Wall clock time and date at job start Sat Apr 11 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30719 * 126.27430 * 2 1 4 4 N 1.28649 * 110.34181 * 179.80416 * 3 2 1 5 5 C 1.32184 * 109.56702 * 0.36592 * 4 3 2 6 6 C 1.41050 * 133.25666 * 179.97438 * 5 4 3 7 7 C 1.35632 * 119.40071 * 179.67840 * 6 5 4 8 8 C 1.41821 * 119.60255 * 359.97438 * 7 6 5 9 9 C 1.47602 * 119.98028 * 179.97438 * 8 7 6 10 10 O 1.21580 * 120.00295 * 311.54465 * 9 8 7 11 11 N 1.34783 * 119.99348 * 131.54333 * 9 8 7 12 12 C 1.46497 * 120.00050 * 5.02620 * 11 9 8 13 13 C 1.50700 * 109.47261 * 95.77034 * 12 11 9 14 14 H 1.08000 * 119.99489 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00105 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99829 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00053 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46919 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47060 * 120.00001 * 17 15 13 20 20 H 1.48498 * 109.46726 * 239.99798 * 17 15 13 21 21 C 1.46502 * 119.99523 * 185.02525 * 11 9 8 22 22 C 1.50700 * 109.47203 * 89.99887 * 21 11 9 23 23 C 1.34516 * 125.78866 * 89.99884 * 22 21 11 24 24 C 1.41380 * 106.84363 * 180.02562 * 23 22 21 25 25 C 1.34517 * 106.83923 * 0.02562 * 24 23 22 26 26 O 1.34297 * 125.79327 * 269.68987 * 22 21 11 27 27 C 1.36493 * 120.03786 * 359.97438 * 8 7 6 28 28 N 1.35850 * 120.38264 * 0.03468 * 27 8 7 29 29 H 1.08999 * 109.46659 * 269.96851 * 1 2 3 30 30 H 1.08994 * 109.47205 * 29.96627 * 1 2 3 31 31 H 1.08997 * 109.46878 * 149.97436 * 1 2 3 32 32 H 1.07996 * 120.29505 * 359.70477 * 6 5 4 33 33 H 1.07999 * 120.19979 * 180.02562 * 7 6 5 34 34 H 1.09005 * 109.46461 * 215.76645 * 12 11 9 35 35 H 1.08997 * 109.47646 * 335.76462 * 12 11 9 36 36 H 0.96999 * 119.99717 * 180.02562 * 16 15 13 37 37 H 1.08997 * 109.46970 * 210.00285 * 21 11 9 38 38 H 1.09005 * 109.47210 * 330.00005 * 21 11 9 39 39 H 1.08005 * 126.57739 * 0.03785 * 23 22 21 40 40 H 1.07996 * 126.58186 * 179.97438 * 24 23 22 41 41 H 1.07996 * 125.78814 * 180.02562 * 25 24 23 42 42 H 1.07998 * 119.80833 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2804 1.0538 0.0000 4 7 3.5175 0.7007 0.0041 5 6 3.6013 -0.6185 -0.0009 6 6 4.6878 -1.5180 -0.0002 7 6 4.4471 -2.8528 0.0000 8 6 3.1093 -3.3234 0.0000 9 6 2.8378 -4.7742 -0.0003 10 8 3.4123 -5.5001 -0.7886 11 7 1.9530 -5.2944 0.8733 12 6 1.1799 -4.4089 1.7476 13 6 -0.1654 -4.1376 1.1250 14 1 -0.4189 -4.5802 0.1730 15 6 -1.0721 -3.3236 1.7702 16 7 -0.7631 -2.7843 2.9292 17 14 -2.7394 -2.9868 0.9981 18 1 -2.8393 -3.7058 -0.2973 19 1 -3.8118 -3.4585 1.9106 20 1 -2.8922 -1.5279 0.7671 21 6 1.7645 -6.7453 0.9485 22 6 2.7205 -7.3244 1.9593 23 6 2.4735 -7.4890 3.2713 24 6 3.6358 -8.0602 3.8385 25 6 4.5238 -8.2099 2.8392 26 8 3.9614 -7.7689 1.7021 27 6 2.0726 -2.4355 0.0004 28 7 2.3132 -1.0985 0.0000 29 1 -0.3632 -0.0006 1.0277 30 1 -0.3633 0.8902 -0.5133 31 1 -0.3633 -0.8897 -0.5142 32 1 5.7021 -1.1471 0.0006 33 1 5.2693 -3.5530 0.0010 34 1 1.0417 -4.8864 2.7177 35 1 1.7159 -3.4689 1.8785 36 1 -1.4011 -2.2119 3.3832 37 1 0.7402 -6.9634 1.2506 38 1 1.9571 -7.1879 -0.0289 39 1 1.5621 -7.2340 3.7916 40 1 3.7829 -8.3247 4.8751 41 1 5.5181 -8.6208 2.9341 42 1 1.0553 -2.7980 0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263806777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:43 Heat of formation + Delta-G solvation = 82.354046 kcal Electronic energy + Delta-G solvation = -29902.791824 eV Core-core repulsion = 25851.336187 eV Total energy + Delta-G solvation = -4051.455638 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.67560 -43.45028 -41.23096 -38.79790 -37.14172 -35.40799 -34.78442 -33.87857 -33.13957 -32.32938 -31.12011 -29.33372 -28.51492 -27.21580 -25.70594 -24.91765 -24.41633 -22.69891 -22.58733 -21.72192 -20.74840 -19.05011 -18.97525 -18.69745 -18.03256 -17.82735 -17.68162 -17.38053 -16.67800 -16.39348 -16.15621 -15.91852 -15.63752 -15.10443 -14.75313 -14.34394 -14.24977 -14.17165 -13.87853 -13.77553 -13.68363 -13.58997 -13.52395 -13.26017 -13.12783 -13.02402 -12.69188 -12.63272 -12.51958 -12.16431 -12.12110 -11.75474 -11.71304 -11.21608 -10.81703 -10.71860 -10.53824 -9.78012 -9.41468 -9.10542 -8.25186 -6.42595 -0.54632 -0.14434 0.72337 1.07757 1.37904 1.41951 1.50914 1.57165 1.61225 1.72540 2.09424 2.27339 2.30566 2.42940 2.93788 3.03943 3.26904 3.46969 3.57133 3.72135 3.73672 3.86337 4.13194 4.17284 4.24375 4.38347 4.39779 4.53624 4.58621 4.67385 4.72539 4.81355 4.86218 4.93532 4.97921 5.00332 5.04563 5.15433 5.21422 5.26905 5.52203 5.63692 5.67337 5.70271 5.94700 6.22803 6.37236 6.71296 7.02246 7.30876 7.33986 8.79455 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009604 B = 0.005169 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.863299 B = 5415.223886 C = 7500.835623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.156 3.844 3 N -0.281 5.281 4 N -0.324 5.324 5 C 0.187 3.813 6 C -0.091 4.091 7 C -0.040 4.040 8 C -0.164 4.164 9 C 0.572 3.428 10 O -0.565 6.565 11 N -0.583 5.583 12 C 0.245 3.755 13 C -0.558 4.558 14 H 0.069 0.931 15 C 0.045 3.955 16 N -0.901 5.901 17 Si 0.932 3.068 18 H -0.265 1.265 19 H -0.287 1.287 20 H -0.260 1.260 21 C 0.197 3.803 22 C -0.046 4.046 23 C -0.203 4.203 24 C -0.226 4.226 25 C -0.040 4.040 26 O -0.189 6.189 27 C 0.126 3.874 28 N -0.395 5.395 29 H 0.085 0.915 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.194 0.806 33 H 0.173 0.827 34 H 0.024 0.976 35 H 0.027 0.973 36 H 0.270 0.730 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.148 0.852 40 H 0.170 0.830 41 H 0.239 0.761 42 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.189 -5.723 -0.939 7.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.107 4.107 3 N -0.119 5.119 4 N -0.169 5.169 5 C -0.063 4.063 6 C -0.112 4.112 7 C -0.065 4.065 8 C -0.171 4.171 9 C 0.360 3.640 10 O -0.445 6.445 11 N -0.312 5.312 12 C 0.125 3.875 13 C -0.595 4.595 14 H 0.087 0.913 15 C -0.159 4.159 16 N -0.538 5.538 17 Si 0.756 3.244 18 H -0.189 1.189 19 H -0.213 1.213 20 H -0.185 1.185 21 C 0.074 3.926 22 C -0.097 4.097 23 C -0.223 4.223 24 C -0.245 4.245 25 C -0.108 4.108 26 O -0.085 6.085 27 C 0.002 3.998 28 N -0.075 5.075 29 H 0.104 0.896 30 H 0.137 0.863 31 H 0.105 0.895 32 H 0.211 0.789 33 H 0.190 0.810 34 H 0.042 0.958 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.143 0.857 38 H 0.111 0.889 39 H 0.166 0.834 40 H 0.188 0.812 41 H 0.255 0.745 42 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 5.859 -4.299 -1.470 7.414 hybrid contribution -1.517 -1.038 0.445 1.891 sum 4.342 -5.337 -1.026 6.956 Atomic orbital electron populations 1.20398 0.81270 1.05767 1.04856 1.25430 0.98008 0.80328 1.06910 1.74037 0.96892 1.24293 1.16724 1.74718 1.11260 1.07042 1.23858 1.22961 0.86014 0.92792 1.04493 1.20426 0.97735 0.89792 1.03234 1.21267 0.95128 0.95679 0.94380 1.19554 0.94480 0.93427 1.09660 1.17890 0.79023 0.86637 0.80465 1.90734 1.52159 1.61376 1.40244 1.48193 1.38606 1.06998 1.37442 1.19367 0.89976 0.88874 0.89310 1.21629 0.99900 1.30899 1.07107 0.91331 1.25491 1.00872 0.94863 0.94717 1.70024 1.37054 1.31332 1.15415 0.85905 0.80086 0.79402 0.78963 1.18929 1.21325 1.18486 1.19789 0.96359 0.79090 0.97322 1.22989 0.85556 1.04256 0.96909 1.21893 1.01608 1.05256 0.93532 1.22146 0.93858 1.06660 1.01843 1.24862 1.00933 1.02599 0.82358 1.84074 1.26185 1.61966 1.36317 1.23134 1.04038 0.79124 0.93502 1.43797 1.09055 1.07217 1.47436 0.89607 0.86328 0.89534 0.78902 0.80995 0.95751 0.95521 0.92026 0.85739 0.88850 0.83411 0.81209 0.74474 0.78150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.93 10.40 71.24 0.74 -1.19 16 2 C 0.16 5.75 8.14 137.68 1.12 6.87 16 3 N -0.28 -11.14 12.18 -49.61 -0.60 -11.74 16 4 N -0.32 -12.85 12.29 -55.23 -0.68 -13.52 16 5 C 0.19 6.77 7.92 134.12 1.06 7.83 16 6 C -0.09 -2.59 10.09 22.36 0.23 -2.36 16 7 C -0.04 -1.17 9.74 22.55 0.22 -0.95 16 8 C -0.16 -5.82 4.94 -20.33 -0.10 -5.92 16 9 C 0.57 21.75 7.22 86.71 0.63 22.37 16 10 O -0.56 -23.19 16.58 -3.97 -0.07 -23.26 16 11 N -0.58 -21.80 2.44 -834.19 -2.04 -23.83 16 12 C 0.25 10.18 4.66 85.63 0.40 10.58 16 13 C -0.56 -23.87 6.87 25.60 0.18 -23.69 16 14 H 0.07 2.93 7.81 -2.91 -0.02 2.90 16 15 C 0.04 1.95 5.46 84.65 0.46 2.41 16 16 N -0.90 -42.89 13.29 21.45 0.28 -42.61 16 17 Si 0.93 34.73 29.54 68.60 2.03 36.76 16 18 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 19 H -0.29 -11.11 7.11 99.48 0.71 -10.41 16 20 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 21 C 0.20 6.53 5.99 85.63 0.51 7.04 16 22 C -0.05 -1.50 6.90 24.83 0.17 -1.33 16 23 C -0.20 -6.08 10.81 22.19 0.24 -5.84 16 24 C -0.23 -5.58 10.91 22.19 0.24 -5.34 16 25 C -0.04 -0.95 12.09 66.97 0.81 -0.14 16 26 O -0.19 -5.99 10.65 -2.46 -0.03 -6.01 16 27 C 0.13 4.68 8.36 83.66 0.70 5.37 16 28 N -0.40 -14.77 2.94 -341.74 -1.00 -15.78 16 29 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.19 3.95 8.06 -2.91 -0.02 3.93 16 33 H 0.17 4.16 8.06 -2.91 -0.02 4.13 16 34 H 0.02 1.10 8.11 -2.38 -0.02 1.08 16 35 H 0.03 1.21 5.41 -2.39 -0.01 1.19 16 36 H 0.27 12.37 8.31 -92.71 -0.77 11.60 16 37 H 0.12 3.81 8.07 -2.39 -0.02 3.79 16 38 H 0.09 3.07 7.36 -2.38 -0.02 3.05 16 39 H 0.15 4.35 8.06 -2.91 -0.02 4.32 16 40 H 0.17 3.18 8.06 -2.91 -0.02 3.15 16 41 H 0.24 3.25 8.06 -2.91 -0.02 3.23 16 42 H 0.20 7.84 4.70 -2.91 -0.01 7.83 16 Total: -1.00 -60.42 366.22 6.57 -53.85 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 1.07 Total: 30.43 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 7.61 Total: 15.72 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -4.04 Total: -107.49 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.09 Total: -29.27 kcal Atomic # 14 Polarization: 34.73 SS G_CDS: 2.03 Total: 36.76 kcal Total: -60.42 6.57 -53.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263806777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.206 kcal (2) G-P(sol) polarization free energy of solvation -60.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds