Wall clock time and date at job start Sat Apr 11 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38311 * 119.96305 * 2 1 4 4 C 1.38263 * 120.14882 * 180.02562 * 3 2 1 5 5 C 1.38129 * 120.07024 * 359.97379 * 4 3 2 6 6 C 1.38878 * 119.92682 * 0.02562 * 5 4 3 7 7 N 1.39971 * 120.06984 * 179.97438 * 6 5 4 8 8 N 1.39867 * 119.79199 * 130.62138 * 7 6 5 9 9 C 1.29863 * 121.11722 * 198.83265 * 8 7 6 10 10 C 1.46507 * 119.56175 * 180.17851 * 9 8 7 11 11 O 1.21729 * 120.00028 * 173.28920 * 10 9 8 12 12 N 1.34770 * 119.99898 * 353.28794 * 10 9 8 13 13 C 1.36698 * 120.00123 * 184.66170 * 12 10 9 14 14 H 1.08001 * 119.99756 * 20.30979 * 13 12 10 15 15 C 1.39130 * 120.00280 * 200.31201 * 13 12 10 16 16 N 1.31320 * 119.99891 * 15.05088 * 15 13 12 17 17 Si 1.86798 * 120.00271 * 195.05215 * 15 13 12 18 18 H 1.48500 * 109.46947 * 59.99779 * 17 15 13 19 19 H 1.48496 * 109.47254 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47005 * 299.99826 * 17 15 13 21 21 C 1.46500 * 120.00165 * 4.66116 * 12 10 9 22 22 C 1.47195 * 109.47320 * 82.82761 * 21 12 10 23 23 N 4.84157 * 82.01268 * 173.61919 * 2 1 3 24 24 C 1.50552 * 120.87929 * 0.20335 * 9 8 7 25 25 C 1.53009 * 109.60125 * 325.75495 * 24 9 8 26 26 C 1.34742 * 119.79440 * 310.34356 * 7 6 5 27 27 O 1.21246 * 120.11115 * 0.02562 * 26 7 6 28 28 C 1.38084 * 119.96657 * 180.27117 * 2 1 3 29 29 H 1.08995 * 109.46705 * 90.00638 * 1 2 3 30 30 H 1.09003 * 109.46846 * 210.00063 * 1 2 3 31 31 H 1.08999 * 109.47358 * 330.00087 * 1 2 3 32 32 H 1.08009 * 119.92448 * 0.02562 * 3 2 1 33 33 H 1.07995 * 119.96599 * 179.97438 * 4 3 2 34 34 H 1.07998 * 120.03917 * 179.97438 * 5 4 3 35 35 H 0.96999 * 119.99898 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.47378 * 202.82783 * 21 12 10 37 37 H 1.09005 * 109.47234 * 322.82402 * 21 12 10 38 38 H 1.08996 * 109.45116 * 85.79798 * 24 9 8 39 39 H 1.09007 * 109.44765 * 205.74465 * 24 9 8 40 40 H 1.08995 * 109.51073 * 167.39698 * 25 24 9 41 41 H 1.09006 * 109.51084 * 287.54452 * 25 24 9 42 42 H 1.07999 * 120.03417 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5805 1.2027 -0.0005 5 6 4.2764 0.0096 -0.0005 6 6 3.5859 -1.1953 -0.0005 7 7 4.2881 -2.4061 -0.0010 8 7 3.9535 -3.4039 0.9202 9 6 4.7812 -4.3652 1.1986 10 6 4.3939 -5.3949 2.1661 11 8 5.1092 -6.3639 2.3427 12 7 3.2458 -5.2693 2.8606 13 6 2.9307 -6.1793 3.8308 14 1 3.7059 -6.7882 4.2722 15 6 1.6116 -6.3212 4.2496 16 7 0.6364 -5.8145 3.5308 17 14 1.2276 -7.2325 5.8343 18 1 1.8937 -6.5492 6.9721 19 1 -0.2408 -7.2440 6.0554 20 1 1.7247 -8.6284 5.7355 21 6 2.3353 -4.1575 2.5757 22 6 1.4880 -4.5004 1.4220 23 7 0.8343 -4.7649 0.5329 24 6 6.1335 -4.4352 0.5407 25 6 6.0347 -3.9098 -0.8930 26 6 5.2785 -2.6053 -0.8927 27 8 5.5609 -1.7383 -1.6919 28 6 2.1968 -1.1962 -0.0057 29 1 -0.3632 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6560 2.1326 0.0004 33 1 4.1168 2.1401 -0.0010 34 1 5.3564 0.0137 -0.0014 35 1 -0.2833 -5.9131 3.8229 36 1 1.7059 -3.9712 3.4460 37 1 2.9145 -3.2627 2.3480 38 1 6.8423 -3.8267 1.1023 39 1 6.4763 -5.4699 0.5248 40 1 7.0364 -3.7499 -1.2919 41 1 5.5074 -4.6362 -1.5114 42 1 1.6568 -2.1315 -0.0097 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126658622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:00 Heat of formation + Delta-G solvation = 46.237591 kcal Electronic energy + Delta-G solvation = -29970.217678 eV Core-core repulsion = 25917.195914 eV Total energy + Delta-G solvation = -4053.021764 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.29124 -40.85447 -39.86992 -38.24298 -37.70215 -36.28546 -35.45612 -34.05352 -33.41174 -32.45350 -30.91472 -29.25619 -28.04829 -27.37786 -26.49348 -24.72886 -23.52742 -22.94691 -21.34689 -19.86165 -19.36957 -19.01255 -18.60715 -18.01289 -17.40216 -17.18594 -17.08313 -16.60994 -16.14970 -15.85765 -15.66411 -15.31135 -15.10265 -14.91725 -14.81625 -14.64845 -14.19562 -14.09480 -13.89390 -13.74921 -13.55634 -13.37898 -13.15012 -13.13842 -13.07049 -12.88333 -12.70303 -12.43656 -12.41401 -12.31265 -12.12839 -12.04583 -11.58853 -11.21222 -10.96874 -10.67954 -10.36175 -10.00981 -9.74155 -9.27302 -8.50425 -6.08918 -0.18688 0.15534 0.37249 1.02762 1.26068 1.49147 1.50939 1.59783 1.85317 2.12357 2.30225 2.38475 2.55848 2.80430 2.98191 3.13369 3.47349 3.59037 3.68595 3.81959 3.92078 3.95090 4.02902 4.15541 4.19118 4.29822 4.39142 4.50119 4.67036 4.70805 4.76100 4.77611 4.80146 4.89217 4.92386 5.07473 5.21220 5.30318 5.36969 5.41471 5.46069 5.62361 5.86897 5.99525 6.22875 6.46684 6.77174 6.94560 7.00780 7.13583 7.70942 8.49622 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.004604 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.926213 B = 6080.177832 C = 7801.872344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.080 4.080 3 C -0.115 4.115 4 C -0.098 4.098 5 C -0.123 4.123 6 C 0.135 3.865 7 N -0.418 5.418 8 N -0.243 5.243 9 C 0.106 3.894 10 C 0.474 3.526 11 O -0.596 6.596 12 N -0.409 5.409 13 C -0.334 4.334 14 H 0.102 0.898 15 C 0.008 3.992 16 N -0.880 5.880 17 Si 1.000 3.000 18 H -0.256 1.256 19 H -0.278 1.278 20 H -0.275 1.275 21 C 0.212 3.788 22 C 0.278 3.722 23 N -0.510 5.510 24 C -0.098 4.098 25 C -0.130 4.130 26 C 0.490 3.510 27 O -0.539 6.539 28 C -0.131 4.131 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.121 0.879 35 H 0.282 0.718 36 H 0.123 0.877 37 H 0.139 0.861 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.150 0.850 41 H 0.110 0.890 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.347 13.585 -2.220 14.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.081 4.081 3 C -0.133 4.133 4 C -0.117 4.117 5 C -0.143 4.143 6 C 0.045 3.955 7 N -0.231 5.231 8 N -0.055 5.055 9 C -0.084 4.084 10 C 0.263 3.737 11 O -0.480 6.480 12 N -0.126 5.126 13 C -0.463 4.463 14 H 0.120 0.880 15 C -0.197 4.197 16 N -0.517 5.517 17 Si 0.822 3.178 18 H -0.180 1.180 19 H -0.203 1.203 20 H -0.201 1.201 21 C 0.086 3.914 22 C -0.039 4.039 23 N -0.190 5.190 24 C -0.138 4.138 25 C -0.169 4.169 26 C 0.281 3.719 27 O -0.413 6.413 28 C -0.152 4.152 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.178 0.822 33 H 0.178 0.822 34 H 0.139 0.861 35 H 0.093 0.907 36 H 0.141 0.859 37 H 0.155 0.845 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.168 0.832 41 H 0.128 0.872 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.894 13.607 -3.795 14.420 hybrid contribution 0.352 -1.228 0.616 1.418 sum 3.246 12.379 -3.179 13.186 Atomic orbital electron populations 1.20833 0.89441 1.03593 1.03029 1.20087 0.97384 0.92189 0.98405 1.21451 0.94182 0.98105 0.99569 1.21337 0.94525 0.97613 0.98184 1.21150 1.00223 0.91301 1.01675 1.17654 0.91029 0.83262 1.03556 1.46584 1.33279 1.13407 1.29792 1.75498 1.24344 0.99687 1.05922 1.25196 0.95362 0.92606 0.95268 1.17416 0.85498 0.86915 0.83897 1.90682 1.55112 1.32984 1.69235 1.43765 1.16126 1.22790 1.29884 1.19944 0.94492 1.18436 1.13405 0.88020 1.26242 0.94181 0.97508 1.01796 1.69873 1.00959 1.43746 1.37121 0.84873 0.77257 0.78329 0.77300 1.17970 1.20263 1.20055 1.19482 0.90434 0.89919 0.91602 1.29106 0.91867 0.90908 0.92027 1.80816 1.12439 1.10172 1.15618 1.20955 0.92166 1.06824 0.93830 1.21926 1.04103 0.92338 0.98568 1.21977 0.79276 0.91148 0.79512 1.90694 1.65748 1.46250 1.38658 1.21033 0.92458 0.98902 1.02760 0.90444 0.92792 0.88677 0.82189 0.82202 0.86070 0.90747 0.85922 0.84460 0.86058 0.85983 0.83180 0.87158 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.33 10.01 71.24 0.71 -1.62 16 2 C -0.08 -2.02 5.88 -19.88 -0.12 -2.14 16 3 C -0.12 -2.31 9.70 22.29 0.22 -2.10 16 4 C -0.10 -2.07 10.04 22.25 0.22 -1.85 16 5 C -0.12 -3.41 8.71 22.40 0.20 -3.22 16 6 C 0.14 4.40 5.63 38.16 0.21 4.61 16 7 N -0.42 -14.11 3.57 -303.43 -1.08 -15.19 16 8 N -0.24 -8.68 5.81 -43.58 -0.25 -8.94 16 9 C 0.11 3.78 6.68 44.96 0.30 4.08 16 10 C 0.47 20.95 7.48 86.40 0.65 21.60 16 11 O -0.60 -29.17 15.91 -4.44 -0.07 -29.24 16 12 N -0.41 -18.88 2.60 -650.20 -1.69 -20.57 16 13 C -0.33 -16.40 9.29 84.15 0.78 -15.61 16 14 H 0.10 5.15 7.42 -2.91 -0.02 5.13 16 15 C 0.01 0.35 5.01 84.98 0.43 0.78 16 16 N -0.88 -42.18 9.26 21.69 0.20 -41.98 16 17 Si 1.00 37.23 29.58 68.60 2.03 39.26 16 18 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 19 H -0.28 -10.11 7.11 99.48 0.71 -9.40 16 20 H -0.28 -10.49 7.11 99.48 0.71 -9.79 16 21 C 0.21 8.87 4.74 84.57 0.40 9.27 16 22 C 0.28 12.69 11.85 89.45 1.06 13.75 16 23 N -0.51 -24.75 18.53 19.99 0.37 -24.38 16 24 C -0.10 -2.57 5.89 29.80 0.18 -2.40 16 25 C -0.13 -3.12 6.20 29.88 0.19 -2.93 16 26 C 0.49 15.52 7.32 87.69 0.64 16.16 16 27 O -0.54 -19.05 15.73 -2.93 -0.05 -19.10 16 28 C -0.13 -4.23 9.39 22.39 0.21 -4.02 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.05 1.30 8.09 -2.39 -0.02 1.28 16 31 H 0.09 1.43 8.08 -2.39 -0.02 1.41 16 32 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 33 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 34 H 0.12 3.34 7.46 -2.91 -0.02 3.32 16 35 H 0.28 12.95 8.31 -92.71 -0.77 12.18 16 36 H 0.12 5.18 6.35 -2.39 -0.02 5.16 16 37 H 0.14 5.21 5.15 -12.02 -0.06 5.14 16 38 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.12 3.17 7.47 -2.38 -0.02 3.15 16 40 H 0.15 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.11 2.61 8.14 -2.38 -0.02 2.59 16 42 H 0.10 3.86 7.49 -2.91 -0.02 3.84 16 Total: -1.00 -65.87 360.62 6.76 -59.11 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 1.03 Total: 26.67 kcal Atomic # 6 Polarization: 28.08 SS G_CDS: 6.27 Total: 34.35 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -2.45 Total: -111.05 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: -0.12 Total: -48.34 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.26 kcal Total: -65.87 6.76 -59.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126658622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.344 kcal (2) G-P(sol) polarization free energy of solvation -65.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds