Wall clock time and date at job start Sat Apr 11 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30719 * 126.27430 * 2 1 4 4 N 1.28649 * 110.34181 * 179.80416 * 3 2 1 5 5 C 1.32184 * 109.56702 * 0.36592 * 4 3 2 6 6 C 1.41050 * 133.25666 * 179.97438 * 5 4 3 7 7 C 1.35632 * 119.40071 * 179.67840 * 6 5 4 8 8 C 1.41821 * 119.60255 * 359.97438 * 7 6 5 9 9 C 1.47602 * 119.98028 * 179.97438 * 8 7 6 10 10 O 1.21580 * 120.00295 * 311.54465 * 9 8 7 11 11 N 1.34783 * 119.99348 * 131.54333 * 9 8 7 12 12 C 1.46497 * 120.00050 * 5.02620 * 11 9 8 13 13 C 1.50700 * 109.47261 * 95.77034 * 12 11 9 14 14 H 1.08000 * 119.99489 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00105 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99829 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00053 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46919 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47060 * 120.00001 * 17 15 13 20 20 H 1.48498 * 109.46726 * 239.99798 * 17 15 13 21 21 C 1.46502 * 119.99523 * 185.02525 * 11 9 8 22 22 C 1.50700 * 109.47203 * 89.99887 * 21 11 9 23 23 C 1.34516 * 125.78866 * 89.99884 * 22 21 11 24 24 C 1.41380 * 106.84363 * 180.02562 * 23 22 21 25 25 C 1.34517 * 106.83923 * 0.02562 * 24 23 22 26 26 O 1.34297 * 125.79327 * 269.68987 * 22 21 11 27 27 C 1.36493 * 120.03786 * 359.97438 * 8 7 6 28 28 N 1.35850 * 120.38264 * 0.03468 * 27 8 7 29 29 H 1.08999 * 109.46659 * 269.96851 * 1 2 3 30 30 H 1.08994 * 109.47205 * 29.96627 * 1 2 3 31 31 H 1.08997 * 109.46878 * 149.97436 * 1 2 3 32 32 H 1.07996 * 120.29505 * 359.70477 * 6 5 4 33 33 H 1.07999 * 120.19979 * 180.02562 * 7 6 5 34 34 H 1.09005 * 109.46461 * 215.76645 * 12 11 9 35 35 H 1.08997 * 109.47646 * 335.76462 * 12 11 9 36 36 H 0.96999 * 119.99717 * 180.02562 * 16 15 13 37 37 H 1.08997 * 109.46970 * 210.00285 * 21 11 9 38 38 H 1.09005 * 109.47210 * 330.00005 * 21 11 9 39 39 H 1.08005 * 126.57739 * 0.03785 * 23 22 21 40 40 H 1.07996 * 126.58186 * 179.97438 * 24 23 22 41 41 H 1.07996 * 125.78814 * 180.02562 * 25 24 23 42 42 H 1.07998 * 119.80833 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2804 1.0538 0.0000 4 7 3.5175 0.7007 0.0041 5 6 3.6013 -0.6185 -0.0009 6 6 4.6878 -1.5180 -0.0002 7 6 4.4471 -2.8528 0.0000 8 6 3.1093 -3.3234 0.0000 9 6 2.8378 -4.7742 -0.0003 10 8 3.4123 -5.5001 -0.7886 11 7 1.9530 -5.2944 0.8733 12 6 1.1799 -4.4089 1.7476 13 6 -0.1654 -4.1376 1.1250 14 1 -0.4189 -4.5802 0.1730 15 6 -1.0721 -3.3236 1.7702 16 7 -0.7631 -2.7843 2.9292 17 14 -2.7394 -2.9868 0.9981 18 1 -2.8393 -3.7058 -0.2973 19 1 -3.8118 -3.4585 1.9106 20 1 -2.8922 -1.5279 0.7671 21 6 1.7645 -6.7453 0.9485 22 6 2.7205 -7.3244 1.9593 23 6 2.4735 -7.4890 3.2713 24 6 3.6358 -8.0602 3.8385 25 6 4.5238 -8.2099 2.8392 26 8 3.9614 -7.7689 1.7021 27 6 2.0726 -2.4355 0.0004 28 7 2.3132 -1.0985 0.0000 29 1 -0.3632 -0.0006 1.0277 30 1 -0.3633 0.8902 -0.5133 31 1 -0.3633 -0.8897 -0.5142 32 1 5.7021 -1.1471 0.0006 33 1 5.2693 -3.5530 0.0010 34 1 1.0417 -4.8864 2.7177 35 1 1.7159 -3.4689 1.8785 36 1 -1.4011 -2.2119 3.3832 37 1 0.7402 -6.9634 1.2506 38 1 1.9571 -7.1879 -0.0289 39 1 1.5621 -7.2340 3.7916 40 1 3.7829 -8.3247 4.8751 41 1 5.5181 -8.6208 2.9341 42 1 1.0553 -2.7980 0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263806777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:44 Heat of formation + Delta-G solvation = 95.102831 kcal Electronic energy + Delta-G solvation = -29902.238995 eV Core-core repulsion = 25851.336187 eV Total energy + Delta-G solvation = -4050.902809 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.25020 -42.30221 -39.74051 -37.37648 -35.59230 -34.03407 -33.16468 -32.68083 -31.74755 -31.02382 -29.80956 -27.72870 -27.14944 -25.90414 -24.26076 -23.36695 -22.97395 -21.47018 -21.30449 -20.48984 -19.36010 -17.62173 -17.43967 -17.33881 -16.63062 -16.40433 -16.23783 -16.04558 -15.32437 -14.81438 -14.76766 -14.58291 -14.35488 -13.75227 -13.38583 -12.97547 -12.85858 -12.71113 -12.59656 -12.54869 -12.43686 -12.38128 -12.18052 -11.85203 -11.62647 -11.50631 -11.29456 -11.16464 -10.98462 -10.83679 -10.51287 -10.26457 -10.12273 -9.71850 -9.63835 -9.18536 -8.90326 -8.34335 -8.15667 -7.71604 -6.53741 -4.66693 0.83799 1.21882 1.88967 2.49314 2.76287 2.83513 2.96594 3.08686 3.09910 3.11753 3.32053 3.58180 3.75223 4.02078 4.30316 4.65180 4.70843 4.83642 4.90719 4.99761 5.03770 5.12970 5.24450 5.27510 5.51108 5.64717 5.65756 5.74497 5.88310 5.94620 6.00199 6.09265 6.13111 6.16161 6.29477 6.31375 6.34352 6.36110 6.57191 6.71419 6.86707 7.10276 7.12108 7.38325 7.39901 7.64958 7.90426 8.39718 8.57352 8.79629 9.03055 10.50775 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009604 B = 0.005169 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.863299 B = 5415.223886 C = 7500.835623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.161 3.839 3 N -0.260 5.260 4 N -0.302 5.302 5 C 0.197 3.803 6 C -0.104 4.104 7 C -0.041 4.041 8 C -0.162 4.162 9 C 0.573 3.427 10 O -0.547 6.547 11 N -0.585 5.585 12 C 0.226 3.774 13 C -0.562 4.562 14 H 0.070 0.930 15 C 0.074 3.926 16 N -0.871 5.871 17 Si 0.884 3.116 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.274 1.274 21 C 0.198 3.802 22 C -0.020 4.020 23 C -0.198 4.198 24 C -0.217 4.217 25 C -0.050 4.050 26 O -0.168 6.168 27 C 0.136 3.864 28 N -0.389 5.389 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.271 0.729 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.197 0.803 42 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.291 -5.078 -0.888 6.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.101 4.101 3 N -0.100 5.100 4 N -0.146 5.146 5 C -0.052 4.052 6 C -0.126 4.126 7 C -0.066 4.066 8 C -0.169 4.169 9 C 0.360 3.640 10 O -0.426 6.426 11 N -0.315 5.315 12 C 0.107 3.893 13 C -0.599 4.599 14 H 0.088 0.912 15 C -0.132 4.132 16 N -0.506 5.506 17 Si 0.710 3.290 18 H -0.192 1.192 19 H -0.204 1.204 20 H -0.199 1.199 21 C 0.074 3.926 22 C -0.072 4.072 23 C -0.218 4.218 24 C -0.236 4.236 25 C -0.118 4.118 26 O -0.063 6.063 27 C 0.012 3.988 28 N -0.069 5.069 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.174 0.826 33 H 0.165 0.835 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.135 0.865 38 H 0.112 0.888 39 H 0.167 0.833 40 H 0.162 0.838 41 H 0.214 0.786 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 4.965 -3.653 -1.415 6.325 hybrid contribution -1.300 -1.148 0.383 1.776 sum 3.666 -4.801 -1.032 6.128 Atomic orbital electron populations 1.20269 0.83035 1.04228 1.04921 1.24900 0.96950 0.80613 1.07664 1.74102 0.96607 1.23555 1.15695 1.74798 1.11020 1.06196 1.22636 1.22416 0.85271 0.92739 1.04789 1.19974 0.96933 0.90521 1.05134 1.21017 0.95638 0.95080 0.94837 1.19417 0.93276 0.94122 1.10042 1.17745 0.79297 0.86236 0.80755 1.90750 1.51432 1.60807 1.39570 1.48201 1.39069 1.06182 1.38001 1.19733 0.90181 0.89503 0.89895 1.21544 0.99668 1.31351 1.07372 0.91187 1.24988 0.98497 0.95122 0.94615 1.69938 1.36100 1.30397 1.14168 0.86641 0.83576 0.78839 0.79908 1.19172 1.20370 1.19896 1.19725 0.95512 0.80371 0.96962 1.23138 0.85002 1.02363 0.96689 1.21689 1.00827 1.05631 0.93636 1.21807 0.94685 1.06738 1.00347 1.23981 0.99716 1.04482 0.83608 1.84092 1.26150 1.61412 1.34679 1.23398 1.04322 0.79009 0.92075 1.43705 1.08693 1.07178 1.47277 0.88904 0.88931 0.90023 0.82600 0.83509 0.93964 0.94021 0.91925 0.86496 0.88780 0.83302 0.83814 0.78605 0.77126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.40 36.01 0.37 -0.63 16 2 C 0.16 2.98 8.14 -154.12 -1.25 1.73 16 3 N -0.26 -5.19 12.18 32.97 0.40 -4.79 16 4 N -0.30 -6.05 12.29 31.19 0.38 -5.66 16 5 C 0.20 3.66 7.92 -155.95 -1.23 2.42 16 6 C -0.10 -1.59 10.09 -39.45 -0.40 -1.99 16 7 C -0.04 -0.64 9.74 -39.14 -0.38 -1.02 16 8 C -0.16 -2.91 4.94 -105.34 -0.52 -3.43 16 9 C 0.57 10.96 7.22 -12.44 -0.09 10.87 16 10 O -0.55 -11.37 16.58 5.29 0.09 -11.28 16 11 N -0.58 -10.87 2.44 -177.64 -0.43 -11.30 16 12 C 0.23 4.63 4.66 -5.20 -0.02 4.61 16 13 C -0.56 -11.96 6.87 -34.44 -0.24 -12.20 16 14 H 0.07 1.50 7.81 -52.49 -0.41 1.09 16 15 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.87 -20.54 13.29 55.43 0.74 -19.80 16 17 Si 0.88 17.17 29.54 -169.99 -5.02 12.15 16 18 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 19 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 21 C 0.20 3.26 5.99 -5.19 -0.03 3.22 16 22 C -0.02 -0.33 6.90 -35.62 -0.25 -0.58 16 23 C -0.20 -3.03 10.81 -39.70 -0.43 -3.46 16 24 C -0.22 -2.90 10.91 -39.70 -0.43 -3.33 16 25 C -0.05 -0.65 12.09 29.42 0.36 -0.29 16 26 O -0.17 -2.76 10.65 5.72 0.06 -2.70 16 27 C 0.14 2.52 8.36 -16.40 -0.14 2.38 16 28 N -0.39 -7.31 2.94 -59.37 -0.17 -7.48 16 29 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16 33 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 34 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 35 H 0.04 0.92 5.41 -51.93 -0.28 0.64 16 36 H 0.27 6.15 8.31 -40.82 -0.34 5.81 16 37 H 0.12 1.76 8.07 -51.93 -0.42 1.34 16 38 H 0.09 1.53 7.36 -51.93 -0.38 1.15 16 39 H 0.15 2.18 8.06 -52.48 -0.42 1.76 16 40 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.21 4.08 4.70 -52.49 -0.25 3.83 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -28.13 366.22 -7.90 -36.03 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -4.68 Total: 9.48 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -4.78 Total: -0.15 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.91 Total: -49.04 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.15 Total: -13.98 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.02 Total: 12.15 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.13 -7.90 -36.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263806777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.133 kcal (2) G-P(sol) polarization free energy of solvation -28.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds