Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39044 * 120.04485 * 2 1 4 4 N 1.39540 * 120.08343 * 0.02562 * 3 2 1 5 5 C 1.34773 * 119.99682 * 204.76204 * 4 3 2 6 6 O 1.21741 * 120.00532 * 5.35508 * 5 4 3 7 7 C 1.46175 * 119.99482 * 185.34944 * 5 4 3 8 8 H 1.07998 * 119.99973 * 0.02562 * 7 5 4 9 9 C 1.40118 * 119.99891 * 179.97438 * 7 5 4 10 10 N 1.30642 * 120.00181 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 120.00115 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47252 * 60.00309 * 11 9 7 13 13 H 1.48504 * 109.47335 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47117 * 299.99946 * 11 9 7 15 15 C 1.39013 * 119.83813 * 180.25189 * 3 2 1 16 16 C 1.38087 * 119.91109 * 359.77205 * 15 3 2 17 17 C 1.38310 * 120.08324 * 0.02562 * 16 15 3 18 18 C 1.38039 * 120.04089 * 179.79673 * 2 1 3 19 19 S 1.76202 * 119.95833 * 359.97438 * 18 2 1 20 20 O 1.42099 * 106.40219 * 183.29063 * 19 18 2 21 21 O 1.42102 * 106.40127 * 50.37581 * 19 18 2 22 22 N 1.65596 * 107.22054 * 296.83237 * 19 18 2 23 23 C 1.46503 * 119.99984 * 293.62785 * 22 19 18 24 24 C 1.52996 * 109.47291 * 64.06902 * 23 22 19 25 25 C 1.52996 * 109.47127 * 184.07754 * 23 22 19 26 26 C 1.53007 * 109.46795 * 304.06984 * 23 22 19 27 27 H 1.08997 * 109.46767 * 275.02155 * 1 2 3 28 28 H 1.08995 * 109.47210 * 35.02103 * 1 2 3 29 29 H 1.09002 * 109.47168 * 155.01881 * 1 2 3 30 30 H 0.96998 * 119.99425 * 24.75260 * 4 3 2 31 31 H 0.97005 * 120.00440 * 180.02562 * 10 9 7 32 32 H 1.07995 * 120.04382 * 179.79607 * 15 3 2 33 33 H 1.07990 * 119.95300 * 179.97438 * 16 15 3 34 34 H 1.07997 * 119.91337 * 179.97438 * 17 16 15 35 35 H 0.96996 * 120.00088 * 113.34963 * 22 19 18 36 36 H 1.09003 * 109.47009 * 64.27006 * 24 23 22 37 37 H 1.09003 * 109.47034 * 184.26016 * 24 23 22 38 38 H 1.08989 * 109.47705 * 304.26169 * 24 23 22 39 39 H 1.08996 * 109.47916 * 59.99329 * 25 23 22 40 40 H 1.09004 * 109.47171 * 180.02562 * 25 23 22 41 41 H 1.09009 * 109.47055 * 299.99455 * 25 23 22 42 42 H 1.09006 * 109.46783 * 66.62066 * 26 23 22 43 43 H 1.09004 * 109.46936 * 186.61951 * 26 23 22 44 44 H 1.08993 * 109.47324 * 306.62004 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2032 1.2036 0.0000 4 7 1.5082 2.4136 0.0005 5 6 2.0915 3.5259 -0.4883 6 8 3.1851 3.4569 -1.0187 7 6 1.4109 4.8151 -0.3817 8 1 0.4408 4.8763 0.0891 9 6 2.0174 5.9717 -0.8895 10 7 3.1910 5.8977 -1.4586 11 14 1.1480 7.6194 -0.7526 12 1 0.9118 7.9371 0.6786 13 1 1.9935 8.6773 -1.3620 14 1 -0.1526 7.5536 -1.4664 15 6 3.5933 1.1986 -0.0053 16 6 4.2775 -0.0008 -0.0058 17 6 3.5816 -1.1960 -0.0015 18 6 2.1981 -1.1950 0.0042 19 16 1.3170 -2.7209 0.0103 20 8 2.2950 -3.7486 0.0921 21 8 0.3631 -2.6376 -1.0396 22 7 0.4541 -2.7831 1.4223 23 6 1.1550 -2.8722 2.7058 24 6 1.9810 -1.6032 2.9250 25 6 0.1336 -3.0175 3.8356 26 6 2.0823 -4.0892 2.6970 27 1 -0.3633 0.0900 1.0237 28 1 -0.3633 0.8415 -0.5897 29 1 -0.3633 -0.9315 -0.4340 30 1 0.6053 2.4541 0.3526 31 1 3.6112 6.6984 -1.8098 32 1 4.1373 2.1315 -0.0086 33 1 5.3574 -0.0055 -0.0103 34 1 4.1195 -2.1325 -0.0023 35 1 -0.5152 -2.7566 1.3999 36 1 1.3139 -0.7451 3.0069 37 1 2.5611 -1.7012 3.8426 38 1 2.6565 -1.4591 2.0818 39 1 -0.4549 -3.9216 3.6794 40 1 0.6550 -3.0833 4.7905 41 1 -0.5271 -2.1505 3.8418 42 1 2.8805 -3.9326 1.9713 43 1 2.5141 -4.2241 3.6887 44 1 1.5130 -4.9779 2.4248 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186937883.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = -110.700843 kcal Electronic energy + Delta-G solvation = -28786.881177 eV Core-core repulsion = 24830.205252 eV Total energy + Delta-G solvation = -3956.675925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.21965 -39.17804 -38.85375 -38.12210 -36.97039 -35.51031 -34.68819 -33.60164 -31.95105 -31.07173 -28.64920 -28.13774 -28.02929 -27.62137 -24.52537 -22.86930 -21.87215 -21.46773 -20.18845 -19.57296 -18.76954 -18.53429 -17.73170 -17.24434 -16.73277 -16.58845 -16.31364 -15.88058 -15.69665 -15.12952 -15.01443 -14.71236 -14.64341 -14.53203 -14.34380 -14.13180 -13.83181 -13.48289 -13.38730 -13.30145 -13.14154 -12.98706 -12.89959 -12.79216 -12.75281 -12.69641 -12.51091 -12.35729 -12.30445 -12.13549 -12.09603 -11.76986 -11.43536 -11.17686 -10.91949 -10.50996 -10.10863 -9.79170 -8.79435 -8.40462 -6.98942 -0.59842 -0.08894 0.36598 1.38726 1.40875 1.53593 1.97193 2.18414 2.26928 2.57288 2.77319 2.82347 3.45823 3.52657 3.74346 3.83274 3.97075 4.03689 4.06889 4.14469 4.37060 4.44661 4.57416 4.63270 4.65841 4.70004 4.80407 4.84717 4.97339 5.04986 5.08879 5.12195 5.15845 5.21516 5.31663 5.35856 5.36847 5.45379 5.50478 5.61910 5.67147 5.77592 6.10131 6.19893 6.27381 6.73827 7.25394 8.27669 8.51682 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020223 B = 0.003177 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.257464 B = 8810.362858 C = 9092.373984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.037 4.037 3 C 0.145 3.855 4 N -0.684 5.684 5 C 0.527 3.473 6 O -0.603 6.603 7 C -0.564 4.564 8 H 0.095 0.905 9 C 0.031 3.969 10 N -0.811 5.811 11 Si 1.000 3.000 12 H -0.252 1.252 13 H -0.275 1.275 14 H -0.254 1.254 15 C -0.113 4.113 16 C -0.122 4.122 17 C -0.064 4.064 18 C -0.652 4.652 19 S 2.721 3.279 20 O -0.970 6.970 21 O -0.988 6.988 22 N -1.093 6.093 23 C 0.175 3.825 24 C -0.193 4.193 25 C -0.145 4.145 26 C -0.185 4.185 27 H 0.111 0.889 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.409 0.591 31 H 0.278 0.722 32 H 0.119 0.881 33 H 0.146 0.854 34 H 0.157 0.843 35 H 0.429 0.571 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.359 -16.257 12.268 21.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.041 4.041 3 C 0.046 3.954 4 N -0.327 5.327 5 C 0.334 3.666 6 O -0.489 6.489 7 C -0.599 4.599 8 H 0.113 0.887 9 C -0.186 4.186 10 N -0.440 5.440 11 Si 0.819 3.181 12 H -0.176 1.176 13 H -0.200 1.200 14 H -0.178 1.178 15 C -0.135 4.135 16 C -0.141 4.141 17 C -0.084 4.084 18 C -0.738 4.738 19 S 2.810 3.190 20 O -0.960 6.960 21 O -0.978 6.978 22 N -0.856 5.856 23 C 0.088 3.912 24 C -0.251 4.251 25 C -0.203 4.203 26 C -0.244 4.244 27 H 0.129 0.871 28 H 0.093 0.907 29 H 0.116 0.884 30 H 0.245 0.755 31 H 0.088 0.912 32 H 0.137 0.863 33 H 0.164 0.836 34 H 0.175 0.825 35 H 0.267 0.733 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.265 -16.747 11.159 21.077 hybrid contribution -0.303 1.895 -0.043 1.920 sum -6.568 -14.851 11.116 19.679 Atomic orbital electron populations 1.21474 0.89123 1.05988 1.05117 1.19274 0.96562 0.89862 0.98432 1.18108 0.91965 0.86526 0.98792 1.43688 1.18686 1.06565 1.63766 1.18751 0.85661 0.84188 0.77967 1.90550 1.23636 1.86062 1.48675 1.21380 1.06571 0.90796 1.41148 0.88742 1.26987 0.94836 1.05111 0.91629 1.70128 1.15011 1.31575 1.27242 0.85020 0.78560 0.74449 0.80042 1.17600 1.19974 1.17800 1.21820 0.93957 0.99798 0.97900 1.21303 1.00976 0.91247 1.00618 1.20928 0.91880 0.99237 0.96366 1.30555 1.06306 1.18603 1.18361 1.00995 0.72786 0.72859 0.72336 1.93521 1.62022 1.54111 1.86366 1.93513 1.61930 1.87286 1.55094 1.55385 1.19123 1.90683 1.20458 1.20305 0.93045 0.94936 0.82923 1.22727 1.00941 0.97573 1.03859 1.22045 0.98247 1.03316 0.96740 1.22694 1.00385 0.97242 1.04067 0.87057 0.90660 0.88382 0.75529 0.91164 0.86342 0.83621 0.82522 0.73310 0.91644 0.89662 0.92508 0.90857 0.89840 0.91120 0.90962 0.89738 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.20 8.69 71.24 0.62 -3.59 16 2 C -0.04 -1.20 5.88 -19.72 -0.12 -1.32 16 3 C 0.15 5.97 6.42 38.29 0.25 6.22 16 4 N -0.68 -30.11 4.98 -307.53 -1.53 -31.64 16 5 C 0.53 29.21 7.55 86.30 0.65 29.86 16 6 O -0.60 -38.21 12.15 -4.48 -0.05 -38.27 16 7 C -0.56 -30.16 9.54 24.79 0.24 -29.92 16 8 H 0.09 4.44 7.85 -2.91 -0.02 4.42 16 9 C 0.03 1.65 5.50 85.33 0.47 2.12 16 10 N -0.81 -47.40 11.82 21.85 0.26 -47.14 16 11 Si 1.00 38.69 29.56 68.60 2.03 40.72 16 12 H -0.25 -9.11 7.11 99.48 0.71 -8.41 16 13 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 14 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 15 C -0.11 -4.89 8.72 22.42 0.20 -4.70 16 16 C -0.12 -4.19 10.04 22.25 0.22 -3.96 16 17 C -0.06 -1.92 8.22 22.31 0.18 -1.74 16 18 C -0.65 -19.55 3.45 22.25 0.08 -19.48 16 19 S 2.72 69.34 4.85 -56.49 -0.27 69.07 16 20 O -0.97 -27.10 13.47 -128.00 -1.72 -28.82 16 21 O -0.99 -30.46 15.54 -128.00 -1.99 -32.45 16 22 N -1.09 -18.45 5.27 -152.21 -0.80 -19.25 16 23 C 0.18 2.65 1.14 3.60 0.00 2.65 16 24 C -0.19 -3.47 8.11 71.98 0.58 -2.88 16 25 C -0.14 -1.38 8.59 71.98 0.62 -0.76 16 26 C -0.19 -3.04 7.66 71.98 0.55 -2.49 16 27 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.07 2.10 7.26 -2.39 -0.02 2.08 16 29 H 0.10 2.46 4.77 -2.39 -0.01 2.45 16 30 H 0.41 14.95 7.49 -92.71 -0.69 14.25 16 31 H 0.28 14.77 8.29 -92.70 -0.77 14.01 16 32 H 0.12 6.10 5.75 -2.91 -0.02 6.08 16 33 H 0.15 4.21 8.06 -2.92 -0.02 4.18 16 34 H 0.16 3.94 7.33 -2.91 -0.02 3.92 16 35 H 0.43 5.05 8.61 -96.75 -0.83 4.22 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.26 4.05 -2.39 -0.01 1.25 16 39 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 42 H 0.07 1.50 5.79 -2.38 -0.01 1.49 16 43 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -77.76 358.84 -0.01 -77.77 By element: Atomic # 1 Polarization: 40.46 SS G_CDS: -0.47 Total: 39.99 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 4.54 Total: -29.98 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -2.07 Total: -98.04 kcal Atomic # 8 Polarization: -95.77 SS G_CDS: -3.77 Total: -99.53 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Atomic # 16 Polarization: 69.34 SS G_CDS: -0.27 Total: 69.07 kcal Total: -77.76 -0.01 -77.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186937883.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.929 kcal (2) G-P(sol) polarization free energy of solvation -77.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds