Wall clock time and date at job start Sat Apr 11 2020 05:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.46852 * 2 1 4 4 C 1.34885 * 116.99929 * 179.97438 * 3 2 1 5 5 O 1.21643 * 119.99961 * 359.97438 * 4 3 2 6 6 C 1.46435 * 120.00238 * 179.97438 * 4 3 2 7 7 C 1.44686 * 123.60757 * 359.97438 * 6 4 3 8 8 C 1.32503 * 113.16606 * 180.02562 * 7 6 4 9 9 C 1.50709 * 124.58085 * 180.02562 * 8 7 6 10 10 C 1.52992 * 109.47378 * 89.99858 * 9 8 7 11 11 S 1.75453 * 110.83923 * 0.26216 * 8 7 6 12 12 C 1.37182 * 123.61407 * 179.97438 * 6 4 3 13 13 N 1.38613 * 124.65747 * 0.02562 * 12 6 4 14 14 C 1.34785 * 119.99562 * 179.97438 * 13 12 6 15 15 O 1.21270 * 119.99975 * 359.97438 * 14 13 12 16 16 C 1.50695 * 119.99593 * 179.97438 * 14 13 12 17 17 N 1.46503 * 109.46695 * 180.02562 * 16 14 13 18 18 C 1.46496 * 120.00157 * 90.00504 * 17 16 14 19 19 C 1.36945 * 119.99904 * 269.99761 * 17 16 14 20 20 H 1.08003 * 119.99641 * 23.04304 * 19 17 16 21 21 C 1.38808 * 119.99849 * 203.04184 * 19 17 16 22 22 N 1.31621 * 120.00349 * 12.96432 * 21 19 17 23 23 Si 1.86796 * 119.99947 * 192.95625 * 21 19 17 24 24 H 1.48499 * 109.47139 * 90.00051 * 23 21 19 25 25 H 1.48495 * 109.47572 * 210.00190 * 23 21 19 26 26 H 1.48510 * 109.47116 * 330.00759 * 23 21 19 27 27 H 1.09004 * 109.46858 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47178 * 300.00169 * 1 2 3 29 29 H 1.08998 * 109.47037 * 60.00394 * 1 2 3 30 30 H 1.09000 * 109.47178 * 239.99831 * 2 1 3 31 31 H 1.08998 * 109.47037 * 119.99606 * 2 1 3 32 32 H 1.08001 * 123.41802 * 359.96336 * 7 6 4 33 33 H 1.09001 * 109.47129 * 329.99381 * 9 8 7 34 34 H 1.09000 * 109.46597 * 209.99818 * 9 8 7 35 35 H 1.08996 * 109.47234 * 180.02562 * 10 9 8 36 36 H 1.09010 * 109.46877 * 299.99969 * 10 9 8 37 37 H 1.09001 * 109.47380 * 59.99677 * 10 9 8 38 38 H 0.97001 * 120.00317 * 359.97438 * 13 12 6 39 39 H 1.09005 * 109.47363 * 300.00099 * 16 14 13 40 40 H 1.08997 * 109.47315 * 60.00115 * 16 14 13 41 41 H 1.08993 * 109.47622 * 95.11934 * 18 17 16 42 42 H 1.09006 * 109.46963 * 215.11781 * 18 17 16 43 43 H 1.09003 * 109.46874 * 335.11573 * 18 17 16 44 44 H 0.96992 * 120.00043 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3512 1.5458 0.0005 5 8 4.0922 0.5811 0.0015 6 6 3.9109 2.8989 0.0000 7 6 3.1035 4.0996 -0.0016 8 6 3.8235 5.2119 -0.0024 9 6 3.2466 6.6042 -0.0035 10 6 3.0511 7.0765 1.4385 11 16 5.5392 4.8449 -0.0086 12 6 5.2569 3.1640 0.0010 13 7 6.2506 2.1977 0.0021 14 6 7.5475 2.5648 0.0025 15 8 7.8449 3.7404 0.0014 16 6 8.6278 1.5142 0.0043 17 7 9.9408 2.1641 0.0051 18 6 10.5962 2.4898 1.2741 19 6 10.5556 2.4668 -1.1806 20 1 9.9679 2.5834 -2.0792 21 6 11.9340 2.6240 -1.2273 22 7 12.6753 2.2382 -0.2105 23 14 12.7369 3.3829 -2.7336 24 1 12.8242 4.8551 -2.5592 25 1 14.1017 2.8227 -2.9023 26 1 11.9229 3.0745 -3.9368 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0235 4.0901 -0.0032 33 1 2.2854 6.5988 -0.5176 34 1 3.9298 7.2801 -0.5178 35 1 2.6334 8.0833 1.4376 36 1 2.3678 6.4005 1.9527 37 1 4.0122 7.0819 1.9525 38 1 6.0127 1.2573 0.0026 39 1 8.5296 0.8934 0.8949 40 1 8.5307 0.8916 -0.8850 41 1 11.2840 1.6886 1.5441 42 1 11.1493 3.4232 1.1682 43 1 9.8429 2.6004 2.0541 44 1 13.6384 2.3477 -0.2434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263924220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:47 Heat of formation + Delta-G solvation = -74.791965 kcal Electronic energy + Delta-G solvation = -27118.953509 eV Core-core repulsion = 23163.834710 eV Total energy + Delta-G solvation = -3955.118800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.59533 -39.65674 -37.68675 -36.51121 -35.46835 -34.71592 -33.01891 -31.83498 -31.38919 -28.62258 -27.25097 -25.91780 -25.26204 -23.84344 -22.86819 -22.02217 -21.02437 -20.31603 -19.79565 -18.04779 -17.10255 -16.98589 -16.70744 -16.62558 -15.62653 -15.49772 -15.19053 -14.85146 -14.42731 -14.28486 -14.00250 -13.73559 -13.53953 -13.41996 -13.15845 -13.06813 -12.98684 -12.61189 -12.26444 -12.02902 -11.91790 -11.82966 -11.48259 -11.34946 -11.30656 -10.91048 -10.84067 -10.75183 -10.68647 -10.49750 -10.46560 -10.42560 -10.05602 -9.97746 -9.42062 -8.61409 -8.38640 -7.90932 -6.91804 -5.81353 -3.29072 0.79104 1.33604 1.85026 2.08423 2.75460 2.87325 3.16286 3.26541 3.38491 3.43673 3.45091 4.44908 4.58917 4.69417 4.73777 4.90701 5.01099 5.02880 5.09185 5.21924 5.23616 5.33845 5.40069 5.49917 5.51135 5.58300 5.68370 5.71362 5.75521 5.82833 5.96429 6.04089 6.08630 6.14812 6.28512 6.41808 6.46430 6.67467 7.31554 7.45567 7.63828 7.75233 7.76722 8.22982 8.38047 9.11548 9.71620 10.18040 11.23706 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012208 B = 0.003094 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.047753 B = 9046.566536 C =10587.115829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.352 6.352 4 C 0.542 3.458 5 O -0.532 6.532 6 C -0.252 4.252 7 C -0.065 4.065 8 C -0.274 4.274 9 C -0.044 4.044 10 C -0.149 4.149 11 S 0.315 5.685 12 C 0.107 3.893 13 N -0.634 5.634 14 C 0.462 3.538 15 O -0.481 6.481 16 C 0.140 3.860 17 N -0.570 5.570 18 C 0.161 3.839 19 C -0.260 4.260 20 H 0.068 0.932 21 C 0.008 3.992 22 N -0.903 5.903 23 Si 0.910 3.090 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.278 1.278 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.145 0.855 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.427 0.573 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.039 0.961 42 H 0.046 0.954 43 H -0.002 1.002 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.036 1.380 2.630 24.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.269 6.269 4 C 0.390 3.610 5 O -0.424 6.424 6 C -0.270 4.270 7 C -0.093 4.093 8 C -0.390 4.390 9 C -0.083 4.083 10 C -0.207 4.207 11 S 0.576 5.424 12 C -0.116 4.116 13 N -0.284 5.284 14 C 0.247 3.753 15 O -0.353 6.353 16 C 0.006 3.994 17 N -0.288 5.288 18 C 0.017 3.983 19 C -0.389 4.389 20 H 0.086 0.914 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.204 1.204 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.162 0.838 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.271 0.729 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.017 0.983 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.953 2.710 2.653 22.278 hybrid contribution -1.076 -1.226 -0.767 1.803 sum -23.029 1.484 1.886 23.154 Atomic orbital electron populations 1.21799 0.92738 1.02869 1.03467 1.22998 0.95177 0.80353 1.02652 1.86581 1.23801 1.31923 1.84631 1.20158 0.80303 0.88623 0.71963 1.90709 1.60045 1.42548 1.49066 1.18734 0.90081 0.91817 1.26369 1.20633 0.99867 0.88829 0.99975 1.24882 1.00756 0.99383 1.14017 1.19946 1.00473 0.90041 0.97826 1.21805 1.02228 1.00726 0.95897 1.84594 0.99043 0.90220 1.68564 1.22427 0.91152 0.99195 0.98825 1.44323 1.04553 1.10274 1.69261 1.24833 0.82478 0.94084 0.73868 1.90543 1.80138 1.19315 1.45269 1.20674 0.84903 0.91275 1.02538 1.43658 1.13607 1.67246 1.04294 1.20899 0.93319 1.00416 0.83679 1.19146 0.89516 1.42944 0.87285 0.91388 1.24997 0.96173 1.00036 0.97843 1.70070 1.04719 1.48820 1.31110 0.86178 0.78506 0.79206 0.82163 1.21266 1.21621 1.20363 0.90302 0.91525 0.91506 0.91227 0.91247 0.83753 0.90533 0.91018 0.92373 0.92450 0.92387 0.72945 0.90314 0.89242 0.94313 0.93555 0.98290 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.29 37.16 0.38 -0.59 16 2 C 0.06 0.59 6.20 37.16 0.23 0.82 16 3 O -0.35 -4.32 9.95 -41.00 -0.41 -4.73 16 4 C 0.54 7.86 7.91 34.03 0.27 8.13 16 5 O -0.53 -8.43 14.24 -19.38 -0.28 -8.71 16 6 C -0.25 -3.69 6.00 -104.44 -0.63 -4.32 16 7 C -0.07 -0.81 9.97 -38.95 -0.39 -1.20 16 8 C -0.27 -3.33 5.68 -36.22 -0.21 -3.53 16 9 C -0.04 -0.41 6.39 -27.88 -0.18 -0.58 16 10 C -0.15 -1.26 9.89 37.15 0.37 -0.89 16 11 S 0.31 4.76 19.93 -107.50 -2.14 2.62 16 12 C 0.11 1.73 6.98 -14.87 -0.10 1.63 16 13 N -0.63 -10.59 5.33 -11.61 -0.06 -10.65 16 14 C 0.46 8.96 7.86 -10.98 -0.09 8.87 16 15 O -0.48 -10.68 13.85 5.57 0.08 -10.61 16 16 C 0.14 2.78 6.12 -5.19 -0.03 2.75 16 17 N -0.57 -14.31 2.41 -182.50 -0.44 -14.75 16 18 C 0.16 4.00 8.98 59.84 0.54 4.54 16 19 C -0.26 -7.17 9.65 -15.06 -0.15 -7.32 16 20 H 0.07 1.87 7.86 -52.48 -0.41 1.45 16 21 C 0.01 0.23 5.10 -17.43 -0.09 0.15 16 22 N -0.90 -26.08 10.71 55.49 0.59 -25.49 16 23 Si 0.91 22.08 29.57 -169.99 -5.03 17.05 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.43 6.64 6.17 -40.82 -0.25 6.39 16 39 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 40 H 0.09 1.66 8.04 -51.93 -0.42 1.25 16 41 H 0.04 1.00 7.34 -51.93 -0.38 0.62 16 42 H 0.05 1.25 7.34 -51.93 -0.38 0.87 16 43 H 0.00 -0.03 8.03 -51.93 -0.42 -0.45 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 384.97 15.07 5.80 5.80 Total: -1.00 -32.17 384.97 -8.42 -40.58 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.47 Total: 0.44 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -0.07 Total: 8.44 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.09 Total: -50.89 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.61 Total: -24.05 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Atomic # 16 Polarization: 4.76 SS G_CDS: -2.14 Total: 2.62 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.17 -8.42 -40.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263924220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.208 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds