Wall clock time and date at job start Sat Apr 11 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40160 * 125.97629 * 180.16795 * 4 3 2 6 6 C 1.34774 * 119.99582 * 0.31868 * 5 4 3 7 7 O 1.21287 * 120.00652 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.99641 * 179.97438 * 6 5 4 9 9 O 1.42900 * 109.46929 * 180.02562 * 8 6 5 10 10 C 1.35701 * 117.00037 * 179.97438 * 9 8 6 11 11 C 1.38646 * 120.14897 * 0.02562 * 10 9 8 12 12 C 1.38102 * 120.09494 * 180.02562 * 11 10 9 13 13 C 1.38517 * 120.39188 * 359.97417 * 12 11 10 14 14 C 1.37820 * 120.29564 * 0.02562 * 13 12 11 15 15 C 1.39718 * 119.90122 * 359.69888 * 14 13 12 16 16 C 1.43203 * 120.19700 * 180.28044 * 15 14 13 17 17 N 8.39786 * 104.90323 * 0.21178 * 2 1 3 18 18 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 19 19 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 20 20 C 1.46500 * 125.97897 * 359.96594 * 19 2 1 21 21 C 1.50698 * 109.46965 * 89.99833 * 20 19 2 22 22 H 1.08000 * 120.00464 * 0.02562 * 21 20 19 23 23 C 1.37880 * 119.99358 * 180.02562 * 21 20 19 24 24 N 1.31506 * 120.00418 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99496 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47105 * 90.00179 * 25 23 21 27 27 H 1.48499 * 109.46684 * 210.00001 * 25 23 21 28 28 H 1.48496 * 109.47247 * 330.00058 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 32 32 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 33 33 H 0.96997 * 120.00211 * 180.31836 * 5 4 3 34 34 H 1.08995 * 109.46887 * 299.99916 * 8 6 5 35 35 H 1.08992 * 109.46796 * 60.00190 * 8 6 5 36 36 H 1.08005 * 119.95072 * 359.97438 * 11 10 9 37 37 H 1.08000 * 119.80636 * 179.97438 * 12 11 10 38 38 H 1.07998 * 119.85431 * 180.02562 * 13 12 11 39 39 H 1.07995 * 120.05360 * 180.02562 * 14 13 12 40 40 H 1.08994 * 109.46840 * 210.00162 * 20 19 2 41 41 H 1.09004 * 109.46443 * 329.99889 * 20 19 2 42 42 H 0.96998 * 120.00265 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7735 1.4748 0.0080 6 6 4.6367 2.8156 0.0157 7 8 3.5302 3.3124 0.0193 8 6 5.8587 3.6977 0.0211 9 8 5.4563 5.0688 0.0296 10 6 6.4430 6.0004 0.0358 11 6 7.7724 5.6067 0.0333 12 6 8.7757 6.5558 0.0402 13 6 8.4637 7.9053 0.0491 14 6 7.1477 8.3146 0.0517 15 6 6.1228 7.3651 0.0390 16 6 4.7533 7.7834 0.0355 17 7 3.6669 8.1153 0.0300 18 7 3.6337 -0.6577 -0.0036 19 7 2.3016 -1.0910 -0.0059 20 6 1.8500 -2.4847 -0.0128 21 6 1.6945 -2.9553 -1.4359 22 1 1.9108 -2.2836 -2.2535 23 6 1.2760 -4.2434 -1.6941 24 7 1.0121 -5.0611 -0.6985 25 14 1.0838 -4.8270 -3.4582 26 1 2.3645 -5.4139 -3.9277 27 1 0.0141 -5.8548 -3.5257 28 1 0.7200 -3.6763 -4.3235 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9719 2.1210 -0.0006 33 1 5.6584 1.0776 0.0055 34 1 6.4538 3.4885 0.9100 35 1 6.4541 3.4989 -0.8699 36 1 8.0237 4.5564 0.0268 37 1 9.8096 6.2439 0.0386 38 1 9.2552 8.6401 0.0540 39 1 6.9089 9.3678 0.0582 40 1 2.5849 -3.1072 0.4976 41 1 0.8916 -2.5584 0.5012 42 1 0.7173 -5.9671 -0.8802 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270994389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:49 Heat of formation + Delta-G solvation = 69.014270 kcal Electronic energy + Delta-G solvation = -27107.996077 eV Core-core repulsion = 23055.961983 eV Total energy + Delta-G solvation = -4052.034094 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.11654 -40.66533 -39.38834 -37.87065 -36.53375 -34.98017 -33.45639 -32.03259 -31.60260 -31.06055 -30.73393 -28.87216 -26.59877 -26.37382 -24.40910 -23.48047 -22.75487 -21.49315 -20.04432 -19.80413 -19.23310 -18.16733 -17.13591 -16.89566 -16.71711 -16.32483 -16.07113 -15.57192 -15.30275 -15.06797 -14.85849 -14.48658 -14.31647 -14.13093 -13.80733 -13.45598 -13.22492 -12.99662 -12.96318 -12.73270 -12.51070 -12.37479 -12.20912 -12.11189 -11.76158 -11.67131 -11.62934 -11.45113 -11.12369 -10.87189 -10.53351 -10.28739 -10.03899 -9.70193 -9.59209 -9.58095 -8.82819 -8.67837 -8.02361 -7.54676 -6.29036 -4.36901 0.31269 0.78908 1.96568 2.11329 2.53151 2.63684 2.80385 3.01947 3.19406 3.25793 3.30674 3.46047 3.58318 3.59607 3.73552 4.17252 4.27441 4.28731 4.42948 4.48905 4.57402 4.64547 4.75476 4.89076 5.04677 5.20586 5.37316 5.57024 5.63959 5.67064 5.84865 5.88086 6.04271 6.07219 6.14010 6.42722 6.45049 6.59902 6.70501 6.88659 7.00419 7.31367 7.35753 7.53081 7.63467 7.84679 7.98449 8.05160 8.56461 8.70714 9.29697 10.78257 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021652 B = 0.001925 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.890581 B =14538.198948 C =15113.468522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.094 3.906 3 C -0.290 4.290 4 C 0.262 3.738 5 N -0.625 5.625 6 C 0.518 3.482 7 O -0.488 6.488 8 C 0.045 3.955 9 O -0.281 6.281 10 C 0.178 3.822 11 C -0.212 4.212 12 C -0.048 4.048 13 C -0.159 4.159 14 C -0.032 4.032 15 C -0.057 4.057 16 C 0.256 3.744 17 N -0.408 5.408 18 N -0.317 5.317 19 N -0.315 5.315 20 C 0.258 3.742 21 C -0.537 4.537 22 H 0.064 0.936 23 C 0.066 3.934 24 N -0.891 5.891 25 Si 0.906 3.094 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.272 1.272 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.412 0.588 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.141 0.859 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.624 21.977 3.000 28.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.037 4.037 3 C -0.321 4.321 4 C 0.010 3.990 5 N -0.275 5.275 6 C 0.301 3.699 7 O -0.359 6.359 8 C -0.034 4.034 9 O -0.192 6.192 10 C 0.129 3.871 11 C -0.231 4.231 12 C -0.067 4.067 13 C -0.178 4.178 14 C -0.052 4.052 15 C -0.061 4.061 16 C -0.060 4.060 17 N -0.083 5.083 18 N -0.148 5.148 19 N -0.097 5.097 20 C 0.140 3.860 21 C -0.576 4.576 22 H 0.083 0.917 23 C -0.138 4.138 24 N -0.529 5.529 25 Si 0.733 3.267 26 H -0.203 1.203 27 H -0.209 1.209 28 H -0.196 1.196 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.177 0.823 33 H 0.247 0.753 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.159 0.841 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.519 21.523 3.040 26.709 hybrid contribution 0.648 -0.411 -0.941 1.214 sum 16.167 21.112 2.099 26.674 Atomic orbital electron populations 1.20395 0.87799 1.03973 1.02633 1.21075 0.95008 0.87049 1.00609 1.21263 0.89729 0.99908 1.21206 1.18867 0.86844 0.89551 1.03707 1.42125 1.07954 1.04390 1.73016 1.19823 0.90507 0.81702 0.77854 1.90743 1.26154 1.73470 1.45554 1.22488 0.96009 0.80055 1.04821 1.86164 1.31606 1.14135 1.87277 1.18987 0.87549 0.87661 0.92935 1.21268 0.90953 1.01439 1.09443 1.21214 0.99440 0.92606 0.93415 1.21029 0.96015 0.96267 1.04463 1.21068 0.91266 0.98810 0.94099 1.15311 0.86555 0.90200 1.14037 1.25292 0.92461 0.94084 0.94150 1.81249 1.10846 1.07724 1.08492 1.77246 1.00123 1.08259 1.29159 1.49022 1.00857 1.07861 1.51970 1.19718 0.96046 0.71196 0.99001 1.21314 1.46938 0.98013 0.91311 0.91729 1.24930 0.94630 0.96043 0.98172 1.69913 1.44783 1.07009 1.31162 0.86350 0.78030 0.78585 0.83704 1.20323 1.20852 1.19646 0.90985 0.89814 0.90543 0.82347 0.75273 0.87895 0.87872 0.84139 0.84740 0.84662 0.84194 0.92935 0.92701 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.55 9.89 36.01 0.36 -1.19 16 2 C 0.09 1.98 6.92 -82.28 -0.57 1.41 16 3 C -0.29 -5.96 9.52 -39.83 -0.38 -6.34 16 4 C 0.26 5.15 8.11 -154.38 -1.25 3.90 16 5 N -0.63 -8.74 5.45 -11.13 -0.06 -8.80 16 6 C 0.52 6.95 7.87 -10.98 -0.09 6.87 16 7 O -0.49 -8.88 13.63 -14.36 -0.20 -9.08 16 8 C 0.04 0.36 5.22 36.01 0.19 0.55 16 9 O -0.28 -3.07 9.10 -38.72 -0.35 -3.42 16 10 C 0.18 1.47 6.69 -38.71 -0.26 1.21 16 11 C -0.21 -1.05 9.03 -39.48 -0.36 -1.41 16 12 C -0.05 -0.17 10.03 -39.53 -0.40 -0.57 16 13 C -0.16 -0.57 10.02 -39.63 -0.40 -0.97 16 14 C -0.03 -0.17 9.76 -39.18 -0.38 -0.55 16 15 C -0.06 -0.48 5.75 -106.69 -0.61 -1.10 16 16 C 0.26 3.06 14.87 -22.47 -0.33 2.72 16 17 N -0.41 -6.03 18.54 41.84 0.78 -5.26 16 18 N -0.32 -7.09 12.59 31.44 0.40 -6.70 16 19 N -0.31 -7.35 3.59 -58.33 -0.21 -7.56 16 20 C 0.26 6.52 5.81 -5.19 -0.03 6.49 16 21 C -0.54 -14.62 9.39 -34.44 -0.32 -14.94 16 22 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 23 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -24.77 13.29 55.43 0.74 -24.03 16 25 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.16 3.24 5.92 -52.49 -0.31 2.93 16 33 H 0.41 4.12 8.82 -40.82 -0.36 3.76 16 34 H 0.10 0.47 7.66 -51.93 -0.40 0.07 16 35 H 0.10 0.49 7.66 -51.93 -0.40 0.09 16 36 H 0.14 0.36 6.30 -52.48 -0.33 0.03 16 37 H 0.13 0.14 8.06 -52.49 -0.42 -0.28 16 38 H 0.14 0.17 8.06 -52.49 -0.42 -0.26 16 39 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.06 1.38 7.65 -51.93 -0.40 0.98 16 42 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -36.47 377.83 -7.85 -44.31 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -4.68 Total: 1.18 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -4.93 Total: -2.24 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 1.64 Total: -52.35 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.55 Total: -12.50 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.47 -7.85 -44.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270994389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.328 kcal (2) G-P(sol) polarization free energy of solvation -36.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds