Wall clock time and date at job start Sat Apr 11 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.46726 * 2 1 4 4 S 1.65599 * 120.00257 * 52.08130 * 3 2 1 5 5 O 1.42099 * 104.27781 * 181.07081 * 4 3 2 6 6 O 1.42100 * 104.27721 * 308.93074 * 4 3 2 7 7 C 1.81401 * 104.44823 * 64.99919 * 4 3 2 8 8 C 1.53001 * 109.47096 * 180.02562 * 7 4 3 9 9 C 1.52999 * 109.47223 * 179.97438 * 8 7 4 10 10 C 1.50700 * 109.47314 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99997 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99654 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00341 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99628 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47185 * 89.99462 * 14 12 10 16 16 H 1.48493 * 109.47355 * 210.00273 * 14 12 10 17 17 H 1.48505 * 109.47061 * 330.00081 * 14 12 10 18 18 C 1.50694 * 109.47158 * 119.99716 * 2 1 3 19 19 N 1.34776 * 119.99734 * 204.99973 * 18 2 1 20 20 O 1.21282 * 120.00103 * 25.00381 * 18 2 1 21 21 C 1.50694 * 109.47143 * 240.00303 * 2 1 3 22 22 C 1.38237 * 120.00195 * 95.40917 * 21 2 1 23 23 C 1.38241 * 119.99923 * 179.81004 * 22 21 2 24 24 C 1.38234 * 119.99919 * 0.40000 * 23 22 21 25 25 C 1.38232 * 119.99967 * 359.85504 * 24 23 22 26 26 C 1.38234 * 120.00207 * 359.95493 * 25 24 23 27 27 H 1.08999 * 109.47148 * 299.99675 * 1 2 3 28 28 H 1.08996 * 109.47105 * 60.00003 * 1 2 3 29 29 H 1.09005 * 109.46970 * 180.02562 * 1 2 3 30 30 H 0.97006 * 119.99985 * 232.08444 * 3 2 1 31 31 H 1.09001 * 109.47029 * 299.99767 * 7 4 3 32 32 H 1.09001 * 109.47451 * 60.00098 * 7 4 3 33 33 H 1.08993 * 109.47136 * 299.99942 * 8 7 4 34 34 H 1.08996 * 109.47249 * 60.00100 * 8 7 4 35 35 H 1.08998 * 109.47204 * 300.00644 * 9 8 7 36 36 H 1.09013 * 109.46827 * 59.99896 * 9 8 7 37 37 H 0.96995 * 119.99658 * 179.97438 * 13 12 10 38 38 H 0.96990 * 120.00603 * 0.02562 * 19 18 2 39 39 H 0.97003 * 119.99535 * 179.73299 * 19 18 2 40 40 H 1.08002 * 119.99916 * 359.97438 * 22 21 2 41 41 H 1.07996 * 119.99783 * 180.22696 * 23 22 21 42 42 H 1.07999 * 120.00095 * 179.83371 * 24 23 22 43 43 H 1.08002 * 119.99810 * 179.97438 * 25 24 23 44 44 H 1.08004 * 119.99921 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 16 1.4633 2.4557 1.1313 5 8 2.1230 3.6730 0.8118 6 8 0.0486 2.3468 1.0538 7 6 2.0664 1.8006 2.7118 8 6 1.6127 2.7168 3.8500 9 6 2.1208 2.1640 5.1831 10 6 1.6733 3.0661 6.3043 11 1 1.0857 3.9459 6.0877 12 6 2.0151 2.7686 7.6066 13 7 2.7311 1.6975 7.8703 14 14 1.4598 3.8864 8.9964 15 1 0.1395 3.4307 9.5008 16 1 2.4543 3.8378 10.0981 17 1 1.3441 5.2795 8.4951 18 6 2.0324 -0.7103 1.2304 19 7 3.2543 -0.4244 1.7219 20 8 1.3371 -1.5393 1.7784 21 6 2.0324 -0.7103 -1.2304 22 6 2.3692 0.0148 -2.3581 23 6 2.8337 -0.6365 -3.4855 24 6 2.9536 -2.0136 -3.4880 25 6 2.6118 -2.7392 -2.3622 26 6 2.1510 -2.0876 -1.2335 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 2.6667 1.6665 -0.6628 31 1 1.6628 0.8003 2.8682 32 1 3.1553 1.7544 2.6942 33 1 2.0159 3.7173 3.6938 34 1 0.5238 2.7626 3.8675 35 1 1.7173 1.1636 5.3391 36 1 3.2098 2.1179 5.1659 37 1 2.9718 1.4885 8.7864 38 1 3.8103 0.2387 1.2839 39 1 3.5761 -0.8789 2.5162 40 1 2.2719 1.0905 -2.3574 41 1 3.1003 -0.0696 -4.3652 42 1 3.3139 -2.5227 -4.3697 43 1 2.7050 -3.8152 -2.3643 44 1 1.8835 -2.6545 -0.3540 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171963149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:36 Heat of formation + Delta-G solvation = -80.151158 kcal Electronic energy + Delta-G solvation = -28406.289238 eV Core-core repulsion = 24450.938047 eV Total energy + Delta-G solvation = -3955.351192 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.01740 -38.99627 -37.16030 -36.23841 -35.83796 -34.82947 -33.73370 -32.16831 -31.67816 -31.03862 -29.31432 -27.84082 -25.01827 -23.82498 -23.12633 -22.39094 -20.78277 -20.26719 -19.24072 -18.40494 -18.04244 -17.27846 -16.80288 -16.63387 -16.07283 -15.84662 -15.44775 -15.12037 -14.81027 -14.54692 -14.49949 -14.26831 -14.09436 -13.73862 -13.33934 -13.07782 -12.73461 -12.57464 -12.31613 -12.23056 -12.12331 -11.94225 -11.81916 -11.70292 -11.45099 -11.31809 -11.02125 -10.93822 -10.91684 -10.73086 -10.43812 -9.98340 -9.82409 -9.75238 -9.39168 -9.29017 -9.16612 -9.05474 -8.41752 -6.06839 -4.09827 0.25945 0.90426 1.02829 2.14833 2.66124 3.13511 3.30004 3.36156 3.39801 3.41623 3.74731 4.10833 4.21805 4.41369 4.47788 4.57596 4.64591 4.70387 4.79239 4.90957 5.07440 5.10622 5.15666 5.24157 5.29822 5.52332 5.65565 5.76878 5.79687 5.81092 6.07652 6.13945 6.15609 6.20607 6.32185 6.39346 6.56606 6.59958 6.61696 6.83392 7.03749 7.54734 7.64993 7.90907 7.96685 8.31160 8.96145 9.54950 11.04323 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020935 B = 0.002977 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.122023 B = 9403.588355 C =10104.694282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.209 3.791 3 N -1.118 6.118 4 S 2.589 3.411 5 O -0.956 6.956 6 O -0.948 6.948 7 C -0.611 4.611 8 C -0.104 4.104 9 C 0.033 3.967 10 C -0.527 4.527 11 H 0.058 0.942 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.894 3.106 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.503 3.497 19 N -0.846 5.846 20 O -0.517 6.517 21 C -0.079 4.079 22 C -0.107 4.107 23 C -0.116 4.116 24 C -0.116 4.116 25 C -0.114 4.114 26 C -0.106 4.106 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.419 0.581 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.021 0.979 36 H 0.020 0.980 37 H 0.261 0.739 38 H 0.402 0.598 39 H 0.411 0.589 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.227 -7.581 -23.912 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.116 3.884 3 N -0.878 5.878 4 S 2.686 3.314 5 O -0.946 6.946 6 O -0.937 6.937 7 C -0.743 4.743 8 C -0.143 4.143 9 C -0.005 4.005 10 C -0.565 4.565 11 H 0.076 0.924 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.722 3.278 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.198 1.198 18 C 0.284 3.716 19 N -0.411 5.411 20 O -0.391 6.391 21 C -0.081 4.081 22 C -0.126 4.126 23 C -0.134 4.134 24 C -0.134 4.134 25 C -0.132 4.132 26 C -0.125 4.125 27 H 0.123 0.877 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.255 0.745 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.232 0.768 39 H 0.244 0.756 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.066 -7.465 -23.627 24.864 hybrid contribution 0.968 0.236 0.955 1.380 sum 3.034 -7.229 -22.672 23.990 Atomic orbital electron populations 1.22599 0.89045 1.04511 1.06451 1.19258 0.96864 0.80644 0.91631 1.56128 1.60469 1.21740 1.49422 1.05736 0.75384 0.73755 0.76518 1.93595 1.76580 1.41588 1.82863 1.93569 1.28979 1.85445 1.85748 1.30854 1.12433 1.12477 1.18578 1.21513 1.01066 0.96682 0.95076 1.19037 0.96519 0.96567 0.88380 1.21238 1.33935 1.09815 0.91508 0.92391 1.25012 0.95033 0.95346 0.98940 1.69951 1.37815 1.25693 1.19868 0.86559 0.78469 0.81102 0.81701 1.20545 1.21182 1.19757 1.20805 0.82122 0.83380 0.85261 1.44066 1.18248 1.45637 1.33196 1.90822 1.56005 1.33099 1.59138 1.19388 1.00923 0.93858 0.93924 1.20961 0.98893 1.00227 0.92490 1.21149 0.99509 0.94675 0.98095 1.21238 0.99580 0.94304 0.98317 1.21152 0.98908 1.00150 0.92988 1.21157 0.98558 0.93469 0.99280 0.87660 0.90425 0.90204 0.74486 0.85229 0.85149 0.91547 0.91503 0.96061 0.96171 0.92898 0.76846 0.75600 0.85350 0.85623 0.85875 0.85661 0.85173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 7.15 37.16 0.27 -1.82 16 2 C 0.21 2.27 0.91 -134.13 -0.12 2.15 16 3 N -1.12 -11.12 4.38 -1.35 -0.01 -11.13 16 4 S 2.59 36.06 5.37 -107.50 -0.58 35.48 16 5 O -0.96 -15.53 18.08 -57.54 -1.04 -16.57 16 6 O -0.95 -15.66 14.34 -57.54 -0.83 -16.48 16 7 C -0.61 -9.20 4.17 37.16 0.15 -9.04 16 8 C -0.10 -2.06 5.16 -26.73 -0.14 -2.20 16 9 C 0.03 0.83 4.97 -27.88 -0.14 0.69 16 10 C -0.53 -14.72 9.11 -34.44 -0.31 -15.04 16 11 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 14 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.50 6.12 3.30 -10.99 -0.04 6.09 16 19 N -0.85 -8.01 6.34 31.22 0.20 -7.81 16 20 O -0.52 -8.08 16.34 5.56 0.09 -7.99 16 21 C -0.08 -0.74 4.79 -104.63 -0.50 -1.25 16 22 C -0.11 -0.85 8.99 -39.58 -0.36 -1.21 16 23 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 24 C -0.12 -0.80 10.05 -39.59 -0.40 -1.19 16 25 C -0.11 -0.88 10.05 -39.59 -0.40 -1.28 16 26 C -0.11 -1.00 9.15 -39.58 -0.36 -1.36 16 27 H 0.11 1.53 5.44 -51.93 -0.28 1.25 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 0.95 7.87 -51.93 -0.41 0.55 16 30 H 0.42 3.06 6.72 -34.47 -0.23 2.82 16 31 H 0.13 1.97 5.72 -51.92 -0.30 1.67 16 32 H 0.13 1.61 7.13 -51.92 -0.37 1.24 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.40 2.78 7.73 -40.82 -0.32 2.47 16 39 H 0.41 3.81 8.93 -40.82 -0.36 3.44 16 40 H 0.13 0.84 6.54 -52.49 -0.34 0.50 16 41 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 42 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 44 H 0.13 1.34 6.79 -52.48 -0.36 0.98 16 LS Contribution 366.09 15.07 5.52 5.52 Total: -1.00 -36.14 366.09 -9.66 -45.80 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.89 Total: 7.42 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -2.84 Total: -25.11 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.93 Total: -44.59 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -1.77 Total: -41.04 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 36.06 SS G_CDS: -0.58 Total: 35.48 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.14 -9.66 -45.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171963149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.353 kcal (2) G-P(sol) polarization free energy of solvation -36.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds