Wall clock time and date at job start Sat Apr 11 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39044 * 120.04485 * 2 1 4 4 N 1.39540 * 120.08343 * 0.02562 * 3 2 1 5 5 C 1.34773 * 119.99682 * 204.76204 * 4 3 2 6 6 O 1.21741 * 120.00532 * 5.35508 * 5 4 3 7 7 C 1.46175 * 119.99482 * 185.34944 * 5 4 3 8 8 H 1.07998 * 119.99973 * 0.02562 * 7 5 4 9 9 C 1.40118 * 119.99891 * 179.97438 * 7 5 4 10 10 N 1.30642 * 120.00181 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 120.00115 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47252 * 60.00309 * 11 9 7 13 13 H 1.48504 * 109.47335 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47117 * 299.99946 * 11 9 7 15 15 C 1.39013 * 119.83813 * 180.25189 * 3 2 1 16 16 C 1.38087 * 119.91109 * 359.77205 * 15 3 2 17 17 C 1.38310 * 120.08324 * 0.02562 * 16 15 3 18 18 C 1.38039 * 120.04089 * 179.79673 * 2 1 3 19 19 S 1.76202 * 119.95833 * 359.97438 * 18 2 1 20 20 O 1.42099 * 106.40219 * 183.29063 * 19 18 2 21 21 O 1.42102 * 106.40127 * 50.37581 * 19 18 2 22 22 N 1.65596 * 107.22054 * 296.83237 * 19 18 2 23 23 C 1.46503 * 119.99984 * 293.62785 * 22 19 18 24 24 C 1.52996 * 109.47291 * 64.06902 * 23 22 19 25 25 C 1.52996 * 109.47127 * 184.07754 * 23 22 19 26 26 C 1.53007 * 109.46795 * 304.06984 * 23 22 19 27 27 H 1.08997 * 109.46767 * 275.02155 * 1 2 3 28 28 H 1.08995 * 109.47210 * 35.02103 * 1 2 3 29 29 H 1.09002 * 109.47168 * 155.01881 * 1 2 3 30 30 H 0.96998 * 119.99425 * 24.75260 * 4 3 2 31 31 H 0.97005 * 120.00440 * 180.02562 * 10 9 7 32 32 H 1.07995 * 120.04382 * 179.79607 * 15 3 2 33 33 H 1.07990 * 119.95300 * 179.97438 * 16 15 3 34 34 H 1.07997 * 119.91337 * 179.97438 * 17 16 15 35 35 H 0.96996 * 120.00088 * 113.34963 * 22 19 18 36 36 H 1.09003 * 109.47009 * 64.27006 * 24 23 22 37 37 H 1.09003 * 109.47034 * 184.26016 * 24 23 22 38 38 H 1.08989 * 109.47705 * 304.26169 * 24 23 22 39 39 H 1.08996 * 109.47916 * 59.99329 * 25 23 22 40 40 H 1.09004 * 109.47171 * 180.02562 * 25 23 22 41 41 H 1.09009 * 109.47055 * 299.99455 * 25 23 22 42 42 H 1.09006 * 109.46783 * 66.62066 * 26 23 22 43 43 H 1.09004 * 109.46936 * 186.61951 * 26 23 22 44 44 H 1.08993 * 109.47324 * 306.62004 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2032 1.2036 0.0000 4 7 1.5082 2.4136 0.0005 5 6 2.0915 3.5259 -0.4883 6 8 3.1851 3.4569 -1.0187 7 6 1.4109 4.8151 -0.3817 8 1 0.4408 4.8763 0.0891 9 6 2.0174 5.9717 -0.8895 10 7 3.1910 5.8977 -1.4586 11 14 1.1480 7.6194 -0.7526 12 1 0.9118 7.9371 0.6786 13 1 1.9935 8.6773 -1.3620 14 1 -0.1526 7.5536 -1.4664 15 6 3.5933 1.1986 -0.0053 16 6 4.2775 -0.0008 -0.0058 17 6 3.5816 -1.1960 -0.0015 18 6 2.1981 -1.1950 0.0042 19 16 1.3170 -2.7209 0.0103 20 8 2.2950 -3.7486 0.0921 21 8 0.3631 -2.6376 -1.0396 22 7 0.4541 -2.7831 1.4223 23 6 1.1550 -2.8722 2.7058 24 6 1.9810 -1.6032 2.9250 25 6 0.1336 -3.0175 3.8356 26 6 2.0823 -4.0892 2.6970 27 1 -0.3633 0.0900 1.0237 28 1 -0.3633 0.8415 -0.5897 29 1 -0.3633 -0.9315 -0.4340 30 1 0.6053 2.4541 0.3526 31 1 3.6112 6.6984 -1.8098 32 1 4.1373 2.1315 -0.0086 33 1 5.3574 -0.0055 -0.0103 34 1 4.1195 -2.1325 -0.0023 35 1 -0.5152 -2.7566 1.3999 36 1 1.3139 -0.7451 3.0069 37 1 2.5611 -1.7012 3.8426 38 1 2.6565 -1.4591 2.0818 39 1 -0.4549 -3.9216 3.6794 40 1 0.6550 -3.0833 4.7905 41 1 -0.5271 -2.1505 3.8418 42 1 2.8805 -3.9326 1.9713 43 1 2.5141 -4.2241 3.6887 44 1 1.5130 -4.9779 2.4248 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186937883.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:38 Heat of formation + Delta-G solvation = -85.637516 kcal Electronic energy + Delta-G solvation = -28785.794350 eV Core-core repulsion = 24830.205252 eV Total energy + Delta-G solvation = -3955.589098 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.70021 -38.20120 -37.22894 -36.99383 -35.77868 -33.80219 -32.81455 -32.12504 -31.09255 -29.56236 -27.57422 -27.31408 -26.90914 -26.06729 -23.02605 -21.37591 -20.73298 -20.18386 -19.04515 -17.80592 -17.65177 -17.24298 -16.27280 -15.76637 -15.32990 -15.18011 -15.03634 -14.46005 -14.38648 -14.22186 -13.85393 -13.63253 -13.30435 -13.15702 -12.83995 -12.78664 -12.68150 -12.42999 -12.32195 -12.08751 -12.00102 -11.83255 -11.77877 -11.55260 -11.48173 -11.39809 -11.31397 -11.14098 -11.04171 -10.77044 -10.64188 -10.45410 -10.41595 -9.64374 -9.59580 -9.02072 -8.67639 -7.85495 -7.19634 -6.46272 -4.94950 0.52288 1.27795 1.77755 3.00787 3.02301 3.07443 3.09077 3.72615 3.89030 3.97238 4.37988 4.39440 4.54809 4.61670 4.74330 4.83961 5.01564 5.13072 5.22609 5.40096 5.42266 5.49007 5.49324 5.60726 5.67077 5.70904 5.74265 5.84364 5.88100 5.91621 6.03397 6.04787 6.06009 6.23220 6.33486 6.38357 6.42656 6.81678 6.90396 6.92474 7.13729 7.20000 7.56903 7.88675 8.01223 8.72778 9.04441 10.22487 10.43130 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020223 B = 0.003177 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.257464 B = 8810.362858 C = 9092.373984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.048 4.048 3 C 0.178 3.822 4 N -0.692 5.692 5 C 0.540 3.460 6 O -0.558 6.558 7 C -0.537 4.537 8 H 0.073 0.927 9 C 0.087 3.913 10 N -0.757 5.757 11 Si 0.915 3.085 12 H -0.266 1.266 13 H -0.278 1.278 14 H -0.266 1.266 15 C -0.085 4.085 16 C -0.122 4.122 17 C -0.073 4.073 18 C -0.649 4.649 19 S 2.700 3.300 20 O -0.962 6.962 21 O -0.964 6.964 22 N -1.109 6.109 23 C 0.176 3.824 24 C -0.188 4.188 25 C -0.148 4.148 26 C -0.181 4.181 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.395 0.605 31 H 0.274 0.726 32 H 0.160 0.840 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.416 0.584 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.097 -14.921 10.452 18.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.053 4.053 3 C 0.077 3.923 4 N -0.333 5.333 5 C 0.348 3.652 6 O -0.441 6.441 7 C -0.572 4.572 8 H 0.091 0.909 9 C -0.135 4.135 10 N -0.384 5.384 11 Si 0.739 3.261 12 H -0.191 1.191 13 H -0.203 1.203 14 H -0.191 1.191 15 C -0.106 4.106 16 C -0.142 4.142 17 C -0.094 4.094 18 C -0.738 4.738 19 S 2.792 3.208 20 O -0.952 6.952 21 O -0.955 6.955 22 N -0.869 5.869 23 C 0.088 3.912 24 C -0.246 4.246 25 C -0.206 4.206 26 C -0.239 4.239 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.229 0.771 31 H 0.085 0.915 32 H 0.177 0.823 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.250 0.750 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.978 -15.377 9.325 18.418 hybrid contribution -1.040 1.710 0.442 2.050 sum -5.018 -13.667 9.766 17.531 Atomic orbital electron populations 1.21336 0.91273 1.05901 1.02877 1.19031 0.95027 0.90890 1.00374 1.17918 0.91918 0.86077 0.96416 1.44187 1.18228 1.06977 1.63922 1.18411 0.86011 0.82621 0.78165 1.90577 1.21825 1.84926 1.46775 1.20821 1.05529 0.90285 1.40581 0.90917 1.25749 0.94358 1.00567 0.92860 1.69960 1.12763 1.30041 1.25661 0.86308 0.79880 0.80573 0.79374 1.19066 1.20312 1.19052 1.22050 0.93320 1.00074 0.95182 1.21128 0.99825 0.92004 1.01251 1.20615 0.91567 0.98964 0.98302 1.30061 1.05921 1.17853 1.19926 1.01576 0.73297 0.73904 0.72002 1.93520 1.61338 1.54390 1.85910 1.93543 1.61482 1.87270 1.53168 1.55664 1.18479 1.91398 1.21314 1.20169 0.92485 0.95688 0.82872 1.22685 1.00962 0.97024 1.03960 1.22043 0.98692 1.02413 0.97493 1.22661 1.00795 0.97055 1.03403 0.90607 0.90027 0.89114 0.77147 0.91501 0.82317 0.85717 0.84974 0.75012 0.91520 0.91091 0.90484 0.91932 0.91111 0.91839 0.88981 0.91723 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 8.69 36.01 0.31 -1.88 16 2 C -0.05 -0.80 5.88 -104.40 -0.61 -1.42 16 3 C 0.18 3.54 6.42 -83.76 -0.54 3.00 16 4 N -0.69 -14.70 4.98 -11.19 -0.06 -14.76 16 5 C 0.54 14.27 7.55 -13.08 -0.10 14.17 16 6 O -0.56 -16.55 12.15 5.15 0.06 -16.49 16 7 C -0.54 -14.02 9.54 -35.69 -0.34 -14.36 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 9 C 0.09 2.25 5.50 -17.35 -0.10 2.15 16 10 N -0.76 -21.19 11.82 55.55 0.66 -20.53 16 11 Si 0.91 18.83 29.56 -169.99 -5.02 13.80 16 12 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 13 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 14 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 15 C -0.09 -1.73 8.72 -39.35 -0.34 -2.07 16 16 C -0.12 -2.05 10.04 -39.61 -0.40 -2.45 16 17 C -0.07 -1.13 8.22 -39.51 -0.32 -1.46 16 18 C -0.65 -10.08 3.45 -39.61 -0.14 -10.21 16 19 S 2.70 37.12 4.85 -107.50 -0.52 36.60 16 20 O -0.96 -14.39 13.47 -57.17 -0.77 -15.16 16 21 O -0.96 -15.77 15.54 -57.17 -0.89 -16.66 16 22 N -1.11 -10.99 5.27 0.54 0.00 -10.99 16 23 C 0.18 1.60 1.14 -131.82 -0.15 1.45 16 24 C -0.19 -1.91 8.11 37.16 0.30 -1.61 16 25 C -0.15 -1.00 8.59 37.16 0.32 -0.68 16 26 C -0.18 -1.74 7.66 37.16 0.28 -1.45 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 1.18 7.26 -51.93 -0.38 0.80 16 29 H 0.09 1.24 4.77 -51.93 -0.25 0.99 16 30 H 0.39 7.14 7.49 -40.82 -0.31 6.83 16 31 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 32 H 0.16 3.71 5.75 -52.49 -0.30 3.41 16 33 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.13 1.78 7.33 -52.49 -0.38 1.39 16 35 H 0.42 3.18 8.61 -34.47 -0.30 2.88 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.92 4.05 -51.94 -0.21 0.70 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 42 H 0.09 1.05 5.79 -51.93 -0.30 0.75 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 358.84 15.07 5.41 5.41 Total: -1.00 -33.87 358.84 -8.73 -42.59 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -5.78 Total: 13.00 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -1.82 Total: -16.82 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.60 Total: -46.28 kcal Atomic # 8 Polarization: -46.71 SS G_CDS: -1.60 Total: -48.30 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.80 kcal Atomic # 16 Polarization: 37.12 SS G_CDS: -0.52 Total: 36.60 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.87 -8.73 -42.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186937883.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.045 kcal (2) G-P(sol) polarization free energy of solvation -33.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds