Wall clock time and date at job start Sat Apr 11 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35904 * 117.00042 * 2 1 4 4 C 1.38852 * 119.98678 * 0.02562 * 3 2 1 5 5 C 1.38238 * 120.22367 * 179.97438 * 4 3 2 6 6 C 1.38017 * 120.20172 * 0.02562 * 5 4 3 7 7 C 1.39517 * 119.97136 * 359.79076 * 6 5 4 8 8 C 1.47954 * 120.11592 * 180.22885 * 7 6 5 9 9 N 1.31086 * 125.63719 * 179.90568 * 8 7 6 10 10 C 1.34929 * 109.04737 * 179.83651 * 9 8 7 11 11 C 1.47269 * 126.06413 * 180.13549 * 10 9 8 12 12 O 1.21657 * 120.00207 * 174.68140 * 11 10 9 13 13 N 1.34774 * 119.99653 * 354.68061 * 11 10 9 14 14 C 1.36953 * 119.99838 * 184.27228 * 13 11 10 15 15 H 1.08002 * 119.99451 * 21.82640 * 14 13 11 16 16 C 1.38976 * 119.99940 * 201.82699 * 14 13 11 17 17 N 1.31413 * 120.00133 * 11.09524 * 16 14 13 18 18 Si 1.86798 * 119.99916 * 191.09817 * 16 14 13 19 19 H 1.48500 * 109.47507 * 59.99766 * 18 16 14 20 20 H 1.48504 * 109.47148 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46950 * 299.99798 * 18 16 14 22 22 C 1.46500 * 120.00111 * 4.27609 * 13 11 10 23 23 C 1.47196 * 109.47054 * 83.11418 * 22 13 11 24 24 N 5.74483 * 153.86238 * 244.72905 * 2 1 3 25 25 C 1.36664 * 107.87961 * 0.42601 * 10 9 8 26 26 C 1.50699 * 126.54152 * 179.74651 * 25 10 9 27 27 N 1.35933 * 106.92162 * 359.74453 * 25 10 9 28 28 H 0.97000 * 126.28492 * 179.97438 * 27 25 10 29 29 C 1.38465 * 119.98716 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47191 * 60.00135 * 1 2 3 31 31 H 1.08999 * 109.47154 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46707 * 300.00107 * 1 2 3 33 33 H 1.07993 * 119.89109 * 359.97438 * 4 3 2 34 34 H 1.07998 * 119.89807 * 180.02562 * 5 4 3 35 35 H 1.07996 * 120.01890 * 180.02562 * 6 5 4 36 36 H 0.96996 * 119.99765 * 180.02562 * 17 16 14 37 37 H 1.09007 * 109.46649 * 203.11107 * 22 13 11 38 38 H 1.08996 * 109.47242 * 323.10801 * 22 13 11 39 39 H 1.08996 * 109.46979 * 270.02657 * 26 25 10 40 40 H 1.09004 * 109.47002 * 30.02055 * 26 25 10 41 41 H 1.09004 * 109.47279 * 150.02120 * 26 25 10 42 42 H 1.08003 * 120.09967 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2895 2.3753 0.0005 5 6 1.9120 3.6095 0.0011 6 6 3.2896 3.6923 0.0005 7 6 4.0579 2.5277 0.0039 8 6 5.5349 2.6127 0.0084 9 7 6.3587 1.5930 0.0136 10 6 7.6275 2.0519 0.0129 11 6 8.8477 1.2273 0.0148 12 8 9.9391 1.7556 -0.0837 13 7 8.7551 -0.1127 0.1257 14 6 9.8911 -0.8724 0.2156 15 1 10.8157 -0.4239 0.5479 16 6 9.8540 -2.2204 -0.1208 17 7 8.7997 -2.7174 -0.7277 18 14 11.3028 -3.3257 0.2899 19 1 11.5228 -3.3284 1.7585 20 1 11.0169 -4.7082 -0.1709 21 1 12.5208 -2.8191 -0.3922 22 6 7.4394 -0.7566 0.1500 23 6 6.9570 -0.9392 -1.2286 24 7 6.5863 -1.0804 -2.2886 25 6 7.5797 3.4177 0.0168 26 6 8.7584 4.3567 0.0229 27 7 6.2662 3.7676 0.0139 28 1 5.9128 4.6710 0.0159 29 6 3.4287 1.2831 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 0.2111 2.3164 0.0005 34 1 1.3184 4.5118 0.0019 35 1 3.7729 4.6581 0.0014 36 1 8.7737 -3.6582 -0.9621 37 1 7.5192 -1.7278 0.6387 38 1 6.7381 -0.1295 0.7004 39 1 9.0398 4.5797 1.0520 40 1 9.5985 3.8887 -0.4902 41 1 8.4894 5.2809 -0.4887 42 1 4.0183 0.3782 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125758101.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:56 Heat of formation + Delta-G solvation = 61.916079 kcal Electronic energy + Delta-G solvation = -29029.979332 eV Core-core repulsion = 24977.637438 eV Total energy + Delta-G solvation = -4052.341894 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.92278 -40.11649 -38.31815 -37.46191 -35.54520 -34.10395 -33.02044 -32.25403 -31.44328 -30.87593 -29.89280 -27.55998 -27.16666 -26.49698 -24.80394 -23.27352 -22.44406 -21.66784 -20.57004 -18.87072 -18.34186 -17.63066 -17.11458 -16.27701 -16.06714 -16.00352 -15.87783 -15.53426 -15.13420 -14.63886 -14.50956 -14.02867 -13.76985 -13.59028 -13.23110 -13.02756 -13.00818 -12.72784 -12.65878 -12.46609 -12.32007 -12.00110 -11.89560 -11.72258 -11.32487 -11.28368 -11.09450 -11.03509 -11.01904 -10.45098 -10.37490 -10.29856 -9.86268 -9.48127 -9.32441 -9.09345 -8.58343 -8.41943 -7.89802 -7.65501 -6.35793 -3.91849 0.80502 1.29552 2.11251 2.86748 2.88128 3.24214 3.25340 3.27912 3.30667 3.77640 3.97626 4.21839 4.24404 4.39740 4.58255 4.59480 4.77566 4.90970 4.92546 4.94471 5.01312 5.10107 5.13016 5.25394 5.28054 5.34108 5.39787 5.58266 5.78993 5.81538 5.86572 5.94918 6.09384 6.18149 6.22683 6.33494 6.50200 6.54527 6.60760 6.89709 7.03407 7.26168 7.40704 7.53530 8.00040 8.15462 8.44607 9.09729 9.19857 9.31817 9.89465 10.66805 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011949 B = 0.003788 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.684158 B = 7389.485670 C = 9397.533156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.132 3.868 4 C -0.208 4.208 5 C -0.077 4.077 6 C -0.154 4.154 7 C 0.040 3.960 8 C 0.224 3.776 9 N -0.435 5.435 10 C -0.016 4.016 11 C 0.526 3.474 12 O -0.578 6.578 13 N -0.421 5.421 14 C -0.306 4.306 15 H 0.107 0.893 16 C 0.031 3.969 17 N -0.876 5.876 18 Si 0.934 3.066 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.213 3.787 23 C 0.275 3.725 24 N -0.496 5.496 25 C 0.050 3.950 26 C -0.081 4.081 27 N -0.558 5.558 28 H 0.417 0.583 29 C -0.110 4.110 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.119 0.881 36 H 0.274 0.726 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.057 0.943 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.286 12.261 5.618 21.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.087 3.913 4 C -0.227 4.227 5 C -0.095 4.095 6 C -0.174 4.174 7 C 0.038 3.962 8 C -0.034 4.034 9 N -0.156 5.156 10 C -0.148 4.148 11 C 0.314 3.686 12 O -0.462 6.462 13 N -0.139 5.139 14 C -0.434 4.434 15 H 0.125 0.875 16 C -0.173 4.173 17 N -0.515 5.515 18 Si 0.761 3.239 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.198 1.198 22 C 0.086 3.914 23 C -0.043 4.043 24 N -0.177 5.177 25 C -0.070 4.070 26 C -0.139 4.139 27 N -0.163 5.163 28 H 0.255 0.745 29 C -0.131 4.131 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.073 0.927 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.137 0.863 36 H 0.085 0.915 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.094 0.906 40 H 0.128 0.872 41 H 0.076 0.924 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.404 10.987 3.945 20.134 hybrid contribution 0.391 0.735 0.364 0.908 sum -16.013 11.721 4.309 20.307 Atomic orbital electron populations 1.23063 0.78475 1.04058 1.01145 1.86146 1.21237 1.26569 1.88494 1.18851 0.91980 0.84336 0.96135 1.21283 1.00049 0.92317 1.09056 1.20698 0.93896 0.97050 0.97872 1.20879 0.94013 0.96884 1.05593 1.17237 0.86558 0.93158 0.99271 1.21107 0.92115 0.81310 1.08912 1.70753 1.00172 1.27898 1.16766 1.20819 0.92130 0.91072 1.10749 1.16702 0.85863 0.82262 0.83749 1.90589 1.27232 1.72008 1.56373 1.43390 1.05606 1.03879 1.60976 1.19732 0.90089 0.90790 1.42752 0.87526 1.25399 0.98499 0.98048 0.95334 1.69828 1.29261 1.15282 1.37122 0.85867 0.80735 0.78392 0.78948 1.19665 1.20948 1.19797 1.19166 0.84653 1.01128 0.86451 1.28821 0.90727 0.89777 0.94983 1.80630 1.12127 1.12335 1.12565 1.21319 0.84485 0.95773 1.05436 1.20465 0.94296 0.95835 1.03295 1.43036 1.06195 1.09528 1.57500 0.74485 1.20439 0.91299 0.98431 1.02902 0.92707 0.88161 0.92689 0.85384 0.85487 0.86339 0.91524 0.86240 0.86997 0.90587 0.87220 0.92392 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.90 10.49 -19.44 -0.20 -4.10 16 3 C 0.13 1.69 6.68 -39.27 -0.26 1.42 16 4 C -0.21 -2.06 9.03 -39.35 -0.36 -2.42 16 5 C -0.08 -0.70 10.03 -39.66 -0.40 -1.10 16 6 C -0.15 -1.60 9.69 -39.19 -0.38 -1.98 16 7 C 0.04 0.55 5.87 -104.98 -0.62 -0.07 16 8 C 0.22 3.58 7.76 -154.69 -1.20 2.38 16 9 N -0.43 -8.47 6.60 -7.84 -0.05 -8.52 16 10 C -0.02 -0.34 6.61 -83.40 -0.55 -0.89 16 11 C 0.53 13.03 7.53 -12.59 -0.09 12.94 16 12 O -0.58 -15.23 14.45 5.23 0.08 -15.16 16 13 N -0.42 -10.79 2.60 -119.21 -0.31 -11.10 16 14 C -0.31 -8.22 9.28 -14.99 -0.14 -8.36 16 15 H 0.11 2.92 7.43 -52.49 -0.39 2.53 16 16 C 0.03 0.80 5.09 -17.46 -0.09 0.71 16 17 N -0.88 -23.27 9.11 55.50 0.51 -22.76 16 18 Si 0.93 20.32 29.57 -169.99 -5.03 15.30 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 C 0.21 4.97 4.75 -6.83 -0.03 4.94 16 23 C 0.27 6.96 12.61 -20.90 -0.26 6.69 16 24 N -0.50 -13.26 18.51 41.99 0.78 -12.49 16 25 C 0.05 0.83 7.27 -81.34 -0.59 0.23 16 26 C -0.08 -1.13 9.93 36.01 0.36 -0.77 16 27 N -0.56 -7.48 6.02 -6.65 -0.04 -7.52 16 28 H 0.42 3.75 8.05 -40.82 -0.33 3.42 16 29 C -0.11 -1.63 9.62 -39.04 -0.38 -2.00 16 30 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.33 7.66 -51.92 -0.40 -0.07 16 33 H 0.13 0.93 6.28 -52.49 -0.33 0.60 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 35 H 0.12 0.91 7.15 -52.49 -0.38 0.54 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.12 2.82 6.36 -51.93 -0.33 2.49 16 38 H 0.11 2.37 5.29 -51.93 -0.27 2.10 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.11 1.86 6.35 -51.93 -0.33 1.53 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.15 2.46 7.83 -52.48 -0.41 2.05 16 LS Contribution 361.07 15.07 5.44 5.44 Total: -1.00 -34.35 361.07 -7.22 -41.57 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -4.39 Total: 6.40 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: -4.00 Total: 12.94 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: 0.88 Total: -62.39 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.13 Total: -19.26 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.35 -7.22 -41.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125758101.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.489 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds