Wall clock time and date at job start Sat Apr 11 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38110 * 120.03895 * 2 1 4 4 C 1.38286 * 120.06923 * 179.72253 * 3 2 1 5 5 C 1.38277 * 120.14339 * 0.27882 * 4 3 2 6 6 C 1.38111 * 120.07006 * 359.95012 * 5 4 3 7 7 C 1.50703 * 120.03805 * 180.02562 * 6 5 4 8 8 C 1.38878 * 120.03075 * 180.20678 * 2 1 3 9 9 N 1.39923 * 120.07217 * 359.97438 * 8 2 1 10 10 C 1.34780 * 119.99631 * 64.54795 * 9 8 2 11 11 O 1.21288 * 120.00239 * 4.83216 * 10 9 8 12 12 C 1.50696 * 119.99632 * 184.83297 * 10 9 8 13 13 N 1.46508 * 109.47015 * 179.97438 * 12 10 9 14 14 S 1.65599 * 119.99962 * 165.00026 * 13 12 10 15 15 O 1.42096 * 104.27651 * 181.07171 * 14 13 12 16 16 O 1.42104 * 104.27692 * 308.92866 * 14 13 12 17 17 C 1.81394 * 104.45088 * 65.00152 * 14 13 12 18 18 C 1.53001 * 109.47131 * 180.02562 * 17 14 13 19 19 C 1.50706 * 109.47085 * 179.97438 * 18 17 14 20 20 H 1.08002 * 119.99757 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00257 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99579 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00391 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46992 * 60.00187 * 23 21 19 25 25 H 1.48497 * 109.47369 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47135 * 300.00278 * 23 21 19 27 27 H 1.08999 * 109.47440 * 96.71265 * 1 2 3 28 28 H 1.09001 * 109.47793 * 216.72093 * 1 2 3 29 29 H 1.09003 * 109.47080 * 336.71908 * 1 2 3 30 30 H 1.07995 * 119.96779 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.92737 * 180.25073 * 4 3 2 32 32 H 1.08002 * 119.96711 * 179.97438 * 5 4 3 33 33 H 1.09009 * 109.46883 * 89.99873 * 7 6 5 34 34 H 1.08998 * 109.47642 * 210.00030 * 7 6 5 35 35 H 1.08996 * 109.47107 * 330.00677 * 7 6 5 36 36 H 0.96993 * 120.00401 * 244.54082 * 9 8 2 37 37 H 1.09000 * 109.47410 * 299.99530 * 12 10 9 38 38 H 1.08999 * 109.47390 * 59.99914 * 12 10 9 39 39 H 0.96992 * 119.99628 * 345.00427 * 13 12 10 40 40 H 1.09004 * 109.47017 * 300.00217 * 17 14 13 41 41 H 1.09001 * 109.47208 * 60.00002 * 17 14 13 42 42 H 1.08998 * 109.46811 * 299.99841 * 18 17 14 43 43 H 1.08991 * 109.47393 * 59.99908 * 18 17 14 44 44 H 0.97003 * 119.99667 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1956 0.0000 4 6 3.5812 1.1963 0.0058 5 6 4.2762 0.0009 0.0058 6 6 3.5908 -1.1981 0.0010 7 6 4.3490 -2.5005 0.0016 8 6 2.2020 -1.2023 -0.0043 9 7 1.5046 -2.4154 -0.0082 10 6 0.7334 -2.7459 -1.0630 11 8 0.7123 -2.0348 -2.0453 12 6 -0.1027 -3.9990 -1.0217 13 7 -0.8442 -4.1328 -2.2782 14 16 -1.5489 -5.5783 -2.6738 15 8 -2.1428 -5.3428 -3.9430 16 8 -0.5058 -6.5308 -2.5184 17 6 -2.8259 -5.8207 -1.4085 18 6 -3.5566 -7.1397 -1.6676 19 6 -4.6172 -7.3413 -0.6160 20 1 -4.7563 -6.6024 0.1592 21 6 -5.4105 -8.4686 -0.6443 22 7 -5.2413 -9.3682 -1.5887 23 14 -6.7255 -8.7182 0.6587 24 1 -7.6958 -7.5954 0.6042 25 1 -7.4347 -9.9985 0.4073 26 1 -6.0911 -8.7595 2.0007 27 1 -0.3634 -0.1201 -1.0206 28 1 -0.3635 -0.8237 0.6144 29 1 -0.3633 0.9440 0.4062 30 1 1.6585 2.1309 -0.0004 31 1 4.1195 2.1326 0.0099 32 1 5.3562 0.0048 0.0099 33 1 4.5278 -2.8163 1.0295 34 1 3.7647 -3.2614 -0.5158 35 1 5.3029 -2.3658 -0.5082 36 1 1.5761 -3.0184 0.7481 37 1 0.5463 -4.8646 -0.8885 38 1 -0.8050 -3.9400 -0.1903 39 1 -0.9224 -3.3748 -2.8782 40 1 -2.3602 -5.8510 -0.4235 41 1 -3.5380 -4.9964 -1.4485 42 1 -4.0222 -7.1096 -2.6527 43 1 -2.8444 -7.9637 -1.6274 44 1 -5.7992 -10.1615 -1.6083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171979114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:38 Heat of formation + Delta-G solvation = -94.929857 kcal Electronic energy + Delta-G solvation = -26901.190226 eV Core-core repulsion = 22945.198182 eV Total energy + Delta-G solvation = -3955.992044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.01620 -39.03427 -36.64423 -35.51201 -35.23192 -34.65240 -33.92873 -33.88382 -31.20430 -31.19139 -28.20360 -26.95918 -26.53250 -25.63834 -22.49921 -21.72036 -21.30155 -20.67096 -19.13907 -18.35282 -17.74796 -16.97186 -16.59018 -16.15494 -16.12603 -15.61935 -15.49376 -15.09508 -14.79777 -14.56830 -14.22037 -14.18954 -13.75459 -13.51321 -13.36171 -13.29505 -13.13164 -12.99970 -12.53161 -12.24731 -11.91682 -11.79844 -11.77015 -11.63911 -11.59964 -11.55769 -11.54446 -11.09649 -11.00330 -10.48540 -10.42489 -10.37840 -10.00829 -9.87961 -9.60428 -9.10888 -8.88461 -8.74106 -8.52726 -6.14973 -4.20944 0.69365 0.92670 1.03863 2.23531 2.64561 3.13489 3.24943 3.30255 3.31657 3.37707 4.20223 4.27689 4.35619 4.43645 4.48768 4.63195 4.63742 4.92597 4.95435 5.02104 5.05532 5.13223 5.20111 5.20368 5.26053 5.39361 5.40973 5.45176 5.49988 5.59672 5.73769 5.77080 5.92499 6.03339 6.10523 6.22270 6.25735 6.43200 6.70726 6.91996 7.11072 7.26831 7.33012 7.77349 7.81312 8.14067 8.82163 9.43916 10.95940 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.002310 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.474071 B =12119.977378 C =12623.612310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.068 4.068 3 C -0.119 4.119 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.084 4.084 7 C -0.116 4.116 8 C 0.134 3.866 9 N -0.680 5.680 10 C 0.517 3.483 11 O -0.511 6.511 12 C 0.099 3.901 13 N -1.117 6.117 14 S 2.595 3.405 15 O -0.960 6.960 16 O -0.966 6.966 17 C -0.589 4.589 18 C 0.028 3.972 19 C -0.522 4.522 20 H 0.061 0.939 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.901 3.099 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.276 1.276 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.411 0.589 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.422 0.578 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.938 19.494 7.823 27.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.070 4.070 3 C -0.137 4.137 4 C -0.131 4.131 5 C -0.138 4.138 6 C -0.086 4.086 7 C -0.173 4.173 8 C 0.042 3.958 9 N -0.330 5.330 10 C 0.303 3.697 11 O -0.384 6.384 12 C -0.032 4.032 13 N -0.877 5.877 14 S 2.692 3.308 15 O -0.950 6.950 16 O -0.956 6.956 17 C -0.723 4.723 18 C -0.011 4.011 19 C -0.561 4.561 20 H 0.079 0.921 21 C -0.145 4.145 22 N -0.528 5.528 23 Si 0.728 3.272 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.249 0.751 37 H 0.131 0.869 38 H 0.118 0.882 39 H 0.259 0.741 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 18.115 19.122 6.376 27.101 hybrid contribution -0.987 0.152 1.415 1.731 sum 17.129 19.274 7.790 26.936 Atomic orbital electron populations 1.20833 0.90814 1.02553 1.03241 1.19987 0.96437 0.92108 0.98434 1.20930 0.94216 0.97139 1.01428 1.21150 0.94220 0.98073 0.99673 1.20891 0.99785 0.91486 1.01666 1.20000 0.92322 0.96183 1.00057 1.20767 0.99972 0.94105 1.02435 1.17174 0.89716 0.85027 1.03864 1.43295 1.48093 1.20160 1.21482 1.20739 0.79489 0.87180 0.82337 1.90725 1.63953 1.52217 1.31486 1.21028 0.96136 0.97306 0.88727 1.55702 1.68889 1.33287 1.29844 1.05585 0.76173 0.72350 0.76653 1.93571 1.79008 1.83836 1.38624 1.93539 1.54508 1.60235 1.87292 1.30466 1.15427 1.10779 1.15624 1.18969 0.95879 0.87068 0.99220 1.20951 1.17178 1.06114 1.11862 0.92089 1.25071 0.97551 0.95822 0.96055 1.69946 1.39705 1.10394 1.32711 0.86522 0.81487 0.77575 0.81625 1.20087 1.21083 1.20100 0.90121 0.91651 0.91500 0.85732 0.85846 0.85730 0.90891 0.91301 0.91205 0.75140 0.86940 0.88217 0.74120 0.86282 0.85899 0.94752 0.94737 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 8.59 36.00 0.31 -0.75 16 2 C -0.07 -0.66 5.60 -104.43 -0.58 -1.25 16 3 C -0.12 -1.01 9.67 -39.61 -0.38 -1.39 16 4 C -0.11 -0.86 10.04 -39.55 -0.40 -1.26 16 5 C -0.12 -0.94 9.70 -39.61 -0.38 -1.32 16 6 C -0.08 -0.73 5.90 -104.43 -0.62 -1.35 16 7 C -0.12 -0.79 9.77 36.01 0.35 -0.44 16 8 C 0.13 1.29 5.53 -83.69 -0.46 0.83 16 9 N -0.68 -5.60 3.63 -9.86 -0.04 -5.63 16 10 C 0.52 5.57 6.74 -10.99 -0.07 5.49 16 11 O -0.51 -7.35 14.15 5.55 0.08 -7.27 16 12 C 0.10 0.98 6.61 -5.19 -0.03 0.95 16 13 N -1.12 -14.73 5.82 -11.65 -0.07 -14.80 16 14 S 2.60 44.71 5.46 -107.50 -0.59 44.12 16 15 O -0.96 -19.92 18.08 -57.54 -1.04 -20.96 16 16 O -0.97 -19.07 17.50 -57.54 -1.01 -20.07 16 17 C -0.59 -10.51 6.01 37.16 0.22 -10.29 16 18 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 19 C -0.52 -14.00 9.11 -34.44 -0.31 -14.31 16 20 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 23 Si 0.90 20.79 29.54 -169.99 -5.02 15.76 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H 0.08 0.87 7.17 -51.93 -0.37 0.50 16 28 H 0.06 0.54 7.55 -51.93 -0.39 0.15 16 29 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 30 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 32 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 33 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 34 H 0.07 0.52 7.46 -51.93 -0.39 0.13 16 35 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 36 H 0.41 2.06 8.83 -40.82 -0.36 1.70 16 37 H 0.11 1.00 7.70 -51.93 -0.40 0.60 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.42 5.59 7.66 -34.47 -0.26 5.33 16 40 H 0.12 1.78 8.14 -51.92 -0.42 1.36 16 41 H 0.12 1.98 8.14 -51.92 -0.42 1.56 16 42 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 384.04 15.07 5.79 5.79 Total: -1.00 -37.46 384.04 -10.12 -47.57 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.36 Total: 3.85 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -2.60 Total: -23.04 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.63 Total: -45.75 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -1.97 Total: -48.31 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 44.71 SS G_CDS: -0.59 Total: 44.12 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.46 -10.12 -47.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171979114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.358 kcal (2) G-P(sol) polarization free energy of solvation -37.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds