Wall clock time and date at job start Sat Apr 11 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99493 * 359.97438 * 4 3 2 6 6 S 1.76197 * 120.00083 * 180.02562 * 5 4 3 7 7 O 1.42100 * 106.40404 * 203.54089 * 6 5 4 8 8 O 1.42107 * 106.40239 * 336.45686 * 6 5 4 9 9 N 1.65594 * 107.21836 * 89.99654 * 6 5 4 10 10 C 1.46507 * 120.00140 * 65.00715 * 9 6 5 11 11 C 1.53000 * 109.47231 * 165.00061 * 10 9 6 12 12 C 1.53003 * 109.46659 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.46719 * 179.97438 * 12 11 10 14 14 O 1.21291 * 120.00279 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99844 * 179.97438 * 13 12 11 16 16 C 1.37104 * 119.99916 * 179.97438 * 15 13 12 17 17 H 1.07998 * 119.99641 * 0.02562 * 16 15 13 18 18 C 1.38945 * 119.99776 * 180.02562 * 16 15 13 19 19 N 1.31412 * 120.00040 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00015 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47494 * 90.00021 * 20 18 16 22 22 H 1.48504 * 109.47198 * 210.00251 * 20 18 16 23 23 H 1.48508 * 109.47033 * 330.00082 * 20 18 16 24 24 C 1.38214 * 120.00052 * 0.02562 * 5 4 3 25 25 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 26 26 C 1.50695 * 119.99818 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 30 30 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 31 31 H 1.07994 * 120.00533 * 180.02562 * 4 3 2 32 32 H 0.97006 * 120.00294 * 244.99787 * 9 6 5 33 33 H 1.09003 * 109.46234 * 284.99704 * 10 9 6 34 34 H 1.08994 * 109.46899 * 44.99186 * 10 9 6 35 35 H 1.09002 * 109.46697 * 299.99064 * 11 10 9 36 36 H 1.08990 * 109.47432 * 59.99595 * 11 10 9 37 37 H 1.08997 * 109.47237 * 299.99316 * 12 11 10 38 38 H 1.09003 * 109.47232 * 59.99544 * 12 11 10 39 39 H 0.96999 * 120.00365 * 0.02562 * 15 13 12 40 40 H 0.97005 * 120.00077 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.00080 * 180.02562 * 24 5 4 42 42 H 1.08995 * 109.47734 * 90.00064 * 26 25 2 43 43 H 1.09002 * 109.46829 * 210.00009 * 26 25 2 44 44 H 1.09000 * 109.47496 * 329.99322 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 16 6.0337 0.0000 0.0030 7 8 6.4354 -1.2500 -0.5406 8 8 6.4354 1.2495 -0.5418 9 7 6.5226 0.0008 1.5851 10 6 6.2267 -1.1487 2.4439 11 6 7.0846 -1.0747 3.7086 12 6 6.7750 -2.2749 4.6056 13 6 7.6204 -2.2024 5.8511 14 8 8.3946 -1.2816 6.0058 15 7 7.5161 -3.1606 6.7930 16 6 8.2855 -3.0949 7.9259 17 1 8.9749 -2.2751 8.0635 18 6 8.1784 -4.0831 8.8967 19 7 7.3399 -5.0810 8.7289 20 14 9.2262 -3.9933 10.4405 21 1 8.4994 -3.2328 11.4886 22 1 9.5056 -5.3673 10.9299 23 1 10.5069 -3.3083 10.1304 24 6 3.5806 -1.1969 0.0016 25 6 2.1981 -1.1970 0.0058 26 6 1.4446 -2.5020 0.0116 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.6583 2.1327 -0.0004 31 1 4.1204 2.1326 0.0010 32 1 7.0051 0.7623 1.9433 33 1 5.1721 -1.1347 2.7188 34 1 6.4500 -2.0705 1.9067 35 1 8.1392 -1.0887 3.4335 36 1 6.8613 -0.1530 4.2456 37 1 5.7204 -2.2606 4.8806 38 1 6.9980 -3.1970 4.0687 39 1 6.8972 -3.8972 6.6692 40 1 7.2654 -5.7711 9.4065 41 1 4.1206 -2.1322 0.0029 42 1 1.2633 -2.8215 -1.0146 43 1 2.0335 -3.2593 0.5292 44 1 0.4920 -2.3694 0.5245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126920697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:04 Heat of formation + Delta-G solvation = -108.884143 kcal Electronic energy + Delta-G solvation = -26419.362433 eV Core-core repulsion = 22462.765286 eV Total energy + Delta-G solvation = -3956.597147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.98000 -38.35625 -37.40379 -36.11758 -35.99152 -34.00195 -33.95579 -32.63156 -31.95862 -31.14564 -28.20895 -27.03747 -26.67197 -24.45661 -22.72425 -22.00616 -21.62492 -19.60334 -19.00703 -18.01190 -17.79755 -17.40493 -16.67195 -16.18203 -15.79396 -15.59487 -15.32428 -14.78359 -14.72555 -14.56171 -14.33895 -13.94764 -13.74179 -13.60496 -13.25109 -13.12975 -12.82796 -12.59726 -12.53417 -12.47418 -12.26954 -12.19241 -12.11505 -12.03777 -11.67694 -11.47790 -11.24570 -11.15782 -11.10744 -10.95825 -10.57721 -10.40673 -10.22756 -9.63294 -9.53309 -9.45358 -9.13733 -8.42634 -7.99182 -6.43834 -3.84716 0.17733 0.50411 0.92441 2.77283 3.13765 3.16345 3.25257 3.31264 3.60181 3.89589 4.07560 4.16165 4.31484 4.39251 4.47629 4.71097 4.78288 4.83377 4.97910 5.04378 5.04838 5.12996 5.20465 5.24717 5.26271 5.35616 5.36187 5.40865 5.58039 5.63622 5.71758 5.73078 5.78023 5.82808 5.85574 5.99431 6.11258 6.42595 6.45051 6.49358 6.58117 6.82401 7.53339 8.03893 8.58408 9.15495 9.52710 10.03697 10.73809 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014646 B = 0.002206 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.364383 B =12688.430466 C =13841.269439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.033 4.033 3 C -0.140 4.140 4 C -0.021 4.021 5 C -0.677 4.677 6 S 2.697 3.303 7 O -0.957 6.957 8 O -0.962 6.962 9 N -1.114 6.114 10 C 0.113 3.887 11 C -0.104 4.104 12 C -0.130 4.130 13 C 0.439 3.561 14 O -0.598 6.598 15 N -0.562 5.562 16 C -0.301 4.301 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.901 5.901 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.269 1.269 24 C -0.017 4.017 25 C -0.108 4.108 26 C -0.120 4.120 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.131 0.869 31 H 0.140 0.860 32 H 0.421 0.579 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.393 0.607 40 H 0.272 0.728 41 H 0.141 0.859 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.817 7.557 -19.112 25.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.033 4.033 3 C -0.158 4.158 4 C -0.040 4.040 5 C -0.764 4.764 6 S 2.786 3.214 7 O -0.946 6.946 8 O -0.953 6.953 9 N -0.875 5.875 10 C -0.013 4.013 11 C -0.143 4.143 12 C -0.172 4.172 13 C 0.225 3.775 14 O -0.484 6.484 15 N -0.198 5.198 16 C -0.431 4.431 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.036 4.036 25 C -0.109 4.109 26 C -0.176 4.176 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.149 0.851 31 H 0.157 0.843 32 H 0.256 0.744 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.159 0.841 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.908 7.824 -19.678 25.898 hybrid contribution -0.464 -0.132 1.262 1.352 sum -15.372 7.692 -18.416 25.192 Atomic orbital electron populations 1.21013 0.90693 1.03631 1.02968 1.20120 0.96407 0.92791 0.94025 1.21158 0.94172 0.97890 1.02622 1.20887 0.94687 0.96567 0.91874 1.30944 1.27204 0.99451 1.18791 1.01754 0.73578 0.73584 0.72437 1.93591 1.80499 1.44212 1.76340 1.93587 1.81455 1.43864 1.76351 1.55443 1.72268 1.28754 1.30998 1.21461 0.99705 0.87514 0.92574 1.21408 1.00459 0.99327 0.93122 1.21426 1.00640 0.99156 0.95962 1.19908 0.87104 0.84836 0.85625 1.90515 1.41946 1.35892 1.80033 1.41920 1.37578 1.22826 1.17470 1.19722 1.18893 1.09327 0.95149 0.87940 1.25271 0.97630 0.95343 0.99701 1.69612 1.36407 1.12164 1.36058 0.85859 0.80034 0.77396 0.81002 1.20405 1.20901 1.19406 1.20849 0.94033 0.96729 0.91995 1.19907 0.93687 0.95425 1.01901 1.20903 1.00295 0.93661 1.02780 0.90369 0.90990 0.90449 0.85075 0.84251 0.74393 0.91786 0.90140 0.90362 0.90607 0.90264 0.90089 0.77352 0.91842 0.84093 0.90819 0.90880 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.64 9.61 36.01 0.35 -0.30 16 2 C -0.03 -0.26 5.88 -104.62 -0.62 -0.88 16 3 C -0.14 -1.14 9.70 -39.58 -0.38 -1.52 16 4 C -0.02 -0.20 9.52 -39.58 -0.38 -0.57 16 5 C -0.68 -6.95 5.95 -39.58 -0.24 -7.18 16 6 S 2.70 30.66 5.74 -107.50 -0.62 30.04 16 7 O -0.96 -13.37 16.75 -57.17 -0.96 -14.33 16 8 O -0.96 -13.02 17.28 -57.17 -0.99 -14.01 16 9 N -1.11 -11.49 6.00 -10.61 -0.06 -11.55 16 10 C 0.11 1.24 6.22 -4.04 -0.03 1.21 16 11 C -0.10 -1.47 4.65 -26.73 -0.12 -1.59 16 12 C -0.13 -2.09 5.70 -27.88 -0.16 -2.25 16 13 C 0.44 10.06 7.78 -10.99 -0.09 9.98 16 14 O -0.60 -15.85 15.56 5.55 0.09 -15.76 16 15 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 16 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 17 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 20 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 C -0.02 -0.16 9.18 -39.58 -0.36 -0.53 16 25 C -0.11 -0.93 5.88 -104.63 -0.62 -1.54 16 26 C -0.12 -0.74 9.60 36.00 0.35 -0.39 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 29 H 0.08 0.34 5.94 -51.93 -0.31 0.03 16 30 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 31 H 0.14 1.13 7.62 -52.49 -0.40 0.73 16 32 H 0.42 3.84 8.65 -34.47 -0.30 3.54 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.84 7.75 -51.93 -0.40 0.44 16 35 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 36 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 40 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.14 1.23 7.62 -52.49 -0.40 0.83 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 44 H 0.07 0.36 5.94 -51.93 -0.31 0.05 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -35.65 383.42 -9.82 -45.47 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -6.17 Total: 9.74 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -2.53 Total: -13.56 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.60 Total: -49.26 kcal Atomic # 8 Polarization: -42.23 SS G_CDS: -1.86 Total: -44.09 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 30.66 SS G_CDS: -0.62 Total: 30.04 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.65 -9.82 -45.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126920697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.417 kcal (2) G-P(sol) polarization free energy of solvation -35.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds