Wall clock time and date at job start Sat Apr 11 2020 05:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37978 * 119.93266 * 2 1 4 4 C 1.39554 * 119.85768 * 179.97438 * 3 2 1 5 5 C 1.47842 * 120.14461 * 179.97438 * 4 3 2 6 6 O 1.21552 * 120.00516 * 221.43962 * 5 4 3 7 7 N 1.34783 * 119.99898 * 41.44821 * 5 4 3 8 8 C 1.46506 * 119.99800 * 355.46670 * 7 5 4 9 9 C 1.46500 * 120.00005 * 175.46708 * 7 5 4 10 10 H 1.08998 * 109.46968 * 359.97438 * 9 7 5 11 11 C 1.53001 * 109.47125 * 239.99975 * 9 7 5 12 12 C 1.50705 * 109.47025 * 119.99865 * 9 7 5 13 13 H 1.07998 * 119.99670 * 0.02562 * 12 9 7 14 14 C 1.37872 * 119.99886 * 179.97438 * 12 9 7 15 15 N 1.31507 * 120.00339 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 119.99743 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.46904 * 179.97438 * 16 14 12 18 18 H 1.48495 * 109.47453 * 299.99979 * 16 14 12 19 19 H 1.48504 * 109.47211 * 60.00104 * 16 14 12 20 20 C 1.39590 * 119.71147 * 0.25364 * 4 3 2 21 21 C 1.37939 * 119.84962 * 359.46846 * 20 4 3 22 22 S 1.76206 * 119.92594 * 180.27522 * 21 20 4 23 23 N 1.65603 * 107.21670 * 115.25865 * 22 21 20 24 24 O 1.42098 * 106.40231 * 228.79432 * 22 21 20 25 25 O 1.42099 * 106.40496 * 1.71959 * 22 21 20 26 26 C 1.38339 * 119.92627 * 179.97438 * 2 1 3 27 27 C 1.50698 * 119.85546 * 359.97438 * 26 2 1 28 28 H 1.08999 * 109.46659 * 90.00390 * 1 2 3 29 29 H 1.08997 * 109.47175 * 210.00294 * 1 2 3 30 30 H 1.08995 * 109.46967 * 330.00423 * 1 2 3 31 31 H 1.08005 * 120.06939 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.46912 * 275.17678 * 8 7 5 33 33 H 1.08998 * 109.46842 * 35.17730 * 8 7 5 34 34 H 1.08996 * 109.46690 * 155.17692 * 8 7 5 35 35 H 1.09004 * 109.47106 * 180.02562 * 11 9 7 36 36 H 1.09002 * 109.46999 * 300.00321 * 11 9 7 37 37 H 1.08998 * 109.47123 * 60.00070 * 11 9 7 38 38 H 0.97002 * 120.00513 * 179.97438 * 15 14 12 39 39 H 1.08005 * 120.07793 * 179.72550 * 20 4 3 40 40 H 0.96997 * 120.00357 * 150.00118 * 23 22 21 41 41 H 0.97000 * 119.99942 * 329.99586 * 23 22 21 42 42 H 1.08996 * 109.47189 * 90.00059 * 27 26 2 43 43 H 1.09005 * 109.47308 * 210.00218 * 27 26 2 44 44 H 1.09006 * 109.46639 * 329.99638 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1957 0.0000 4 6 3.5910 1.1939 0.0005 5 6 4.3351 2.4714 0.0000 6 8 5.3232 2.5990 -0.6964 7 7 3.9180 3.4946 0.7718 8 6 2.6729 3.3764 1.5347 9 6 4.7096 4.7250 0.8478 10 1 5.5941 4.6274 0.2182 11 6 5.1394 4.9663 2.2962 12 6 3.8782 5.8876 0.3701 13 1 2.8616 5.7261 0.0431 14 6 4.4149 7.1574 0.3516 15 7 5.6523 7.3542 0.7512 16 14 3.3841 8.5985 -0.2399 17 1 4.1862 9.8459 -0.1618 18 1 2.9669 8.3649 -1.6457 19 1 2.1794 8.7307 0.6184 20 6 4.2813 -0.0194 -0.0043 21 6 3.5810 -1.2077 0.0015 22 16 4.4503 -2.7404 0.0028 23 7 4.1101 -3.4957 1.4367 24 8 3.8635 -3.5354 -1.0185 25 8 5.8336 -2.4172 0.0379 26 6 2.1972 -1.1989 0.0005 27 6 1.4387 -2.5011 0.0017 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.6555 2.1311 0.0004 32 1 1.8299 3.6461 0.8985 33 1 2.5540 2.3491 1.8792 34 1 2.7084 4.0459 2.3941 35 1 5.7280 5.8820 2.3528 36 1 4.2552 5.0636 2.9261 37 1 5.7408 4.1254 2.6417 38 1 6.0301 8.2475 0.7378 39 1 5.3613 -0.0277 -0.0084 40 1 4.1015 -4.4645 1.4846 41 1 3.9195 -2.9694 2.2289 42 1 1.2554 -2.8158 -1.0256 43 1 2.0251 -3.2627 0.5159 44 1 0.4870 -2.3668 0.5159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155809003.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:21 Heat of formation + Delta-G solvation = -77.980345 kcal Electronic energy + Delta-G solvation = -28110.140611 eV Core-core repulsion = 24154.883553 eV Total energy + Delta-G solvation = -3955.257058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.37436 -38.59365 -37.36243 -36.00196 -35.49848 -33.92997 -33.40792 -33.14597 -32.34228 -29.62423 -27.92002 -27.03236 -26.23877 -25.25900 -23.19121 -22.78099 -20.56438 -19.68880 -18.92768 -17.92568 -17.62188 -17.02954 -16.58618 -16.14466 -15.83402 -15.76103 -15.31179 -15.00865 -14.73434 -14.38608 -14.15261 -13.59260 -13.29259 -13.10462 -13.03373 -12.75989 -12.62919 -12.42343 -12.34561 -12.24431 -12.16920 -12.12091 -12.02433 -11.64370 -11.50413 -11.46089 -11.11724 -11.02223 -10.85955 -10.77560 -10.56994 -10.32615 -10.21789 -9.42808 -9.26257 -9.13537 -8.78551 -8.47384 -7.71328 -6.11475 -4.20112 0.17873 0.56268 0.94392 2.77454 3.02935 3.24691 3.30480 3.31723 3.39762 3.65964 3.78725 4.28286 4.35641 4.41030 4.55705 4.70399 4.74151 4.98718 5.10014 5.19261 5.20097 5.29354 5.42404 5.44937 5.52508 5.59626 5.65273 5.68472 5.78720 5.88151 5.89728 6.11918 6.17155 6.18540 6.57827 6.70272 6.71368 6.76010 6.98060 7.32956 7.43593 7.65101 7.94673 8.12495 8.39741 8.74518 8.91160 9.46324 10.93877 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.003037 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.828664 B = 9217.624952 C =10044.194423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.116 4.116 3 C -0.032 4.032 4 C -0.134 4.134 5 C 0.543 3.457 6 O -0.538 6.538 7 N -0.584 5.584 8 C 0.081 3.919 9 C 0.257 3.743 10 H 0.065 0.935 11 C -0.148 4.148 12 C -0.528 4.528 13 H 0.058 0.942 14 C 0.066 3.934 15 N -0.887 5.887 16 Si 0.900 3.100 17 H -0.286 1.286 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.026 3.974 21 C -0.684 4.684 22 S 2.705 3.295 23 N -1.250 6.250 24 O -0.960 6.960 25 O -0.959 6.959 26 C 0.025 3.975 27 C -0.147 4.147 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.145 0.855 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.031 0.969 37 H 0.012 0.988 38 H 0.265 0.735 39 H 0.152 0.848 40 H 0.420 0.580 41 H 0.418 0.582 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.605 -20.628 5.025 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.117 4.117 3 C -0.050 4.050 4 C -0.138 4.138 5 C 0.329 3.671 6 O -0.417 6.417 7 N -0.314 5.314 8 C -0.063 4.063 9 C 0.158 3.842 10 H 0.083 0.917 11 C -0.206 4.206 12 C -0.566 4.566 13 H 0.077 0.923 14 C -0.137 4.137 15 N -0.525 5.525 16 Si 0.727 3.273 17 H -0.211 1.211 18 H -0.202 1.202 19 H -0.202 1.202 20 C 0.006 3.994 21 C -0.771 4.771 22 S 2.793 3.207 23 N -0.924 5.924 24 O -0.950 6.950 25 O -0.948 6.948 26 C 0.024 3.976 27 C -0.204 4.204 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.163 0.837 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.050 0.950 37 H 0.031 0.969 38 H 0.075 0.925 39 H 0.170 0.830 40 H 0.250 0.750 41 H 0.245 0.755 42 H 0.116 0.884 43 H 0.090 0.910 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.338 -20.590 3.851 23.359 hybrid contribution -1.162 1.394 0.361 1.850 sum -11.500 -19.196 4.212 22.770 Atomic orbital electron populations 1.20875 0.90140 1.03306 1.02936 1.19787 0.96621 0.92109 1.03215 1.21910 0.93277 0.98816 0.91034 1.20324 0.94050 0.94734 1.04691 1.18146 0.84641 0.83198 0.81105 1.90775 1.27104 1.82518 1.41269 1.48200 1.23510 1.16211 1.43468 1.21841 0.86831 1.00690 0.96897 1.19024 0.91968 0.78760 0.94491 0.91674 1.22115 0.99633 1.01639 0.97224 1.21241 0.99486 0.91701 1.44203 0.92334 1.24887 0.95064 0.98761 0.94995 1.69857 1.13506 1.22502 1.46606 0.86536 0.79982 0.81380 0.79357 1.21121 1.20222 1.20242 1.20992 1.00891 0.89496 0.88068 1.30352 1.05122 1.19377 1.22254 1.01517 0.73539 0.73031 0.72572 1.53199 1.91711 1.18672 1.28790 1.93608 1.78418 1.67943 1.55024 1.93622 1.31184 1.84215 1.85763 1.19474 0.91134 0.95834 0.91175 1.21364 1.01156 0.93022 1.04834 0.90715 0.90839 0.90992 0.83699 0.93181 0.92720 0.90288 0.88596 0.95041 0.96852 0.92530 0.82998 0.74985 0.75452 0.88435 0.91014 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.60 36.01 0.35 -0.50 16 2 C -0.12 -1.25 5.87 -104.68 -0.61 -1.86 16 3 C -0.03 -0.42 7.27 -39.19 -0.29 -0.71 16 4 C -0.13 -2.22 5.16 -104.97 -0.54 -2.76 16 5 C 0.54 11.57 7.33 -12.33 -0.09 11.48 16 6 O -0.54 -13.74 16.28 5.32 0.09 -13.66 16 7 N -0.58 -12.31 2.75 -176.37 -0.49 -12.79 16 8 C 0.08 1.30 8.13 59.85 0.49 1.79 16 9 C 0.26 6.50 2.63 -69.08 -0.18 6.32 16 10 H 0.07 1.92 6.91 -51.93 -0.36 1.56 16 11 C -0.15 -3.46 8.96 37.16 0.33 -3.13 16 12 C -0.53 -14.05 8.37 -34.44 -0.29 -14.33 16 13 H 0.06 1.52 7.65 -52.49 -0.40 1.12 16 14 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 15 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16 16 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 C 0.03 0.39 9.15 -39.19 -0.36 0.03 16 21 C -0.68 -8.35 5.90 -39.64 -0.23 -8.58 16 22 S 2.71 29.29 5.47 -107.50 -0.59 28.70 16 23 N -1.25 -7.20 8.15 60.35 0.49 -6.71 16 24 O -0.96 -12.20 16.44 -57.17 -0.94 -13.14 16 25 O -0.96 -14.13 16.96 -57.17 -0.97 -15.10 16 26 C 0.03 0.27 5.88 -104.53 -0.61 -0.35 16 27 C -0.15 -1.10 8.31 36.00 0.30 -0.81 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.39 5.93 -51.93 -0.31 0.09 16 30 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.15 1.78 5.52 -52.48 -0.29 1.49 16 32 H 0.05 0.73 6.85 -51.93 -0.36 0.38 16 33 H 0.05 0.72 5.99 -51.93 -0.31 0.41 16 34 H 0.08 1.28 6.44 -51.93 -0.33 0.95 16 35 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 36 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 37 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.15 2.45 7.33 -52.48 -0.38 2.07 16 40 H 0.42 1.49 8.96 -34.48 -0.31 1.18 16 41 H 0.42 1.60 8.96 -34.47 -0.31 1.29 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.45 5.30 -51.93 -0.28 0.17 16 44 H 0.09 0.44 5.93 -51.93 -0.31 0.13 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -36.42 361.41 -8.62 -45.04 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.43 Total: 2.40 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -1.84 Total: -11.73 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.63 Total: -43.72 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -1.82 Total: -41.90 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 29.29 SS G_CDS: -0.59 Total: 28.70 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.42 -8.62 -45.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155809003.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.937 kcal (2) G-P(sol) polarization free energy of solvation -36.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds