Wall clock time and date at job start Sat Apr 11 2020 05:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37978 * 119.93266 * 2 1 4 4 C 1.39554 * 119.85768 * 179.97438 * 3 2 1 5 5 C 1.47842 * 120.14461 * 179.97438 * 4 3 2 6 6 O 1.21552 * 120.00516 * 221.43962 * 5 4 3 7 7 N 1.34783 * 119.99898 * 41.44821 * 5 4 3 8 8 C 1.46506 * 119.99800 * 355.46670 * 7 5 4 9 9 C 1.46500 * 120.00005 * 175.46708 * 7 5 4 10 10 H 1.08998 * 109.46968 * 359.97438 * 9 7 5 11 11 C 1.53001 * 109.47125 * 239.99975 * 9 7 5 12 12 C 1.50705 * 109.47025 * 119.99865 * 9 7 5 13 13 H 1.07998 * 119.99670 * 0.02562 * 12 9 7 14 14 C 1.37872 * 119.99886 * 179.97438 * 12 9 7 15 15 N 1.31507 * 120.00339 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 119.99743 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.46904 * 179.97438 * 16 14 12 18 18 H 1.48495 * 109.47453 * 299.99979 * 16 14 12 19 19 H 1.48504 * 109.47211 * 60.00104 * 16 14 12 20 20 C 1.39590 * 119.71147 * 0.25364 * 4 3 2 21 21 C 1.37939 * 119.84962 * 359.46846 * 20 4 3 22 22 S 1.76206 * 119.92594 * 180.27522 * 21 20 4 23 23 N 1.65603 * 107.21670 * 115.25865 * 22 21 20 24 24 O 1.42098 * 106.40231 * 228.79432 * 22 21 20 25 25 O 1.42099 * 106.40496 * 1.71959 * 22 21 20 26 26 C 1.38339 * 119.92627 * 179.97438 * 2 1 3 27 27 C 1.50698 * 119.85546 * 359.97438 * 26 2 1 28 28 H 1.08999 * 109.46659 * 90.00390 * 1 2 3 29 29 H 1.08997 * 109.47175 * 210.00294 * 1 2 3 30 30 H 1.08995 * 109.46967 * 330.00423 * 1 2 3 31 31 H 1.08005 * 120.06939 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.46912 * 275.17678 * 8 7 5 33 33 H 1.08998 * 109.46842 * 35.17730 * 8 7 5 34 34 H 1.08996 * 109.46690 * 155.17692 * 8 7 5 35 35 H 1.09004 * 109.47106 * 180.02562 * 11 9 7 36 36 H 1.09002 * 109.46999 * 300.00321 * 11 9 7 37 37 H 1.08998 * 109.47123 * 60.00070 * 11 9 7 38 38 H 0.97002 * 120.00513 * 179.97438 * 15 14 12 39 39 H 1.08005 * 120.07793 * 179.72550 * 20 4 3 40 40 H 0.96997 * 120.00357 * 150.00118 * 23 22 21 41 41 H 0.97000 * 119.99942 * 329.99586 * 23 22 21 42 42 H 1.08996 * 109.47189 * 90.00059 * 27 26 2 43 43 H 1.09005 * 109.47308 * 210.00218 * 27 26 2 44 44 H 1.09006 * 109.46639 * 329.99638 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1957 0.0000 4 6 3.5910 1.1939 0.0005 5 6 4.3351 2.4714 0.0000 6 8 5.3232 2.5990 -0.6964 7 7 3.9180 3.4946 0.7718 8 6 2.6729 3.3764 1.5347 9 6 4.7096 4.7250 0.8478 10 1 5.5941 4.6274 0.2182 11 6 5.1394 4.9663 2.2962 12 6 3.8782 5.8876 0.3701 13 1 2.8616 5.7261 0.0431 14 6 4.4149 7.1574 0.3516 15 7 5.6523 7.3542 0.7512 16 14 3.3841 8.5985 -0.2399 17 1 4.1862 9.8459 -0.1618 18 1 2.9669 8.3649 -1.6457 19 1 2.1794 8.7307 0.6184 20 6 4.2813 -0.0194 -0.0043 21 6 3.5810 -1.2077 0.0015 22 16 4.4503 -2.7404 0.0028 23 7 4.1101 -3.4957 1.4367 24 8 3.8635 -3.5354 -1.0185 25 8 5.8336 -2.4172 0.0379 26 6 2.1972 -1.1989 0.0005 27 6 1.4387 -2.5011 0.0017 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.6555 2.1311 0.0004 32 1 1.8299 3.6461 0.8985 33 1 2.5540 2.3491 1.8792 34 1 2.7084 4.0459 2.3941 35 1 5.7280 5.8820 2.3528 36 1 4.2552 5.0636 2.9261 37 1 5.7408 4.1254 2.6417 38 1 6.0301 8.2475 0.7378 39 1 5.3613 -0.0277 -0.0084 40 1 4.1015 -4.4645 1.4846 41 1 3.9195 -2.9694 2.2289 42 1 1.2554 -2.8158 -1.0256 43 1 2.0251 -3.2627 0.5159 44 1 0.4870 -2.3668 0.5159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155809003.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:20 Heat of formation + Delta-G solvation = -106.640202 kcal Electronic energy + Delta-G solvation = -28111.383396 eV Core-core repulsion = 24154.883553 eV Total energy + Delta-G solvation = -3956.499843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.62328 -39.97646 -38.36684 -37.29877 -37.00079 -35.18531 -34.50988 -34.13158 -33.52454 -31.35839 -28.86119 -28.12693 -27.48900 -27.27423 -24.26932 -24.07828 -22.03564 -20.56616 -20.29204 -19.02785 -18.50452 -18.40582 -18.11132 -17.46515 -17.09990 -16.82112 -16.70090 -16.35985 -15.98582 -15.68794 -15.27700 -14.85381 -14.54302 -14.39822 -14.21476 -13.76570 -13.60188 -13.59289 -13.41047 -13.27500 -13.23276 -13.20859 -13.13745 -12.96180 -12.91210 -12.82926 -12.73380 -12.60664 -12.28754 -12.21355 -12.15331 -11.89077 -11.27277 -11.21986 -10.89143 -10.55092 -10.36611 -9.80096 -9.43650 -8.16855 -6.34260 -0.71196 -0.43994 -0.12978 1.40555 1.43567 1.50736 1.58864 2.08427 2.14797 2.32272 2.45480 2.65681 3.11294 3.32353 3.47516 3.63842 3.70036 3.86133 4.11079 4.18000 4.32457 4.45133 4.55221 4.59920 4.65464 4.69213 4.72651 4.82566 4.84024 4.92281 4.95019 4.99915 5.09769 5.13705 5.23424 5.26763 5.35265 5.41112 5.54765 5.61383 5.71038 5.97322 6.10913 6.35466 6.65672 6.72252 7.17668 7.38914 8.87711 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.003037 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.828664 B = 9217.624952 C =10044.194423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.105 4.105 3 C -0.033 4.033 4 C -0.157 4.157 5 C 0.534 3.466 6 O -0.600 6.600 7 N -0.588 5.588 8 C 0.077 3.923 9 C 0.260 3.740 10 H 0.007 0.993 11 C -0.133 4.133 12 C -0.540 4.540 13 H 0.064 0.936 14 C 0.015 3.985 15 N -0.918 5.918 16 Si 0.967 3.033 17 H -0.285 1.285 18 H -0.278 1.278 19 H -0.258 1.258 20 C 0.005 3.995 21 C -0.682 4.682 22 S 2.728 3.272 23 N -1.225 6.225 24 O -0.976 6.976 25 O -1.004 7.004 26 C 0.037 3.963 27 C -0.154 4.154 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.155 0.845 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.019 0.981 38 H 0.265 0.735 39 H 0.127 0.873 40 H 0.435 0.565 41 H 0.431 0.569 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.105 -22.550 6.182 28.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.106 4.106 3 C -0.051 4.051 4 C -0.161 4.161 5 C 0.323 3.677 6 O -0.484 6.484 7 N -0.317 5.317 8 C -0.065 4.065 9 C 0.158 3.842 10 H 0.025 0.975 11 C -0.191 4.191 12 C -0.578 4.578 13 H 0.082 0.918 14 C -0.185 4.185 15 N -0.557 5.557 16 Si 0.792 3.208 17 H -0.210 1.210 18 H -0.204 1.204 19 H -0.183 1.183 20 C -0.015 4.015 21 C -0.769 4.769 22 S 2.815 3.185 23 N -0.907 5.907 24 O -0.966 6.966 25 O -0.993 6.993 26 C 0.035 3.965 27 C -0.210 4.210 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.102 0.898 31 H 0.173 0.827 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.145 0.855 40 H 0.269 0.731 41 H 0.262 0.738 42 H 0.119 0.881 43 H 0.103 0.897 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.890 -22.534 5.050 27.478 hybrid contribution 0.203 1.845 0.007 1.856 sum -14.687 -20.689 5.057 25.871 Atomic orbital electron populations 1.21034 0.86847 1.05376 1.04105 1.20212 0.98714 0.90845 1.00839 1.22009 0.91514 1.00571 0.91053 1.19904 0.95346 0.92224 1.08620 1.18941 0.84148 0.84691 0.79880 1.90720 1.30036 1.83786 1.43810 1.48168 1.24729 1.14891 1.43901 1.22134 0.84870 1.02868 0.96581 1.18641 0.90704 0.80570 0.94299 0.97508 1.21897 1.00159 1.00563 0.96525 1.21514 0.99735 0.92288 1.44296 0.91798 1.25765 0.96144 1.01553 0.95030 1.70015 1.15131 1.23025 1.47498 0.85472 0.78823 0.77750 0.78746 1.21010 1.20381 1.18281 1.20823 1.00078 0.90587 0.90032 1.30451 1.06196 1.18401 1.21855 1.00636 0.72419 0.72255 0.73171 1.52671 1.91102 1.19467 1.27439 1.93582 1.78373 1.67984 1.56626 1.93581 1.34153 1.84801 1.86734 1.19985 0.90404 0.97646 0.88423 1.21583 1.02541 0.91188 1.05681 0.89797 0.88043 0.89803 0.82740 0.91294 0.89442 0.90344 0.91110 0.92861 0.96215 0.92565 0.85501 0.73134 0.73836 0.88126 0.89723 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 9.60 71.24 0.68 -0.40 16 2 C -0.11 -1.88 5.87 -19.90 -0.12 -1.99 16 3 C -0.03 -0.82 7.27 22.53 0.16 -0.65 16 4 C -0.16 -5.34 5.16 -20.09 -0.10 -5.44 16 5 C 0.53 24.22 7.33 86.78 0.64 24.86 16 6 O -0.60 -33.63 16.28 -3.88 -0.06 -33.69 16 7 N -0.59 -25.64 2.75 -830.19 -2.29 -27.92 16 8 C 0.08 2.38 8.13 127.77 1.04 3.41 16 9 C 0.26 13.79 2.63 44.25 0.12 13.90 16 10 H 0.01 0.45 6.91 -2.39 -0.02 0.43 16 11 C -0.13 -6.46 8.96 71.98 0.64 -5.81 16 12 C -0.54 -29.38 8.37 25.60 0.21 -29.16 16 13 H 0.06 3.32 7.65 -2.91 -0.02 3.30 16 14 C 0.01 0.81 5.30 84.65 0.45 1.26 16 15 N -0.92 -53.28 11.32 21.44 0.24 -53.03 16 16 Si 0.97 42.80 29.54 68.60 2.03 44.82 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 20 C 0.01 0.16 9.15 22.53 0.21 0.37 16 21 C -0.68 -16.02 5.90 22.23 0.13 -15.89 16 22 S 2.73 56.49 5.47 -56.49 -0.31 56.18 16 23 N -1.23 -10.91 8.15 37.02 0.30 -10.60 16 24 O -0.98 -23.15 16.44 -128.00 -2.10 -25.25 16 25 O -1.00 -30.52 16.96 -128.00 -2.17 -32.69 16 26 C 0.04 0.66 5.88 -19.81 -0.12 0.54 16 27 C -0.15 -1.56 8.31 71.24 0.59 -0.97 16 28 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 0.41 5.93 -2.39 -0.01 0.39 16 30 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 31 H 0.16 3.44 5.52 -2.91 -0.02 3.42 16 32 H 0.07 1.87 6.85 -2.39 -0.02 1.85 16 33 H 0.09 2.11 5.99 -2.39 -0.01 2.10 16 34 H 0.08 2.42 6.44 -2.39 -0.02 2.41 16 35 H 0.07 3.81 6.07 -2.38 -0.01 3.79 16 36 H 0.05 2.29 6.66 -2.39 -0.02 2.27 16 37 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 38 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 39 H 0.13 4.59 7.33 -2.91 -0.02 4.57 16 40 H 0.43 1.71 8.96 -96.74 -0.87 0.84 16 41 H 0.43 2.00 8.96 -96.74 -0.87 1.13 16 42 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.08 0.66 5.30 -2.38 -0.01 0.65 16 44 H 0.12 0.43 5.93 -2.38 -0.01 0.42 16 Total: -1.00 -86.24 361.41 -0.48 -86.72 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -0.66 Total: 11.43 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 4.54 Total: -15.97 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -1.74 Total: -91.56 kcal Atomic # 8 Polarization: -87.29 SS G_CDS: -4.34 Total: -91.63 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 56.49 SS G_CDS: -0.31 Total: 56.18 kcal Total: -86.24 -0.48 -86.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155809003.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.917 kcal (2) G-P(sol) polarization free energy of solvation -86.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds