Wall clock time and date at job start Sat Apr 11 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38287 * 119.92491 * 2 1 4 4 C 1.38109 * 120.06576 * 180.02562 * 3 2 1 5 5 C 1.38878 * 119.92977 * 0.23040 * 4 3 2 6 6 N 1.39927 * 120.06630 * 179.72286 * 5 4 3 7 7 C 1.34778 * 120.00426 * 33.29281 * 6 5 4 8 8 O 1.21296 * 119.99695 * 5.27234 * 7 6 5 9 9 C 1.50692 * 120.00463 * 185.27084 * 7 6 5 10 10 N 1.46498 * 109.47557 * 179.97438 * 9 7 6 11 11 C 1.46501 * 119.99945 * 275.00218 * 10 9 7 12 12 S 1.65600 * 119.99854 * 94.99727 * 10 9 7 13 13 O 1.42099 * 104.27604 * 206.07113 * 12 10 9 14 14 O 1.42092 * 104.27897 * 333.93533 * 12 10 9 15 15 C 1.81402 * 104.44699 * 90.00605 * 12 10 9 16 16 C 1.53003 * 109.47122 * 179.97438 * 15 12 10 17 17 C 1.50699 * 109.46779 * 179.97438 * 16 15 12 18 18 H 1.07999 * 120.00873 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99667 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00289 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00133 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46893 * 90.00033 * 21 19 17 23 23 H 1.48501 * 109.47392 * 210.00011 * 21 19 17 24 24 H 1.48499 * 109.47307 * 330.00386 * 21 19 17 25 25 C 1.38867 * 119.85665 * 359.49527 * 5 4 3 26 26 C 1.38108 * 119.93280 * 0.50320 * 25 5 4 27 27 H 1.08997 * 109.47196 * 90.00330 * 1 2 3 28 28 H 1.09001 * 109.46970 * 210.00363 * 1 2 3 29 29 H 1.09004 * 109.47548 * 329.99737 * 1 2 3 30 30 H 1.07999 * 119.96687 * 359.97438 * 3 2 1 31 31 H 1.07999 * 120.03249 * 179.97438 * 4 3 2 32 32 H 0.96996 * 119.99827 * 213.28925 * 6 5 4 33 33 H 1.08996 * 109.47387 * 300.00010 * 9 7 6 34 34 H 1.09005 * 109.46988 * 59.99646 * 9 7 6 35 35 H 1.08999 * 109.46960 * 90.00020 * 11 10 9 36 36 H 1.08996 * 109.47018 * 209.99582 * 11 10 9 37 37 H 1.09003 * 109.47232 * 330.00040 * 11 10 9 38 38 H 1.09004 * 109.46768 * 299.99636 * 15 12 10 39 39 H 1.09001 * 109.47426 * 59.99628 * 15 12 10 40 40 H 1.08991 * 109.46893 * 299.99762 * 16 15 12 41 41 H 1.09002 * 109.47086 * 60.00121 * 16 15 12 42 42 H 0.96993 * 120.00302 * 179.97438 * 20 19 17 43 43 H 1.08003 * 120.03350 * 180.23156 * 25 5 4 44 44 H 1.07996 * 119.96656 * 179.74852 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2738 0.0000 -0.0059 6 7 5.6731 0.0002 -0.0123 7 6 6.3499 0.9747 0.6270 8 8 5.7503 1.7966 1.2874 9 6 7.8516 1.0431 0.5216 10 7 8.3444 2.1826 1.2993 11 6 8.3818 3.5182 0.6985 12 16 8.8591 1.9609 2.8576 13 8 8.6654 3.2265 3.4740 14 8 8.1485 0.8133 3.3015 15 6 10.6286 1.5931 2.7017 16 6 11.2267 1.3662 4.0916 17 6 12.6966 1.0601 3.9620 18 1 13.1582 1.0307 2.9860 19 6 13.4525 0.8185 5.0895 20 7 12.8906 0.8548 6.2781 21 14 15.2746 0.4397 4.9291 22 1 16.0499 1.7052 4.9831 23 1 15.6959 -0.4469 6.0434 24 1 15.5266 -0.2401 3.6331 25 6 3.5780 -1.2017 -0.0001 26 6 2.1969 -1.1984 0.0004 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 1.6551 2.1328 -0.0004 31 1 4.1162 2.1382 -0.0010 32 1 6.1560 -0.7011 -0.4769 33 1 8.2855 0.1222 0.9109 34 1 8.1372 1.1659 -0.5232 35 1 7.4382 4.0292 0.8899 36 1 9.2000 4.0905 1.1356 37 1 8.5348 3.4287 -0.3770 38 1 10.7613 0.6954 2.0977 39 1 11.1332 2.4317 2.2219 40 1 11.0941 2.2641 4.6951 41 1 10.7223 0.5278 4.5718 42 1 13.4223 0.6845 7.0713 43 1 4.1163 -2.1380 -0.0005 44 1 1.6553 -2.1327 0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170887720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:23 Heat of formation + Delta-G solvation = -110.479871 kcal Electronic energy + Delta-G solvation = -26936.109961 eV Core-core repulsion = 22979.443617 eV Total energy + Delta-G solvation = -3956.666343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.57964 -39.72120 -38.23531 -37.13776 -36.83889 -36.01519 -35.89322 -33.13009 -32.65053 -31.88285 -29.88676 -27.63915 -27.29249 -25.93304 -24.00575 -23.50801 -22.62643 -21.48301 -19.99101 -19.24353 -18.72446 -18.44689 -18.14080 -17.41106 -17.02255 -16.61685 -16.50173 -16.28528 -15.88099 -15.66476 -15.28287 -15.03240 -14.71797 -14.59751 -14.47552 -14.36710 -14.05179 -13.97971 -13.72904 -13.39964 -13.21016 -13.19239 -12.97092 -12.92375 -12.77760 -12.66959 -12.55767 -12.50704 -12.24634 -12.10940 -12.03416 -11.74522 -11.44750 -11.16369 -11.03344 -10.64525 -10.03342 -9.86590 -8.95614 -8.25271 -6.39866 -0.78840 0.27378 0.45725 1.42321 1.44330 1.54154 1.55385 1.64230 2.08327 2.38975 2.84728 2.90888 3.08133 3.13589 3.54592 3.74596 3.96087 4.02838 4.04075 4.10201 4.12396 4.24067 4.41419 4.44548 4.49114 4.63072 4.67677 4.75207 4.84387 4.87457 4.90053 4.99730 5.09292 5.14540 5.24854 5.27624 5.35277 5.39510 5.47032 5.56158 5.68786 5.69967 6.05222 6.10393 6.42444 6.74545 7.12363 7.30619 8.87083 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024937 B = 0.002216 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.578512 B =12630.358316 C =12946.059578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.112 4.112 3 C -0.116 4.116 4 C -0.142 4.142 5 C 0.123 3.877 6 N -0.661 5.661 7 C 0.487 3.513 8 O -0.557 6.557 9 C 0.102 3.898 10 N -0.984 5.984 11 C 0.088 3.912 12 S 2.603 3.397 13 O -0.999 6.999 14 O -0.994 6.994 15 C -0.577 4.577 16 C 0.018 3.982 17 C -0.535 4.535 18 H 0.082 0.918 19 C -0.008 4.008 20 N -0.937 5.937 21 Si 0.977 3.023 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.253 1.253 25 C -0.144 4.144 26 C -0.106 4.106 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.132 0.868 31 H 0.113 0.887 32 H 0.431 0.569 33 H 0.133 0.867 34 H 0.173 0.827 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.153 0.847 39 H 0.147 0.853 40 H 0.002 0.998 41 H 0.006 0.994 42 H 0.267 0.733 43 H 0.150 0.850 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.478 -4.184 -22.992 29.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.112 4.112 3 C -0.134 4.134 4 C -0.162 4.162 5 C 0.029 3.971 6 N -0.309 5.309 7 C 0.274 3.726 8 O -0.434 6.434 9 C -0.027 4.027 10 N -0.821 5.821 11 C -0.056 4.056 12 S 2.701 3.299 13 O -0.989 6.989 14 O -0.984 6.984 15 C -0.710 4.710 16 C -0.021 4.021 17 C -0.574 4.574 18 H 0.100 0.900 19 C -0.206 4.206 20 N -0.576 5.576 21 Si 0.800 3.200 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.177 1.177 25 C -0.164 4.164 26 C -0.124 4.124 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.150 0.850 31 H 0.131 0.869 32 H 0.270 0.730 33 H 0.150 0.850 34 H 0.190 0.810 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.135 0.865 38 H 0.171 0.829 39 H 0.165 0.835 40 H 0.020 0.980 41 H 0.024 0.976 42 H 0.075 0.925 43 H 0.168 0.832 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.383 -3.488 -21.611 28.586 hybrid contribution 1.423 -0.205 0.321 1.473 sum -16.960 -3.693 -21.290 27.469 Atomic orbital electron populations 1.20801 0.89233 1.03437 1.03158 1.20275 0.97698 0.92816 1.00455 1.21128 0.93177 0.98876 1.00256 1.21161 0.95090 0.97456 1.02509 1.17987 0.83275 0.94528 1.01328 1.43436 1.04390 1.29448 1.53648 1.22219 0.92412 0.80435 0.77516 1.90722 1.71102 1.41477 1.40072 1.21581 0.88014 0.90867 1.02257 1.57022 1.77421 1.15187 1.32504 1.21721 1.01955 0.80723 1.01187 1.05157 0.78438 0.72982 0.73274 1.93480 1.86399 1.43980 1.75087 1.93485 1.71616 1.53255 1.80081 1.30324 1.20190 1.13243 1.07224 1.18848 0.97772 0.96120 0.89374 1.21521 0.93474 1.48369 0.94075 0.90029 1.26183 1.04601 0.94958 0.94849 1.70120 1.38567 1.50073 0.98863 0.85272 0.77925 0.78338 0.78462 1.19740 1.21103 1.17694 1.21220 0.95097 0.96711 1.03381 1.21204 0.93349 0.98618 0.99215 0.90013 0.90452 0.91471 0.85043 0.86931 0.72969 0.84956 0.80976 0.94181 0.90454 0.86529 0.82853 0.83502 0.98015 0.97600 0.92461 0.83215 0.83080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 71.24 0.71 -0.53 16 2 C -0.11 -1.95 5.88 -19.84 -0.12 -2.07 16 3 C -0.12 -2.46 9.69 22.25 0.22 -2.25 16 4 C -0.14 -3.59 8.66 22.39 0.19 -3.40 16 5 C 0.12 2.74 6.28 38.15 0.24 2.98 16 6 N -0.66 -12.31 5.34 -303.50 -1.62 -13.93 16 7 C 0.49 12.26 7.63 87.65 0.67 12.93 16 8 O -0.56 -20.08 14.11 -3.08 -0.04 -20.13 16 9 C 0.10 1.82 5.76 85.63 0.49 2.31 16 10 N -0.98 -25.36 2.61 -543.24 -1.42 -26.77 16 11 C 0.09 1.86 10.22 127.77 1.31 3.17 16 12 S 2.60 98.01 5.32 -56.49 -0.30 97.71 16 13 O -1.00 -45.68 17.09 -127.65 -2.18 -47.86 16 14 O -0.99 -43.55 16.99 -127.65 -2.17 -45.72 16 15 C -0.58 -20.87 6.12 71.98 0.44 -20.43 16 16 C 0.02 0.93 4.98 29.85 0.15 1.08 16 17 C -0.54 -29.05 9.11 25.60 0.23 -28.81 16 18 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 19 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 20 N -0.94 -57.16 13.29 21.45 0.28 -56.87 16 21 Si 0.98 42.60 29.54 68.60 2.03 44.62 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 25 C -0.14 -2.52 9.96 22.39 0.22 -2.30 16 26 C -0.11 -1.68 9.69 22.25 0.22 -1.47 16 27 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 29 H 0.07 0.74 8.08 -2.38 -0.02 0.72 16 30 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.11 3.25 6.41 -2.91 -0.02 3.23 16 32 H 0.43 3.99 8.82 -92.71 -0.82 3.17 16 33 H 0.13 1.97 7.61 -2.39 -0.02 1.95 16 34 H 0.17 1.03 7.96 -2.38 -0.02 1.01 16 35 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.60 7.79 -2.39 -0.02 1.58 16 37 H 0.12 1.31 7.94 -2.39 -0.02 1.29 16 38 H 0.15 4.46 8.14 -2.39 -0.02 4.44 16 39 H 0.15 4.53 8.14 -2.39 -0.02 4.51 16 40 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 41 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 43 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 44 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -91.11 386.83 0.21 -90.90 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.19 Total: 16.81 kcal Atomic # 6 Polarization: -44.20 SS G_CDS: 5.44 Total: -38.77 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -2.75 Total: -97.58 kcal Atomic # 8 Polarization: -109.31 SS G_CDS: -4.39 Total: -113.70 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: 98.01 SS G_CDS: -0.30 Total: 97.71 kcal Total: -91.11 0.21 -90.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170887720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.578 kcal (2) G-P(sol) polarization free energy of solvation -91.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds