Wall clock time and date at job start Sat Apr 11 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21286 * 120.00092 * 2 1 4 4 N 1.34776 * 119.99704 * 180.02562 * 2 1 3 5 5 C 1.39925 * 119.99800 * 184.49095 * 4 2 1 6 6 C 1.38888 * 120.07123 * 325.29089 * 5 4 2 7 7 C 1.38097 * 119.92817 * 180.02562 * 6 5 4 8 8 S 1.76197 * 119.96402 * 179.97438 * 7 6 5 9 9 O 1.42103 * 106.40472 * 336.46024 * 8 7 6 10 10 O 1.42100 * 106.40445 * 203.54129 * 8 7 6 11 11 N 1.65595 * 107.21851 * 90.00068 * 8 7 6 12 12 C 1.46502 * 120.00166 * 270.00247 * 11 8 7 13 13 C 1.46507 * 120.00086 * 89.99741 * 11 8 7 14 14 H 1.08996 * 109.46798 * 0.02562 * 13 11 8 15 15 C 1.53005 * 109.47343 * 240.00230 * 13 11 8 16 16 C 1.50696 * 109.46870 * 120.00094 * 13 11 8 17 17 H 1.08003 * 120.00521 * 0.02562 * 16 13 11 18 18 C 1.37877 * 120.00081 * 180.02562 * 16 13 11 19 19 N 1.31513 * 120.00579 * 180.02562 * 18 16 13 20 20 Si 1.86808 * 119.99731 * 0.02562 * 18 16 13 21 21 H 1.48499 * 109.46980 * 270.00137 * 20 18 16 22 22 H 1.48497 * 109.46969 * 29.99895 * 20 18 16 23 23 H 1.48499 * 109.46953 * 150.00338 * 20 18 16 24 24 C 1.38307 * 120.06966 * 0.25616 * 7 6 5 25 25 C 1.38258 * 120.14002 * 359.48165 * 24 7 6 26 26 C 1.38129 * 120.07095 * 0.52039 * 25 24 7 27 27 C 1.50700 * 120.03687 * 179.71845 * 26 25 24 28 28 H 1.09007 * 109.46946 * 239.99581 * 1 2 3 29 29 H 1.08997 * 109.47262 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47842 * 119.99169 * 1 2 3 31 31 H 0.96998 * 120.00302 * 4.48669 * 4 2 1 32 32 H 1.07995 * 120.03658 * 0.03737 * 6 5 4 33 33 H 1.09007 * 109.46696 * 269.99434 * 12 11 8 34 34 H 1.08998 * 109.47017 * 29.99511 * 12 11 8 35 35 H 1.09000 * 109.46962 * 149.99963 * 12 11 8 36 36 H 1.09003 * 109.46662 * 300.00083 * 15 13 11 37 37 H 1.08998 * 109.46917 * 59.99923 * 15 13 11 38 38 H 1.08992 * 109.46783 * 180.02562 * 15 13 11 39 39 H 0.96995 * 120.00279 * 180.02562 * 19 18 16 40 40 H 1.07998 * 119.92564 * 179.72828 * 24 7 6 41 41 H 1.07997 * 119.96249 * 180.23172 * 25 24 7 42 42 H 1.08992 * 109.47525 * 270.02267 * 27 26 25 43 43 H 1.09000 * 109.47032 * 30.01945 * 27 26 25 44 44 H 1.08998 * 109.47204 * 150.01561 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5768 -1.1692 0.0944 6 6 4.3163 -0.1557 -0.5016 7 6 5.6939 -0.1608 -0.4066 8 16 6.6330 1.1240 -1.1628 9 8 5.8223 1.6552 -2.2020 10 8 7.9325 0.5938 -1.3850 11 7 6.8055 2.3302 -0.0415 12 6 5.8107 3.4025 0.0399 13 6 7.9530 2.3250 0.8694 14 1 8.5789 1.4574 0.6602 15 6 7.4564 2.2595 2.3151 16 6 8.7575 3.5837 0.6710 17 1 8.4451 4.3148 -0.0600 18 6 9.8924 3.8022 1.4228 19 7 10.5942 4.9009 1.2502 20 14 10.4332 2.5375 2.6868 21 1 9.8063 2.8476 3.9968 22 1 10.0118 1.1840 2.2444 23 1 11.9114 2.5756 2.8240 24 6 6.3377 -1.1765 0.2767 25 6 5.6042 -2.1839 0.8756 26 6 4.2259 -2.1845 0.7842 27 6 3.4274 -3.2863 1.4319 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3633 1.0276 0.0005 30 1 -0.3635 -0.5137 -0.8900 31 1 1.6980 -2.0059 -0.0666 32 1 3.8144 0.6355 -1.0386 33 1 6.1042 4.2211 -0.6174 34 1 4.8379 3.0198 -0.2686 35 1 5.7499 3.7646 1.0662 36 1 6.8307 3.1273 2.5239 37 1 6.8745 1.3491 2.4585 38 1 8.3101 2.2561 2.9927 39 1 11.3928 5.0544 1.7788 40 1 7.4155 -1.1806 0.3458 41 1 6.1096 -2.9736 1.4116 42 1 3.2930 -4.1029 0.7226 43 1 3.9591 -3.6521 2.3104 44 1 2.4529 -2.9010 1.7314 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128134350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:10 Heat of formation + Delta-G solvation = -97.937533 kcal Electronic energy + Delta-G solvation = -28680.634286 eV Core-core repulsion = 24724.511819 eV Total energy + Delta-G solvation = -3956.122467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.74681 -39.70700 -38.46911 -38.12964 -36.98978 -36.06643 -34.56172 -33.85556 -31.97889 -31.83074 -29.77666 -28.11387 -27.42156 -26.98636 -24.37925 -23.10840 -22.54571 -21.63661 -20.29790 -19.27287 -19.01880 -18.23770 -18.09471 -17.40532 -17.29313 -16.88707 -16.41813 -16.35383 -15.77650 -15.36243 -15.15141 -15.09145 -14.80395 -14.64649 -14.52383 -14.19756 -13.88398 -13.63447 -13.51396 -13.37464 -13.29465 -13.26925 -13.21079 -13.17371 -13.05937 -12.96832 -12.81007 -12.54161 -12.28449 -12.07679 -11.97032 -11.52994 -11.45536 -11.35360 -10.98574 -10.75940 -10.15187 -9.80914 -9.32454 -8.29832 -6.35810 -0.69795 -0.29628 0.13921 1.30498 1.39090 1.48229 1.48774 1.93484 2.00996 2.32437 2.45812 2.74752 3.04006 3.22095 3.67998 3.74808 3.81654 3.92161 4.02204 4.21813 4.32697 4.40532 4.49255 4.57893 4.62453 4.64563 4.65872 4.67664 4.70454 4.80296 4.81906 4.90518 5.01230 5.06075 5.11055 5.12302 5.18385 5.24986 5.31956 5.47582 5.55040 5.77530 5.82931 6.33030 6.36391 6.67802 7.09343 7.28423 8.87042 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015140 B = 0.003998 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.945887 B = 7002.403427 C = 7481.606108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.496 3.504 3 O -0.576 6.576 4 N -0.657 5.657 5 C 0.112 3.888 6 C -0.042 4.042 7 C -0.668 4.668 8 S 2.686 3.314 9 O -0.992 6.992 10 O -0.987 6.987 11 N -0.983 5.983 12 C 0.107 3.893 13 C 0.240 3.760 14 H 0.052 0.948 15 C -0.158 4.158 16 C -0.529 4.529 17 H 0.039 0.961 18 C 0.016 3.984 19 N -0.944 5.944 20 Si 0.940 3.060 21 H -0.253 1.253 22 H -0.242 1.242 23 H -0.295 1.295 24 C -0.045 4.045 25 C -0.118 4.118 26 C -0.046 4.046 27 C -0.119 4.119 28 H 0.122 0.878 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.433 0.567 32 H 0.132 0.868 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.268 0.732 40 H 0.139 0.861 41 H 0.173 0.827 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.571 -22.457 4.052 32.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.287 3.713 3 O -0.454 6.454 4 N -0.305 5.305 5 C 0.016 3.984 6 C -0.063 4.063 7 C -0.759 4.759 8 S 2.782 3.218 9 O -0.982 6.982 10 O -0.977 6.977 11 N -0.821 5.821 12 C -0.039 4.039 13 C 0.135 3.865 14 H 0.070 0.930 15 C -0.217 4.217 16 C -0.569 4.569 17 H 0.057 0.943 18 C -0.182 4.182 19 N -0.584 5.584 20 Si 0.765 3.235 21 H -0.178 1.178 22 H -0.166 1.166 23 H -0.223 1.223 24 C -0.066 4.066 25 C -0.137 4.137 26 C -0.049 4.049 27 C -0.175 4.175 28 H 0.140 0.860 29 H 0.108 0.892 30 H 0.137 0.863 31 H 0.274 0.726 32 H 0.149 0.851 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.157 0.843 41 H 0.191 0.809 42 H 0.121 0.879 43 H 0.111 0.889 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.787 -21.563 3.244 31.540 hybrid contribution 0.490 0.036 0.486 0.691 sum -22.297 -21.527 3.730 31.217 Atomic orbital electron populations 1.21963 0.86106 1.06675 1.07215 1.22140 0.93044 0.82389 0.73700 1.90779 1.71826 1.33328 1.49503 1.43489 1.03406 1.11025 1.72630 1.17681 0.84299 0.97068 0.99306 1.20922 0.91274 0.98842 0.95288 1.30545 1.06829 1.18714 1.19766 1.01637 0.73023 0.73503 0.73625 1.93482 1.71015 1.79282 1.54463 1.93507 1.39159 1.80255 1.84784 1.57060 1.33540 1.37649 1.53879 1.21315 0.89282 0.89799 1.03468 1.18949 0.83137 0.97151 0.87265 0.93008 1.22384 1.00707 1.02055 0.96560 1.21411 1.09322 1.04680 1.21456 0.94291 1.25804 0.95820 0.97331 0.99260 1.70030 1.17898 1.27808 1.42647 0.86000 0.76574 0.80950 0.79971 1.17792 1.16603 1.22263 1.21151 1.00960 0.92031 0.92424 1.21414 0.93099 0.99078 1.00133 1.20474 0.94583 0.96143 0.93697 1.21010 0.99812 0.95102 1.01597 0.85967 0.89186 0.86265 0.72600 0.85056 0.94140 0.90857 0.89834 0.91693 0.91601 0.93333 0.92289 0.84283 0.80935 0.87914 0.88946 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 10.32 71.23 0.74 -0.33 16 2 C 0.50 9.14 7.78 87.66 0.68 9.82 16 3 O -0.58 -17.79 14.50 -3.05 -0.04 -17.83 16 4 N -0.66 -9.55 4.75 -303.51 -1.44 -11.00 16 5 C 0.11 2.53 6.29 38.15 0.24 2.77 16 6 C -0.04 -1.33 8.17 22.39 0.18 -1.15 16 7 C -0.67 -22.99 5.97 22.25 0.13 -22.85 16 8 S 2.69 116.24 5.64 -56.49 -0.32 115.92 16 9 O -0.99 -46.17 16.35 -128.00 -2.09 -48.26 16 10 O -0.99 -47.53 15.84 -128.00 -2.03 -49.56 16 11 N -0.98 -44.23 3.06 -520.42 -1.59 -45.82 16 12 C 0.11 4.38 9.53 127.77 1.22 5.60 16 13 C 0.24 11.73 2.21 44.24 0.10 11.83 16 14 H 0.05 2.59 5.97 -2.39 -0.01 2.58 16 15 C -0.16 -6.54 8.65 71.98 0.62 -5.92 16 16 C -0.53 -31.23 8.95 25.60 0.23 -31.00 16 17 H 0.04 2.56 7.89 -2.91 -0.02 2.54 16 18 C 0.02 0.95 5.45 84.65 0.46 1.41 16 19 N -0.94 -59.94 13.96 21.45 0.30 -59.64 16 20 Si 0.94 44.29 24.38 68.60 1.67 45.96 16 21 H -0.25 -10.88 6.87 99.48 0.68 -10.20 16 22 H -0.24 -10.53 6.53 99.48 0.65 -9.88 16 23 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 24 C -0.05 -1.31 9.52 22.29 0.21 -1.09 16 25 C -0.12 -2.33 9.70 22.25 0.22 -2.11 16 26 C -0.05 -0.79 5.90 -19.74 -0.12 -0.90 16 27 C -0.12 -0.74 9.47 71.24 0.67 -0.07 16 28 H 0.12 0.09 8.14 -2.38 -0.02 0.07 16 29 H 0.09 0.82 8.12 -2.39 -0.02 0.80 16 30 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.43 2.02 7.85 -92.71 -0.73 1.29 16 32 H 0.13 4.79 5.76 -2.91 -0.02 4.78 16 33 H 0.04 1.73 8.14 -2.38 -0.02 1.72 16 34 H 0.07 2.73 7.79 -2.39 -0.02 2.71 16 35 H 0.08 3.19 6.43 -2.39 -0.02 3.18 16 36 H 0.06 2.60 6.66 -2.39 -0.02 2.59 16 37 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.05 2.01 3.27 -2.39 -0.01 2.00 16 39 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 40 H 0.14 4.00 7.61 -2.91 -0.02 3.98 16 41 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.09 0.41 8.09 -2.39 -0.02 0.39 16 44 H 0.08 0.31 7.17 -2.39 -0.02 0.29 16 Total: -1.00 -89.11 366.57 0.27 -88.84 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.23 Total: 15.38 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 5.59 Total: -34.00 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -2.74 Total: -116.46 kcal Atomic # 8 Polarization: -111.49 SS G_CDS: -4.16 Total: -115.65 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.67 Total: 45.96 kcal Atomic # 16 Polarization: 116.24 SS G_CDS: -0.32 Total: 115.92 kcal Total: -89.11 0.27 -88.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128134350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.098 kcal (2) G-P(sol) polarization free energy of solvation -89.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds