Wall clock time and date at job start Sat Apr 11 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38110 * 120.03895 * 2 1 4 4 C 1.38286 * 120.06923 * 179.72253 * 3 2 1 5 5 C 1.38277 * 120.14339 * 0.27882 * 4 3 2 6 6 C 1.38111 * 120.07006 * 359.95012 * 5 4 3 7 7 C 1.50703 * 120.03805 * 180.02562 * 6 5 4 8 8 C 1.38878 * 120.03075 * 180.20678 * 2 1 3 9 9 N 1.39923 * 120.07217 * 359.97438 * 8 2 1 10 10 C 1.34780 * 119.99631 * 64.54795 * 9 8 2 11 11 O 1.21288 * 120.00239 * 4.83216 * 10 9 8 12 12 C 1.50696 * 119.99632 * 184.83297 * 10 9 8 13 13 N 1.46508 * 109.47015 * 179.97438 * 12 10 9 14 14 S 1.65599 * 119.99962 * 165.00026 * 13 12 10 15 15 O 1.42096 * 104.27651 * 181.07171 * 14 13 12 16 16 O 1.42104 * 104.27692 * 308.92866 * 14 13 12 17 17 C 1.81394 * 104.45088 * 65.00152 * 14 13 12 18 18 C 1.53001 * 109.47131 * 180.02562 * 17 14 13 19 19 C 1.50706 * 109.47085 * 179.97438 * 18 17 14 20 20 H 1.08002 * 119.99757 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00257 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99579 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00391 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46992 * 60.00187 * 23 21 19 25 25 H 1.48497 * 109.47369 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47135 * 300.00278 * 23 21 19 27 27 H 1.08999 * 109.47440 * 96.71265 * 1 2 3 28 28 H 1.09001 * 109.47793 * 216.72093 * 1 2 3 29 29 H 1.09003 * 109.47080 * 336.71908 * 1 2 3 30 30 H 1.07995 * 119.96779 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.92737 * 180.25073 * 4 3 2 32 32 H 1.08002 * 119.96711 * 179.97438 * 5 4 3 33 33 H 1.09009 * 109.46883 * 89.99873 * 7 6 5 34 34 H 1.08998 * 109.47642 * 210.00030 * 7 6 5 35 35 H 1.08996 * 109.47107 * 330.00677 * 7 6 5 36 36 H 0.96993 * 120.00401 * 244.54082 * 9 8 2 37 37 H 1.09000 * 109.47410 * 299.99530 * 12 10 9 38 38 H 1.08999 * 109.47390 * 59.99914 * 12 10 9 39 39 H 0.96992 * 119.99628 * 345.00427 * 13 12 10 40 40 H 1.09004 * 109.47017 * 300.00217 * 17 14 13 41 41 H 1.09001 * 109.47208 * 60.00002 * 17 14 13 42 42 H 1.08998 * 109.46811 * 299.99841 * 18 17 14 43 43 H 1.08991 * 109.47393 * 59.99908 * 18 17 14 44 44 H 0.97003 * 119.99667 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1956 0.0000 4 6 3.5812 1.1963 0.0058 5 6 4.2762 0.0009 0.0058 6 6 3.5908 -1.1981 0.0010 7 6 4.3490 -2.5005 0.0016 8 6 2.2020 -1.2023 -0.0043 9 7 1.5046 -2.4154 -0.0082 10 6 0.7334 -2.7459 -1.0630 11 8 0.7123 -2.0348 -2.0453 12 6 -0.1027 -3.9990 -1.0217 13 7 -0.8442 -4.1328 -2.2782 14 16 -1.5489 -5.5783 -2.6738 15 8 -2.1428 -5.3428 -3.9430 16 8 -0.5058 -6.5308 -2.5184 17 6 -2.8259 -5.8207 -1.4085 18 6 -3.5566 -7.1397 -1.6676 19 6 -4.6172 -7.3413 -0.6160 20 1 -4.7563 -6.6024 0.1592 21 6 -5.4105 -8.4686 -0.6443 22 7 -5.2413 -9.3682 -1.5887 23 14 -6.7255 -8.7182 0.6587 24 1 -7.6958 -7.5954 0.6042 25 1 -7.4347 -9.9985 0.4073 26 1 -6.0911 -8.7595 2.0007 27 1 -0.3634 -0.1201 -1.0206 28 1 -0.3635 -0.8237 0.6144 29 1 -0.3633 0.9440 0.4062 30 1 1.6585 2.1309 -0.0004 31 1 4.1195 2.1326 0.0099 32 1 5.3562 0.0048 0.0099 33 1 4.5278 -2.8163 1.0295 34 1 3.7647 -3.2614 -0.5158 35 1 5.3029 -2.3658 -0.5082 36 1 1.5761 -3.0184 0.7481 37 1 0.5463 -4.8646 -0.8885 38 1 -0.8050 -3.9400 -0.1903 39 1 -0.9224 -3.3748 -2.8782 40 1 -2.3602 -5.8510 -0.4235 41 1 -3.5380 -4.9964 -1.4485 42 1 -4.0222 -7.1096 -2.6527 43 1 -2.8444 -7.9637 -1.6274 44 1 -5.7992 -10.1615 -1.6083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171979114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:38 Heat of formation + Delta-G solvation = -122.546085 kcal Electronic energy + Delta-G solvation = -26902.387756 eV Core-core repulsion = 22945.198182 eV Total energy + Delta-G solvation = -3957.189574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.73623 -39.76619 -38.16861 -37.02437 -36.02173 -35.85799 -35.62806 -34.49265 -33.09117 -31.84435 -28.96476 -27.55959 -27.54132 -27.28305 -23.56925 -23.19267 -21.94232 -21.38817 -20.39438 -19.37793 -18.95172 -18.39330 -17.57534 -17.39245 -17.06670 -16.96131 -16.49455 -16.30101 -16.02218 -15.86047 -15.14318 -14.84560 -14.80437 -14.47396 -14.46489 -14.18859 -13.88970 -13.87052 -13.68360 -13.59577 -13.20957 -13.15463 -13.09666 -12.87367 -12.83336 -12.76419 -12.51093 -12.19763 -12.18561 -12.16551 -12.14635 -11.71263 -11.27089 -11.19509 -10.72207 -10.60558 -10.48285 -9.49911 -9.38904 -8.22732 -6.36299 -0.71633 0.28790 0.41818 1.43751 1.43902 1.46737 1.54726 1.69686 2.13088 2.40766 2.76893 2.83591 3.11118 3.28069 3.50354 3.83665 3.90305 4.02749 4.09414 4.16667 4.25262 4.31403 4.39285 4.45049 4.51791 4.58853 4.62811 4.73084 4.79304 4.81610 4.85480 4.93030 5.14646 5.30730 5.31978 5.33492 5.41914 5.50014 5.61179 5.62327 5.72011 5.95365 6.09468 6.09506 6.35831 6.77864 7.08903 7.33824 8.89211 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.002310 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.474071 B =12119.977378 C =12623.612310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.130 4.130 4 C -0.116 4.116 5 C -0.127 4.127 6 C -0.096 4.096 7 C -0.114 4.114 8 C 0.113 3.887 9 N -0.663 5.663 10 C 0.519 3.481 11 O -0.553 6.553 12 C 0.086 3.914 13 N -1.107 6.107 14 S 2.624 3.376 15 O -1.000 7.000 16 O -0.992 6.992 17 C -0.583 4.583 18 C 0.018 3.982 19 C -0.536 4.536 20 H 0.079 0.921 21 C -0.006 4.006 22 N -0.935 5.935 23 Si 0.973 3.027 24 H -0.265 1.265 25 H -0.288 1.288 26 H -0.261 1.261 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.427 0.573 37 H 0.127 0.873 38 H 0.141 0.859 39 H 0.424 0.576 40 H 0.155 0.845 41 H 0.145 0.855 42 H 0.004 0.996 43 H 0.011 0.989 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.585 20.978 10.438 29.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.149 4.149 4 C -0.134 4.134 5 C -0.145 4.145 6 C -0.097 4.097 7 C -0.171 4.171 8 C 0.020 3.980 9 N -0.314 5.314 10 C 0.306 3.694 11 O -0.429 6.429 12 C -0.043 4.043 13 N -0.869 5.869 14 S 2.721 3.279 15 O -0.991 6.991 16 O -0.982 6.982 17 C -0.716 4.716 18 C -0.021 4.021 19 C -0.575 4.575 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.575 5.575 23 Si 0.797 3.203 24 H -0.190 1.190 25 H -0.214 1.214 26 H -0.185 1.185 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.156 0.844 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.267 0.733 37 H 0.145 0.855 38 H 0.159 0.841 39 H 0.262 0.738 40 H 0.173 0.827 41 H 0.163 0.837 42 H 0.022 0.978 43 H 0.029 0.971 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 18.783 20.608 9.038 29.312 hybrid contribution -1.070 -0.222 0.618 1.255 sum 17.714 20.386 9.656 28.681 Atomic orbital electron populations 1.20786 0.90715 1.03507 1.02031 1.20217 0.96840 0.92776 0.99243 1.21209 0.94916 0.97412 1.01322 1.21486 0.94097 0.99138 0.98631 1.21225 1.00964 0.91289 1.01025 1.20287 0.92227 0.97347 0.99888 1.20791 0.99817 0.92982 1.03488 1.17399 0.90358 0.85322 1.04872 1.43115 1.46921 1.20039 1.21279 1.20829 0.79461 0.86913 0.82213 1.90714 1.65471 1.53584 1.33170 1.21471 0.97159 0.97520 0.88183 1.55226 1.68663 1.31719 1.31332 1.04456 0.75466 0.72458 0.75538 1.93511 1.79814 1.84672 1.41069 1.93501 1.55333 1.61939 1.87443 1.30319 1.15771 1.07696 1.17780 1.18843 0.95726 0.90054 0.97481 1.21502 1.17271 1.06330 1.12387 0.90245 1.26115 1.00221 0.95692 0.98361 1.70104 1.41182 1.11156 1.35036 0.85379 0.78466 0.77448 0.79039 1.18976 1.21376 1.18505 0.92263 0.91169 0.90188 0.84363 0.83542 0.83706 0.89164 0.92266 0.90548 0.73292 0.85506 0.84125 0.73827 0.82664 0.83701 0.97814 0.97095 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 8.59 71.23 0.61 -1.35 16 2 C -0.09 -1.66 5.60 -19.74 -0.11 -1.77 16 3 C -0.13 -2.05 9.67 22.25 0.22 -1.84 16 4 C -0.12 -1.56 10.04 22.29 0.22 -1.33 16 5 C -0.13 -1.75 9.70 22.25 0.22 -1.54 16 6 C -0.10 -1.53 5.90 -19.74 -0.12 -1.65 16 7 C -0.11 -1.36 9.77 71.24 0.70 -0.67 16 8 C 0.11 2.04 5.53 38.16 0.21 2.25 16 9 N -0.66 -9.86 3.63 -303.49 -1.10 -10.96 16 10 C 0.52 10.48 6.74 87.66 0.59 11.07 16 11 O -0.55 -15.77 14.15 -3.05 -0.04 -15.81 16 12 C 0.09 1.50 6.61 85.63 0.57 2.07 16 13 N -1.11 -27.67 5.82 -190.78 -1.11 -28.78 16 14 S 2.62 89.15 5.46 -56.49 -0.31 88.84 16 15 O -1.00 -42.21 18.08 -127.65 -2.31 -44.52 16 16 O -0.99 -38.89 17.50 -127.65 -2.23 -41.13 16 17 C -0.58 -19.84 6.01 71.98 0.43 -19.40 16 18 C 0.02 0.89 4.98 29.85 0.15 1.04 16 19 C -0.54 -28.42 9.11 25.60 0.23 -28.18 16 20 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 21 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 22 N -0.94 -55.97 13.29 21.45 0.28 -55.69 16 23 Si 0.97 42.09 29.54 68.60 2.03 44.12 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 25 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 27 H 0.06 1.28 7.17 -2.39 -0.02 1.26 16 28 H 0.07 1.08 7.55 -2.39 -0.02 1.06 16 29 H 0.08 1.09 8.04 -2.39 -0.02 1.07 16 30 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 31 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 32 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.06 0.82 7.46 -2.39 -0.02 0.80 16 35 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 36 H 0.43 3.33 8.83 -92.71 -0.82 2.51 16 37 H 0.13 1.92 7.70 -2.39 -0.02 1.90 16 38 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.42 10.95 7.66 -96.75 -0.74 10.21 16 40 H 0.16 4.11 8.14 -2.39 -0.02 4.09 16 41 H 0.14 4.31 8.14 -2.39 -0.02 4.29 16 42 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -83.13 384.04 -0.94 -84.07 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -0.53 Total: 20.99 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 4.38 Total: -41.13 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -1.93 Total: -95.43 kcal Atomic # 8 Polarization: -96.87 SS G_CDS: -4.58 Total: -101.46 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 89.15 SS G_CDS: -0.31 Total: 88.84 kcal Total: -83.13 -0.94 -84.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171979114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.478 kcal (2) G-P(sol) polarization free energy of solvation -83.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds