 -6.1497 2.5513 14 6 -1.8269 -5.9491 2.5293 15 6 -2.5167 -7.3123 2.4187 16 7 -2.0380 -8.1740 3.5084 17 6 -2.9241 -8.7901 4.3512 18 1 -3.8875 -8.3417 4.5434 19 6 -2.5838 -9.9911 4.9585 20 7 -1.5822 -10.7049 4.4900 21 14 -3.5476 -10.5942 6.4407 22 1 -4.6159 -9.6160 6.7679 23 1 -4.1597 -11.9112 6.1306 24 1 -2.6330 -10.7346 7.6022 25 6 -0.5906 -8.3622 3.6761 26 6 0.0777 -6.9871 3.7722 27 1 -0.3634 0.0044 1.0276 28 1 -0.3634 0.8879 -0.5175 29 1 -0.3634 -0.8921 -0.5101 30 1 1.8152 2.1367 -0.0008 31 1 2.1843 -3.1945 -0.5056 32 1 0.5980 -2.3871 -0.5017 33 1 0.7044 -2.1892 1.9676 34 1 2.2908 -2.9966 1.9639 35 1 0.0014 -6.6660 1.6431 36 1 -2.1419 -5.4551 3.4485 37 1 -2.1000 -5.3328 1.6726 38 1 -2.2740 -7.7682 1.4589 39 1 -3.5963 -7.1857 2.5005 40 1 -1.3447 -11.5443 4.9142 41 1 -0.1906 -8.9037 2.8188 42 1 -0.3967 -8.9272 4.5879 43 1 1.1604 -7.1099 3.8003 44 1 -0.2549 -6.4831 4.6795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121067562.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:45 Heat of formation + Delta-G solvation = -89.598959 kcal Electronic energy + Delta-G solvation = -27108.679663 eV Core-core repulsion = 23152.918784 eV Total energy + Delta-G solvation = -3955.760879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.24982 -41.58187 -39.21106 -38.72158 -37.41671 -34.75464 -34.47268 -32.42249 -32.08140 -31.46685 -29.33205 -27.25642 -26.18379 -24.59338 -24.00101 -23.68232 -21.91771 -21.26242 -21.05400 -19.10967 -19.02985 -18.89257 -18.04383 -17.59042 -17.36287 -17.01516 -16.74286 -16.11203 -15.69563 -15.48187 -15.41594 -15.06331 -14.94739 -14.71671 -14.54408 -14.34987 -14.30052 -14.19161 -13.73993 -13.31495 -13.16446 -13.08736 -12.71214 -12.65496 -12.49322 -12.46457 -12.32704 -12.17871 -12.06382 -11.96793 -11.89848 -11.66329 -11.43870 -11.21494 -11.09287 -10.65910 -10.58864 -8.97490 -8.77900 -7.92018 -5.38187 -0.14639 0.37036 0.85204 1.05934 1.07383 1.41276 1.47280 1.48964 1.59568 1.88896 2.49486 3.24445 3.36266 3.50457 3.55569 3.61188 3.74435 3.78291 3.83726 4.12396 4.13613 4.22903 4.34914 4.36355 4.51359 4.55089 4.63272 4.71316 4.77533 4.79484 4.81934 4.85506 4.94152 5.00480 5.02612 5.21093 5.31328 5.37017 5.46407 5.61187 5.66140 5.71264 6.20169 6.34676 6.61436 7.09273 7.78008 8.30886 9.15927 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.030938 B = 0.001979 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.806621 B =14146.404987 C =14503.831712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.091 3.909 3 C -0.220 4.220 4 S 0.000 6.000 5 C 0.459 3.541 6 O -0.521 6.521 7 N -0.529 5.529 8 C 0.115 3.885 9 C -0.118 4.118 10 C 0.466 3.534 11 O -0.534 6.534 12 O -0.353 6.353 13 C 0.105 3.895 14 C -0.130 4.130 15 C 0.145 3.855 16 N -0.611 5.611 17 C -0.263 4.263 18 H 0.072 0.928 19 C -0.051 4.051 20 N -0.937 5.937 21 Si 0.970 3.030 22 H -0.264 1.264 23 H -0.293 1.293 24 H -0.289 1.289 25 C 0.180 3.820 26 C -0.123 4.123 27 H 0.101 0.899 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.229 0.771 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.144 0.856 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.013 0.987 39 H 0.068 0.932 40 H 0.251 0.749 41 H -0.001 1.001 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.283 29.019 -8.452 30.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.018 4.018 3 C -0.356 4.356 4 S 0.243 5.757 5 C 0.143 3.857 6 O -0.405 6.405 7 N -0.249 5.249 8 C -0.011 4.011 9 C -0.157 4.157 10 C 0.310 3.690 11 O -0.424 6.424 12 O -0.270 6.270 13 C 0.051 3.949 14 C -0.169 4.169 15 C 0.019 3.981 16 N -0.334 5.334 17 C -0.393 4.393 18 H 0.090 0.910 19 C -0.247 4.247 20 N -0.582 5.582 21 Si 0.798 3.202 22 H -0.188 1.188 23 H -0.220 1.220 24 H -0.216 1.216 25 C 0.054 3.946 26 C -0.162 4.162 27 H 0.120 0.880 28 H 0.134 0.866 29 H 0.096 0.904 30 H 0.246 0.754 31 H 0.100 0.900 32 H 0.145 0.855 33 H 0.162 0.838 34 H 0.126 0.874 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.031 0.969 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.017 0.983 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.886 28.781 -8.703 30.639 hybrid contribution -1.113 -2.050 0.515 2.389 sum 4.774 26.731 -8.188 28.362 Atomic orbital electron populations 1.21001 0.83906 1.05869 1.05478 1.20016 0.97353 0.83821 1.00649 1.25454 0.90619 1.02763 1.16812 1.85256 1.11300 0.98955 1.80193 1.22075 0.84259 0.96472 0.82931 1.90964 1.50034 1.44255 1.55259 1.46131 1.05861 1.08414 1.64511 1.21601 1.00736 0.82673 0.96055 1.21654 1.03243 0.91255 0.99510 1.23820 0.75555 0.87991 0.81635 1.90679 1.51893 1.65959 1.33845 1.86545 1.70661 1.35236 1.34511 1.22648 0.92648 0.80150 0.99502 1.22261 0.93169 0.98897 1.02603 1.20986 0.97831 0.89334 0.89939 1.44390 1.01908 1.54603 1.32528 1.19563 0.99127 1.00981 1.19655 0.91047 1.25866 0.99962 0.95751 1.03072 1.70177 1.32704 1.13935 1.41433 0.85169 0.78173 0.77645 0.79200 1.18823 1.22029 1.21593 1.20570 0.82728 0.91718 0.99585 1.22182 1.00593 0.96629 0.96829 0.88038 0.86598 0.90407 0.75413 0.90029 0.85533 0.83829 0.87356 0.91704 0.90838 0.90513 0.96869 0.91306 0.93948 0.98290 0.91441 0.90888 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.24 9.69 71.23 0.69 0.45 16 2 C 0.09 0.80 6.59 40.71 0.27 1.07 16 3 C -0.22 -1.60 11.25 66.67 0.75 -0.85 16 4 S 0.00 0.00 22.97 -56.49 -1.30 -1.30 16 5 C 0.46 10.12 8.27 129.87 1.07 11.19 16 6 O -0.52 -15.98 17.55 -4.76 -0.08 -16.06 16 7 N -0.53 -8.32 2.60 -643.43 -1.68 -10.00 16 8 C 0.11 1.90 4.56 86.38 0.39 2.30 16 9 C -0.12 -1.99 6.13 29.85 0.18 -1.81 16 10 C 0.47 12.00 7.93 71.23 0.56 12.56 16 11 O -0.53 -16.66 15.20 21.96 0.33 -16.33 16 12 O -0.35 -10.46 9.88 -51.39 -0.51 -10.97 16 13 C 0.10 3.67 2.42 30.62 0.07 3.75 16 14 C -0.13 -4.42 5.71 30.67 0.18 -4.24 16 15 C 0.14 5.99 6.52 86.36 0.56 6.55 16 16 N -0.61 -30.56 2.99 -699.08 -2.09 -32.65 16 17 C -0.26 -14.26 9.58 84.04 0.81 -13.46 16 18 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 19 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16 20 N -0.94 -55.12 11.19 21.65 0.24 -54.88 16 21 Si 0.97 44.20 29.59 68.60 2.03 46.23 16 22 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 25 C 0.18 8.72 5.30 86.36 0.46 9.17 16 26 C -0.12 -4.72 5.74 30.67 0.18 -4.54 16 27 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 28 H 0.12 -0.23 8.10 -2.39 -0.02 -0.25 16 29 H 0.08 0.26 6.18 -2.39 -0.01 0.25 16 30 H 0.23 -0.08 8.06 -2.91 -0.02 -0.10 16 31 H 0.08 1.81 7.76 -2.38 -0.02 1.79 16 32 H 0.13 1.59 6.07 -2.39 -0.01 1.57 16 33 H 0.14 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 2.49 7.15 -2.39 -0.02 2.47 16 36 H 0.07 2.45 8.14 -2.38 -0.02 2.44 16 37 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.07 2.70 7.93 -2.39 -0.02 2.68 16 40 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 41 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 42 H 0.07 3.65 6.07 -2.38 -0.01 3.64 16 43 H 0.07 2.55 8.14 -2.38 -0.02 2.54 16 44 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -73.52 374.72 4.55 -68.96 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 1.01 Total: 7.26 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 6.59 Total: 19.73 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -3.53 Total: -97.53 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -0.26 Total: -43.36 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.30 Total: -1.30 kcal Total: -73.52 4.55 -68.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121067562.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.635 kcal (2) G-P(sol) polarization free energy of solvation -73.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds