Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40160 * 125.97629 * 180.16795 * 4 3 2 6 6 C 1.34774 * 119.99582 * 0.31868 * 5 4 3 7 7 O 1.21287 * 120.00652 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.99641 * 179.97438 * 6 5 4 9 9 O 1.42900 * 109.46929 * 180.02562 * 8 6 5 10 10 C 1.35701 * 117.00037 * 179.97438 * 9 8 6 11 11 C 1.38646 * 120.14897 * 0.02562 * 10 9 8 12 12 C 1.38102 * 120.09494 * 180.02562 * 11 10 9 13 13 C 1.38517 * 120.39188 * 359.97417 * 12 11 10 14 14 C 1.37820 * 120.29564 * 0.02562 * 13 12 11 15 15 C 1.39718 * 119.90122 * 359.69888 * 14 13 12 16 16 C 1.43203 * 120.19700 * 180.28044 * 15 14 13 17 17 N 8.39786 * 104.90323 * 0.21178 * 2 1 3 18 18 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 19 19 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 20 20 C 1.46500 * 125.97897 * 359.96594 * 19 2 1 21 21 C 1.50698 * 109.46965 * 89.99833 * 20 19 2 22 22 H 1.08000 * 120.00464 * 0.02562 * 21 20 19 23 23 C 1.37880 * 119.99358 * 180.02562 * 21 20 19 24 24 N 1.31506 * 120.00418 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99496 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47105 * 90.00179 * 25 23 21 27 27 H 1.48499 * 109.46684 * 210.00001 * 25 23 21 28 28 H 1.48496 * 109.47247 * 330.00058 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 32 32 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 33 33 H 0.96997 * 120.00211 * 180.31836 * 5 4 3 34 34 H 1.08995 * 109.46887 * 299.99916 * 8 6 5 35 35 H 1.08992 * 109.46796 * 60.00190 * 8 6 5 36 36 H 1.08005 * 119.95072 * 359.97438 * 11 10 9 37 37 H 1.08000 * 119.80636 * 179.97438 * 12 11 10 38 38 H 1.07998 * 119.85431 * 180.02562 * 13 12 11 39 39 H 1.07995 * 120.05360 * 180.02562 * 14 13 12 40 40 H 1.08994 * 109.46840 * 210.00162 * 20 19 2 41 41 H 1.09004 * 109.46443 * 329.99889 * 20 19 2 42 42 H 0.96998 * 120.00265 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7735 1.4748 0.0080 6 6 4.6367 2.8156 0.0157 7 8 3.5302 3.3124 0.0193 8 6 5.8587 3.6977 0.0211 9 8 5.4563 5.0688 0.0296 10 6 6.4430 6.0004 0.0358 11 6 7.7724 5.6067 0.0333 12 6 8.7757 6.5558 0.0402 13 6 8.4637 7.9053 0.0491 14 6 7.1477 8.3146 0.0517 15 6 6.1228 7.3651 0.0390 16 6 4.7533 7.7834 0.0355 17 7 3.6669 8.1153 0.0300 18 7 3.6337 -0.6577 -0.0036 19 7 2.3016 -1.0910 -0.0059 20 6 1.8500 -2.4847 -0.0128 21 6 1.6945 -2.9553 -1.4359 22 1 1.9108 -2.2836 -2.2535 23 6 1.2760 -4.2434 -1.6941 24 7 1.0121 -5.0611 -0.6985 25 14 1.0838 -4.8270 -3.4582 26 1 2.3645 -5.4139 -3.9277 27 1 0.0141 -5.8548 -3.5257 28 1 0.7200 -3.6763 -4.3235 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9719 2.1210 -0.0006 33 1 5.6584 1.0776 0.0055 34 1 6.4538 3.4885 0.9100 35 1 6.4541 3.4989 -0.8699 36 1 8.0237 4.5564 0.0268 37 1 9.8096 6.2439 0.0386 38 1 9.2552 8.6401 0.0540 39 1 6.9089 9.3678 0.0582 40 1 2.5849 -3.1072 0.4976 41 1 0.8916 -2.5584 0.5012 42 1 0.7173 -5.9671 -0.8802 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270994389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = 45.675888 kcal Electronic energy + Delta-G solvation = -27109.008105 eV Core-core repulsion = 23055.961983 eV Total energy + Delta-G solvation = -4053.046122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.39202 -41.54544 -40.47401 -38.51751 -37.40110 -36.40668 -35.35422 -33.22119 -32.71413 -32.41986 -31.32431 -29.76278 -28.32423 -27.92540 -25.12802 -24.84075 -23.70958 -22.52513 -21.38044 -20.94141 -20.24424 -18.82378 -18.74100 -18.09401 -17.66844 -17.58954 -17.11438 -16.80303 -16.37843 -16.09488 -15.89547 -15.58425 -15.35436 -15.25222 -14.81877 -14.71850 -14.35018 -14.11115 -13.97206 -13.86325 -13.71416 -13.70047 -13.56261 -13.28806 -13.16532 -12.86605 -12.70520 -12.50739 -12.27741 -12.17692 -12.10225 -12.07003 -11.61399 -11.40239 -10.98176 -10.74716 -9.98262 -9.64510 -9.28880 -9.20528 -8.34322 -6.51777 -0.14755 0.42837 0.81891 1.00335 1.30369 1.37392 1.38564 1.49738 1.66903 1.88808 1.99699 2.11070 2.32752 2.53329 2.91201 2.94707 2.95698 3.32818 3.80492 3.90914 3.98108 4.09093 4.09737 4.10909 4.32588 4.41223 4.47668 4.51585 4.69724 4.71826 4.84832 4.91367 4.92493 4.97353 5.08383 5.20287 5.21672 5.39013 5.52119 5.54605 5.73526 5.79167 5.86256 6.12296 6.20856 6.26072 6.52248 6.59805 6.88771 7.04778 7.19191 8.71834 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021652 B = 0.001925 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.890581 B =14538.198948 C =15113.468522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.088 3.912 3 C -0.304 4.304 4 C 0.275 3.725 5 N -0.613 5.613 6 C 0.515 3.485 7 O -0.542 6.542 8 C 0.053 3.947 9 O -0.323 6.323 10 C 0.160 3.840 11 C -0.208 4.208 12 C -0.036 4.036 13 C -0.152 4.152 14 C -0.030 4.030 15 C -0.092 4.092 16 C 0.277 3.723 17 N -0.480 5.480 18 N -0.349 5.349 19 N -0.341 5.341 20 C 0.275 3.725 21 C -0.553 4.553 22 H 0.049 0.951 23 C 0.023 3.977 24 N -0.917 5.917 25 Si 0.971 3.029 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.159 0.841 33 H 0.432 0.568 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.170 0.830 37 H 0.170 0.830 38 H 0.166 0.834 39 H 0.153 0.847 40 H 0.028 0.972 41 H 0.051 0.949 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.175 22.757 2.349 31.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C -0.335 4.335 4 C 0.020 3.980 5 N -0.265 5.265 6 C 0.302 3.698 7 O -0.416 6.416 8 C -0.024 4.024 9 O -0.235 6.235 10 C 0.112 3.888 11 C -0.227 4.227 12 C -0.055 4.055 13 C -0.170 4.170 14 C -0.051 4.051 15 C -0.096 4.096 16 C -0.037 4.037 17 N -0.157 5.157 18 N -0.179 5.179 19 N -0.123 5.123 20 C 0.156 3.844 21 C -0.592 4.592 22 H 0.067 0.933 23 C -0.178 4.178 24 N -0.555 5.555 25 Si 0.795 3.205 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.177 0.823 33 H 0.272 0.728 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.188 0.812 37 H 0.187 0.813 38 H 0.183 0.817 39 H 0.170 0.830 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 19.121 22.318 2.398 29.487 hybrid contribution -0.277 -0.517 -0.689 0.905 sum 18.845 21.801 1.709 28.868 Atomic orbital electron populations 1.20502 0.85559 1.04319 1.04114 1.21699 0.96624 0.86523 0.99371 1.21410 0.90490 0.99692 1.21885 1.19209 0.88532 0.89208 1.01008 1.42240 1.07323 1.04378 1.72580 1.20992 0.91816 0.81447 0.75522 1.90719 1.28874 1.74238 1.47750 1.22662 0.92885 0.78114 1.08749 1.86089 1.33837 1.15417 1.88152 1.19201 0.88438 0.86776 0.94388 1.21614 0.89377 1.03380 1.08288 1.21709 1.00797 0.92175 0.90788 1.21447 0.95668 0.97351 1.02488 1.21307 0.91409 0.98953 0.93394 1.15666 0.85228 0.91489 1.17265 1.26061 0.93136 0.92330 0.92165 1.81235 1.12870 1.10023 1.11581 1.77167 0.99927 1.09628 1.31215 1.48807 1.01755 1.07486 1.54254 1.19274 0.95010 0.72275 0.97834 1.21422 1.47640 0.98371 0.91721 0.93258 1.25723 0.93939 0.95912 1.02225 1.69992 1.44965 1.07442 1.33084 0.85362 0.78343 0.78141 0.78692 1.19772 1.19598 1.19601 0.88868 0.91192 0.88324 0.82327 0.72826 0.83600 0.83779 0.81246 0.81257 0.81663 0.82955 0.95398 0.93102 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.02 9.89 71.24 0.70 -2.32 16 2 C 0.09 3.80 6.92 41.38 0.29 4.09 16 3 C -0.30 -12.73 9.52 22.11 0.21 -12.52 16 4 C 0.27 10.84 8.11 133.33 1.08 11.92 16 5 N -0.61 -16.39 5.45 -307.50 -1.68 -18.07 16 6 C 0.52 13.27 7.87 87.66 0.69 13.96 16 7 O -0.54 -20.06 13.63 15.99 0.22 -19.84 16 8 C 0.05 0.68 5.22 71.24 0.37 1.06 16 9 O -0.32 -6.67 9.10 -71.18 -0.65 -7.32 16 10 C 0.16 2.32 6.69 22.84 0.15 2.48 16 11 C -0.21 -1.13 9.03 22.33 0.20 -0.93 16 12 C -0.04 -0.06 10.03 22.30 0.22 0.16 16 13 C -0.15 -0.42 10.02 22.24 0.22 -0.20 16 14 C -0.03 -0.25 9.76 22.53 0.22 -0.03 16 15 C -0.09 -1.50 5.75 -21.21 -0.12 -1.62 16 16 C 0.28 7.00 14.87 88.33 1.31 8.32 16 17 N -0.48 -15.36 18.54 19.01 0.35 -15.01 16 18 N -0.35 -15.91 12.59 -54.44 -0.69 -16.60 16 19 N -0.34 -16.42 3.59 -338.45 -1.22 -17.64 16 20 C 0.27 14.45 5.81 85.63 0.50 14.95 16 21 C -0.55 -30.86 9.39 25.60 0.24 -30.62 16 22 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 23 C 0.02 1.26 5.46 84.66 0.46 1.72 16 24 N -0.92 -51.44 13.29 21.45 0.28 -51.15 16 25 Si 0.97 42.87 29.54 68.60 2.03 44.89 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 28 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 29 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.07 2.63 7.71 -2.39 -0.02 2.61 16 31 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16 32 H 0.16 6.68 5.92 -2.91 -0.02 6.66 16 33 H 0.43 7.67 8.82 -92.71 -0.82 6.85 16 34 H 0.15 0.63 7.66 -2.39 -0.02 0.61 16 35 H 0.14 0.69 7.66 -2.39 -0.02 0.67 16 36 H 0.17 -0.16 6.30 -2.91 -0.02 -0.18 16 37 H 0.17 -0.80 8.06 -2.91 -0.02 -0.83 16 38 H 0.17 -0.49 8.06 -2.91 -0.02 -0.51 16 39 H 0.15 0.76 8.06 -2.91 -0.02 0.73 16 40 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.05 2.66 7.65 -2.39 -0.02 2.64 16 42 H 0.27 14.34 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -86.00 377.83 5.69 -80.32 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.27 Total: 10.02 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 6.76 Total: 10.40 kcal Atomic # 7 Polarization: -115.53 SS G_CDS: -2.94 Total: -118.47 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.43 Total: -27.16 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -86.00 5.69 -80.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270994389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.996 kcal (2) G-P(sol) polarization free energy of solvation -86.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds