Wall clock time and date at job start Sat Apr 11 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40162 * 125.97631 * 180.13084 * 4 3 2 6 6 C 1.34779 * 119.99437 * 0.31570 * 5 4 3 7 7 O 1.21291 * 120.00483 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99258 * 180.02562 * 6 5 4 9 9 O 1.42906 * 109.46597 * 179.97438 * 8 6 5 10 10 C 1.35759 * 116.99620 * 179.97438 * 9 8 6 11 11 C 1.38959 * 119.90414 * 359.72704 * 10 9 8 12 12 C 1.37742 * 120.09107 * 179.72281 * 11 10 9 13 13 C 1.39757 * 119.90369 * 0.54578 * 12 11 10 14 14 C 1.43194 * 120.09200 * 179.70450 * 13 12 11 15 15 N 9.89535 * 141.29874 * 180.02562 * 5 1 2 16 16 C 1.39759 * 119.80912 * 359.72664 * 13 12 11 17 17 C 1.37730 * 119.90817 * 359.97438 * 16 13 12 18 18 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 19 19 N 1.34968 * 126.07013 * 180.30992 * 2 1 3 20 20 C 1.46509 * 125.97450 * 359.96761 * 19 2 1 21 21 C 1.50698 * 109.47025 * 89.99735 * 20 19 2 22 22 H 1.08000 * 120.00464 * 0.02562 * 21 20 19 23 23 C 1.37880 * 119.99358 * 179.97438 * 21 20 19 24 24 N 1.31522 * 119.99698 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00426 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.46895 * 89.99951 * 25 23 21 27 27 H 1.48496 * 109.46922 * 209.99736 * 25 23 21 28 28 H 1.48503 * 109.46783 * 329.99868 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 32 32 H 1.07995 * 126.06990 * 359.97438 * 3 2 1 33 33 H 0.96991 * 120.00083 * 180.30991 * 5 4 3 34 34 H 1.08995 * 109.47288 * 299.99182 * 8 6 5 35 35 H 1.08990 * 109.47540 * 60.00048 * 8 6 5 36 36 H 1.08000 * 119.95859 * 359.97438 * 11 10 9 37 37 H 1.07996 * 120.04404 * 180.25136 * 12 11 10 38 38 H 1.08000 * 120.04565 * 179.97438 * 16 13 12 39 39 H 1.07995 * 119.95644 * 179.97438 * 17 16 13 40 40 H 1.08994 * 109.46750 * 210.00045 * 20 19 2 41 41 H 1.09004 * 109.46474 * 329.99737 * 20 19 2 42 42 H 0.96998 * 119.99850 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7736 1.4749 0.0072 6 6 4.6367 2.8157 0.0141 7 8 3.5302 3.3124 0.0166 8 6 5.8587 3.6977 0.0175 9 8 5.4562 5.0689 0.0242 10 6 6.4434 6.0008 0.0285 11 6 7.7741 5.6005 0.0322 12 6 8.7788 6.5428 0.0308 13 6 8.4582 7.9031 0.0373 14 6 9.4995 8.8860 0.0423 15 7 10.3255 9.6659 0.0502 16 6 7.1186 8.3012 0.0394 17 6 6.1202 7.3524 0.0345 18 7 3.6337 -0.6577 -0.0036 19 7 2.3017 -1.0909 -0.0059 20 6 1.8500 -2.4847 -0.0128 21 6 1.6945 -2.9553 -1.4359 22 1 1.9108 -2.2836 -2.2535 23 6 1.2770 -4.2437 -1.6941 24 7 1.1407 -4.6543 -2.9361 25 14 0.9035 -5.4056 -0.2799 26 1 -0.5276 -5.2823 0.0972 27 1 1.1865 -6.8019 -0.6987 28 1 1.7546 -5.0562 0.8857 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9719 2.1210 -0.0004 33 1 5.6584 1.0776 0.0049 34 1 6.4547 3.4893 0.9060 35 1 6.4532 3.4983 -0.8739 36 1 8.0210 4.5491 0.0319 37 1 9.8127 6.2307 0.0295 38 1 6.8665 9.3513 0.0449 39 1 5.0847 7.6591 0.0365 40 1 2.5849 -3.1072 0.4976 41 1 0.8916 -2.5584 0.5012 42 1 0.8466 -5.5606 -3.1177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271110601.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:55 Heat of formation + Delta-G solvation = 72.771416 kcal Electronic energy + Delta-G solvation = -26699.017671 eV Core-core repulsion = 22647.146499 eV Total energy + Delta-G solvation = -4051.871171 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.13423 -40.71394 -39.47622 -38.20067 -36.50958 -35.06196 -33.42029 -31.98346 -31.69487 -31.26909 -31.04952 -29.07766 -27.02811 -26.49575 -23.97593 -23.68134 -22.66913 -21.56693 -20.02160 -19.56521 -19.30594 -18.72413 -17.22119 -17.16741 -16.87641 -16.39769 -16.11553 -15.43902 -15.18616 -15.10327 -14.60837 -14.52384 -14.31518 -14.25931 -14.10565 -13.85130 -13.46858 -13.23886 -12.93100 -12.85005 -12.62900 -12.59733 -12.48296 -12.35814 -12.06956 -11.65455 -11.54434 -11.49866 -11.26987 -10.86631 -10.65503 -10.13110 -10.04260 -9.78830 -9.71302 -9.65254 -8.83690 -8.81376 -8.12268 -7.61787 -6.31479 -4.35297 0.30466 0.71248 1.94614 2.04129 2.26203 2.47043 2.70024 2.96398 3.10969 3.18755 3.20316 3.35574 3.46480 3.50863 3.63850 4.08212 4.16707 4.22049 4.33179 4.45974 4.54993 4.57478 4.84189 4.94769 4.96296 5.25676 5.35367 5.43315 5.52477 5.63781 5.75147 5.77327 5.96472 5.96746 6.04841 6.28051 6.34825 6.43419 6.49871 6.64681 6.71983 7.08283 7.21782 7.22608 7.41492 7.75715 7.97656 8.24839 8.44303 8.73497 9.23331 10.80870 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.032763 B = 0.001647 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.422104 B =16993.144502 C =17438.044619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.097 3.903 3 C -0.287 4.287 4 C 0.266 3.734 5 N -0.626 5.626 6 C 0.520 3.480 7 O -0.490 6.490 8 C 0.044 3.956 9 O -0.280 6.280 10 C 0.165 3.835 11 C -0.215 4.215 12 C -0.025 4.025 13 C -0.075 4.075 14 C 0.259 3.741 15 N -0.425 5.425 16 C -0.028 4.028 17 C -0.148 4.148 18 N -0.314 5.314 19 N -0.314 5.314 20 C 0.231 3.769 21 C -0.543 4.543 22 H 0.081 0.919 23 C 0.080 3.920 24 N -0.885 5.885 25 Si 0.872 3.128 26 H -0.270 1.270 27 H -0.279 1.279 28 H -0.263 1.263 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.162 0.838 33 H 0.413 0.587 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.051 0.949 41 H 0.047 0.953 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.485 19.699 8.122 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.034 4.034 3 C -0.317 4.317 4 C 0.014 3.986 5 N -0.275 5.275 6 C 0.304 3.696 7 O -0.361 6.361 8 C -0.035 4.035 9 O -0.191 6.191 10 C 0.118 3.882 11 C -0.233 4.233 12 C -0.046 4.046 13 C -0.079 4.079 14 C -0.056 4.056 15 N -0.101 5.101 16 C -0.048 4.048 17 C -0.167 4.167 18 N -0.145 5.145 19 N -0.097 5.097 20 C 0.112 3.888 21 C -0.582 4.582 22 H 0.099 0.901 23 C -0.125 4.125 24 N -0.522 5.522 25 Si 0.698 3.302 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.188 1.188 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.179 0.821 33 H 0.248 0.752 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.159 0.841 39 H 0.164 0.836 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.372 19.974 8.008 24.339 hybrid contribution -0.188 -0.856 0.460 0.989 sum 11.184 19.118 8.467 23.712 Atomic orbital electron populations 1.20425 0.87700 1.04315 1.02568 1.21080 0.95018 0.86885 1.00403 1.21270 0.89634 0.99941 1.20890 1.18870 0.86955 0.89496 1.03305 1.42146 1.07945 1.04466 1.72972 1.19836 0.90532 0.81633 0.77641 1.90722 1.26166 1.73500 1.45719 1.22467 0.95875 0.80362 1.04777 1.86160 1.31714 1.13942 1.87313 1.19350 0.87056 0.89463 0.92362 1.21241 0.91449 1.01021 1.09614 1.20958 0.99870 0.90385 0.93378 1.15925 0.89399 0.89932 1.12612 1.25647 0.93184 0.93273 0.93465 1.81280 1.09770 1.09471 1.09551 1.20991 0.89936 1.00059 0.93847 1.20406 1.01076 0.89060 1.06166 1.77257 0.99577 1.08438 1.29189 1.48545 1.01152 1.07115 1.52838 1.20022 0.95354 0.73607 0.99780 1.21168 1.47617 0.99077 0.90289 0.90084 1.24808 0.94423 0.97446 0.95783 1.69873 1.45442 1.18377 1.18485 0.86907 0.79472 0.81044 0.82749 1.19568 1.20467 1.18809 0.90976 0.89760 0.90252 0.82090 0.75186 0.88020 0.87947 0.84086 0.84545 0.84138 0.83620 0.93152 0.93562 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 9.89 36.01 0.36 -1.09 16 2 C 0.10 1.90 6.92 -82.28 -0.57 1.33 16 3 C -0.29 -5.45 9.52 -39.83 -0.38 -5.83 16 4 C 0.27 4.90 8.11 -154.38 -1.25 3.65 16 5 N -0.63 -8.03 5.45 -11.13 -0.06 -8.09 16 6 C 0.52 6.20 7.87 -10.98 -0.09 6.12 16 7 O -0.49 -7.91 13.63 -14.36 -0.20 -8.10 16 8 C 0.04 0.29 5.21 36.01 0.19 0.48 16 9 O -0.28 -2.48 9.66 -38.90 -0.38 -2.85 16 10 C 0.17 1.10 6.69 -39.04 -0.26 0.84 16 11 C -0.21 -1.01 9.01 -39.50 -0.36 -1.36 16 12 C -0.03 -0.12 9.75 -39.20 -0.38 -0.50 16 13 C -0.07 -0.43 5.74 -106.84 -0.61 -1.04 16 14 C 0.26 2.03 15.33 -22.48 -0.34 1.68 16 15 N -0.43 -4.44 18.54 41.84 0.78 -3.66 16 16 C -0.03 -0.14 9.75 -39.20 -0.38 -0.52 16 17 C -0.15 -0.87 9.97 -39.50 -0.39 -1.26 16 18 N -0.31 -6.68 12.59 31.44 0.40 -6.28 16 19 N -0.31 -6.93 3.59 -58.32 -0.21 -7.14 16 20 C 0.23 5.34 4.88 -5.19 -0.03 5.31 16 21 C -0.54 -14.74 9.94 -34.44 -0.34 -15.08 16 22 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 23 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 24 N -0.89 -25.67 13.96 55.43 0.77 -24.90 16 25 Si 0.87 19.52 27.47 -169.99 -4.67 14.85 16 26 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.43 7.71 -51.93 -0.40 1.03 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.16 2.99 5.92 -52.49 -0.31 2.68 16 33 H 0.41 3.76 8.82 -40.82 -0.36 3.40 16 34 H 0.10 0.36 7.64 -51.93 -0.40 -0.03 16 35 H 0.10 0.40 7.66 -51.93 -0.40 0.01 16 36 H 0.14 0.33 6.28 -52.49 -0.33 0.00 16 37 H 0.14 0.39 8.06 -52.49 -0.42 -0.04 16 38 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.05 1.17 7.20 -51.93 -0.37 0.80 16 41 H 0.05 0.98 7.08 -51.93 -0.37 0.61 16 42 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 LS Contribution 374.82 15.07 5.65 5.65 Total: -1.00 -35.82 374.82 -7.50 -43.32 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -4.64 Total: 2.42 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -4.94 Total: -5.20 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 1.67 Total: -50.07 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -0.57 Total: -10.96 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.67 Total: 14.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.82 -7.50 -43.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271110601.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.086 kcal (2) G-P(sol) polarization free energy of solvation -35.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds