Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.46852 * 2 1 4 4 C 1.34885 * 116.99929 * 179.97438 * 3 2 1 5 5 O 1.21643 * 119.99961 * 359.97438 * 4 3 2 6 6 C 1.46435 * 120.00238 * 179.97438 * 4 3 2 7 7 C 1.44686 * 123.60757 * 359.97438 * 6 4 3 8 8 C 1.32503 * 113.16606 * 180.02562 * 7 6 4 9 9 C 1.50709 * 124.58085 * 180.02562 * 8 7 6 10 10 C 1.52992 * 109.47378 * 89.99858 * 9 8 7 11 11 S 1.75453 * 110.83923 * 0.26216 * 8 7 6 12 12 C 1.37182 * 123.61407 * 179.97438 * 6 4 3 13 13 N 1.38613 * 124.65747 * 0.02562 * 12 6 4 14 14 C 1.34785 * 119.99562 * 179.97438 * 13 12 6 15 15 O 1.21270 * 119.99975 * 359.97438 * 14 13 12 16 16 C 1.50695 * 119.99593 * 179.97438 * 14 13 12 17 17 N 1.46503 * 109.46695 * 180.02562 * 16 14 13 18 18 C 1.46496 * 120.00157 * 90.00504 * 17 16 14 19 19 C 1.36945 * 119.99904 * 269.99761 * 17 16 14 20 20 H 1.08003 * 119.99641 * 23.04304 * 19 17 16 21 21 C 1.38808 * 119.99849 * 203.04184 * 19 17 16 22 22 N 1.31621 * 120.00349 * 12.96432 * 21 19 17 23 23 Si 1.86796 * 119.99947 * 192.95625 * 21 19 17 24 24 H 1.48499 * 109.47139 * 90.00051 * 23 21 19 25 25 H 1.48495 * 109.47572 * 210.00190 * 23 21 19 26 26 H 1.48510 * 109.47116 * 330.00759 * 23 21 19 27 27 H 1.09004 * 109.46858 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47178 * 300.00169 * 1 2 3 29 29 H 1.08998 * 109.47037 * 60.00394 * 1 2 3 30 30 H 1.09000 * 109.47178 * 239.99831 * 2 1 3 31 31 H 1.08998 * 109.47037 * 119.99606 * 2 1 3 32 32 H 1.08001 * 123.41802 * 359.96336 * 7 6 4 33 33 H 1.09001 * 109.47129 * 329.99381 * 9 8 7 34 34 H 1.09000 * 109.46597 * 209.99818 * 9 8 7 35 35 H 1.08996 * 109.47234 * 180.02562 * 10 9 8 36 36 H 1.09010 * 109.46877 * 299.99969 * 10 9 8 37 37 H 1.09001 * 109.47380 * 59.99677 * 10 9 8 38 38 H 0.97001 * 120.00317 * 359.97438 * 13 12 6 39 39 H 1.09005 * 109.47363 * 300.00099 * 16 14 13 40 40 H 1.08997 * 109.47315 * 60.00115 * 16 14 13 41 41 H 1.08993 * 109.47622 * 95.11934 * 18 17 16 42 42 H 1.09006 * 109.46963 * 215.11781 * 18 17 16 43 43 H 1.09003 * 109.46874 * 335.11573 * 18 17 16 44 44 H 0.96992 * 120.00043 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3512 1.5458 0.0005 5 8 4.0922 0.5811 0.0015 6 6 3.9109 2.8989 0.0000 7 6 3.1035 4.0996 -0.0016 8 6 3.8235 5.2119 -0.0024 9 6 3.2466 6.6042 -0.0035 10 6 3.0511 7.0765 1.4385 11 16 5.5392 4.8449 -0.0086 12 6 5.2569 3.1640 0.0010 13 7 6.2506 2.1977 0.0021 14 6 7.5475 2.5648 0.0025 15 8 7.8449 3.7404 0.0014 16 6 8.6278 1.5142 0.0043 17 7 9.9408 2.1641 0.0051 18 6 10.5962 2.4898 1.2741 19 6 10.5556 2.4668 -1.1806 20 1 9.9679 2.5834 -2.0792 21 6 11.9340 2.6240 -1.2273 22 7 12.6753 2.2382 -0.2105 23 14 12.7369 3.3829 -2.7336 24 1 12.8242 4.8551 -2.5592 25 1 14.1017 2.8227 -2.9023 26 1 11.9229 3.0745 -3.9368 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0235 4.0901 -0.0032 33 1 2.2854 6.5988 -0.5176 34 1 3.9298 7.2801 -0.5178 35 1 2.6334 8.0833 1.4376 36 1 2.3678 6.4005 1.9527 37 1 4.0122 7.0819 1.9525 38 1 6.0127 1.2573 0.0026 39 1 8.5296 0.8934 0.8949 40 1 8.5307 0.8916 -0.8850 41 1 11.2840 1.6886 1.5441 42 1 11.1493 3.4232 1.1682 43 1 9.8429 2.6004 2.0541 44 1 13.6384 2.3477 -0.2434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263924220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = -92.894284 kcal Electronic energy + Delta-G solvation = -27119.738485 eV Core-core repulsion = 23163.834710 eV Total energy + Delta-G solvation = -3955.903775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.77688 -41.02435 -38.79977 -37.57110 -37.26198 -36.05106 -34.03250 -33.36791 -32.51470 -29.97644 -28.60947 -27.93594 -26.48155 -24.72748 -23.77439 -23.62107 -22.28423 -21.51885 -21.02369 -19.21423 -18.86738 -18.43376 -17.95794 -17.59302 -16.99077 -16.78409 -16.66772 -16.43217 -15.60643 -15.38053 -15.24825 -15.06712 -14.95347 -14.75412 -14.32919 -14.06242 -13.86019 -13.76337 -13.56143 -13.24327 -13.09726 -12.88980 -12.85173 -12.63280 -12.51276 -12.40723 -12.33995 -12.19396 -12.09338 -11.94174 -11.85089 -11.61990 -11.58619 -11.50976 -10.88519 -10.62652 -9.55142 -9.07763 -8.92836 -7.90432 -5.40454 -0.42941 0.18445 0.82522 1.00929 1.43126 1.46053 1.46658 1.54217 1.77833 1.82569 2.07317 2.47351 3.25199 3.55299 3.63529 3.87634 3.96105 4.03567 4.06313 4.10960 4.30933 4.38184 4.42107 4.50858 4.52180 4.56372 4.74376 4.85118 4.88484 4.95022 4.95090 5.04193 5.11791 5.14500 5.23010 5.26461 5.37887 5.41853 5.49705 5.55612 5.63844 6.08167 6.24793 6.66264 6.88769 7.05430 7.71641 8.14325 9.13206 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012208 B = 0.003094 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.047753 B = 9046.566536 C =10587.115829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 O -0.349 6.349 4 C 0.540 3.460 5 O -0.549 6.549 6 C -0.242 4.242 7 C -0.070 4.070 8 C -0.248 4.248 9 C -0.046 4.046 10 C -0.147 4.147 11 S 0.275 5.725 12 C 0.075 3.925 13 N -0.627 5.627 14 C 0.470 3.530 15 O -0.516 6.516 16 C 0.137 3.863 17 N -0.590 5.590 18 C 0.178 3.822 19 C -0.266 4.266 20 H 0.064 0.936 21 C -0.044 4.044 22 N -0.931 5.931 23 Si 0.969 3.031 24 H -0.290 1.290 25 H -0.288 1.288 26 H -0.269 1.269 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.173 0.827 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.432 0.568 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.022 0.978 42 H 0.013 0.987 43 H 0.024 0.976 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.278 1.644 2.212 27.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.266 6.266 4 C 0.388 3.612 5 O -0.443 6.443 6 C -0.261 4.261 7 C -0.096 4.096 8 C -0.365 4.365 9 C -0.085 4.085 10 C -0.205 4.205 11 S 0.537 5.463 12 C -0.146 4.146 13 N -0.277 5.277 14 C 0.256 3.744 15 O -0.390 6.390 16 C 0.006 3.994 17 N -0.310 5.310 18 C 0.033 3.967 19 C -0.396 4.396 20 H 0.082 0.918 21 C -0.240 4.240 22 N -0.577 5.577 23 Si 0.797 3.203 24 H -0.217 1.217 25 H -0.214 1.214 26 H -0.193 1.193 27 H 0.118 0.882 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.190 0.810 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.276 0.724 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.040 0.960 42 H 0.032 0.968 43 H 0.043 0.957 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -25.281 2.959 2.232 25.551 hybrid contribution -0.363 -1.330 -0.606 1.506 sum -25.644 1.629 1.625 25.747 Atomic orbital electron populations 1.21819 0.90139 1.04411 1.03787 1.23336 0.97168 0.78904 1.02645 1.86577 1.22248 1.33772 1.83967 1.20210 0.81066 0.88306 0.71653 1.90694 1.60688 1.43087 1.49799 1.19065 0.89821 0.92915 1.24274 1.20880 1.00993 0.87744 1.00026 1.25143 0.98369 1.00985 1.12021 1.20132 1.01490 0.88059 0.98826 1.21801 1.01740 1.01988 0.94994 1.84703 1.02225 0.90529 1.68880 1.22541 0.91482 0.99086 1.01479 1.43844 1.03915 1.10654 1.69256 1.24152 0.83309 0.93134 0.73771 1.90550 1.81054 1.20319 1.47117 1.20888 0.82691 0.91370 1.04497 1.43770 1.15485 1.68286 1.03448 1.20604 0.93449 0.98063 0.84595 1.19361 0.89828 1.42283 0.88085 0.91824 1.25729 0.96780 1.00976 1.00532 1.70199 1.04558 1.50176 1.32740 0.85251 0.77638 0.77877 0.79557 1.21675 1.21392 1.19333 0.88152 0.91149 0.91195 0.91343 0.91260 0.81010 0.88062 0.90642 0.90402 0.92147 0.93727 0.72386 0.87502 0.88075 0.95989 0.96812 0.95746 0.93915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 10.29 71.98 0.74 -0.71 16 2 C 0.05 0.89 6.20 71.98 0.45 1.34 16 3 O -0.35 -7.83 9.95 -57.99 -0.58 -8.40 16 4 C 0.54 14.90 7.91 69.96 0.55 15.45 16 5 O -0.55 -16.92 14.24 19.37 0.28 -16.65 16 6 C -0.24 -6.76 6.00 -19.75 -0.12 -6.88 16 7 C -0.07 -1.55 9.97 22.78 0.23 -1.33 16 8 C -0.25 -5.54 5.68 24.55 0.14 -5.40 16 9 C -0.05 -0.72 6.39 29.85 0.19 -0.53 16 10 C -0.15 -2.10 9.89 71.98 0.71 -1.39 16 11 S 0.27 8.26 19.93 -56.49 -1.13 7.13 16 12 C 0.08 2.40 6.98 83.37 0.58 2.98 16 13 N -0.63 -20.84 5.33 -309.04 -1.65 -22.48 16 14 C 0.47 18.32 7.86 87.65 0.69 19.01 16 15 O -0.52 -23.37 13.85 -3.00 -0.04 -23.41 16 16 C 0.14 5.42 6.12 85.63 0.52 5.95 16 17 N -0.59 -30.03 2.41 -731.31 -1.76 -31.80 16 18 C 0.18 9.01 8.98 127.77 1.15 10.16 16 19 C -0.27 -14.90 9.65 84.03 0.81 -14.09 16 20 H 0.06 3.54 7.86 -2.91 -0.02 3.52 16 21 C -0.04 -2.52 5.10 84.86 0.43 -2.09 16 22 N -0.93 -55.07 10.71 21.65 0.23 -54.84 16 23 Si 0.97 46.04 29.57 68.60 2.03 48.07 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 26 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 27 H 0.10 0.60 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.17 2.91 8.06 -2.91 -0.02 2.88 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.43 13.27 6.17 -92.71 -0.57 12.70 16 39 H 0.11 3.57 8.07 -2.38 -0.02 3.55 16 40 H 0.10 3.72 8.04 -2.39 -0.02 3.70 16 41 H 0.02 1.17 7.34 -2.39 -0.02 1.15 16 42 H 0.01 0.74 7.34 -2.38 -0.02 0.73 16 43 H 0.02 1.07 8.03 -2.39 -0.02 1.05 16 44 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -70.40 384.97 4.91 -65.49 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.44 Total: 14.40 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: 7.08 Total: 22.49 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -3.18 Total: -109.12 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -0.34 Total: -48.46 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 16 Polarization: 8.26 SS G_CDS: -1.13 Total: 7.13 kcal Total: -70.40 4.91 -65.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263924220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.403 kcal (2) G-P(sol) polarization free energy of solvation -70.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds