Wall clock time and date at job start Sat Apr 11 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40424 * 107.86568 * 179.84878 * 3 2 1 5 5 N 1.40091 * 125.97363 * 180.16817 * 4 3 2 6 6 C 1.34776 * 120.00325 * 0.32152 * 5 4 3 7 7 O 1.21601 * 119.99749 * 359.97438 * 6 5 4 8 8 C 1.47509 * 119.99924 * 180.02562 * 6 5 4 9 9 C 1.39716 * 120.19654 * 359.97438 * 8 6 5 10 10 C 1.37788 * 119.90781 * 179.97438 * 9 8 6 11 11 C 1.38546 * 120.29942 * 0.02562 * 10 9 8 12 12 C 1.38060 * 120.39487 * 0.02562 * 11 10 9 13 13 C 1.38702 * 120.08458 * 359.69690 * 12 11 10 14 14 O 1.35660 * 120.14994 * 180.29602 * 13 12 11 15 15 C 1.42890 * 117.00114 * 0.27693 * 14 13 12 16 16 C 1.47198 * 109.47140 * 179.97438 * 15 14 13 17 17 N 7.83608 * 92.90824 * 0.13257 * 2 1 3 18 18 N 1.31229 * 108.04913 * 0.41799 * 4 3 2 19 19 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 20 20 C 1.46503 * 125.97339 * 359.97438 * 19 2 1 21 21 C 1.50699 * 109.46808 * 90.00128 * 20 19 2 22 22 H 1.07995 * 120.00443 * 359.97438 * 21 20 19 23 23 C 1.37881 * 119.99491 * 179.97438 * 21 20 19 24 24 N 1.31515 * 119.99834 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00328 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47140 * 89.99413 * 25 23 21 27 27 H 1.48492 * 109.47014 * 209.99919 * 25 23 21 28 28 H 1.48502 * 109.46845 * 329.99556 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 32 32 H 1.08003 * 126.06492 * 359.97438 * 3 2 1 33 33 H 0.97010 * 120.00037 * 180.32420 * 5 4 3 34 34 H 1.08000 * 120.03943 * 0.02562 * 9 8 6 35 35 H 1.07997 * 119.84837 * 180.02562 * 10 9 8 36 36 H 1.08005 * 119.80452 * 179.97438 * 11 10 9 37 37 H 1.08004 * 119.95770 * 179.97438 * 12 11 10 38 38 H 1.09002 * 109.47640 * 300.00509 * 15 14 13 39 39 H 1.09010 * 109.47336 * 60.00293 * 15 14 13 40 40 H 1.08997 * 109.46890 * 209.99586 * 20 19 2 41 41 H 1.08999 * 109.46830 * 329.99997 * 20 19 2 42 42 H 0.96999 * 120.00540 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0035 5 7 4.7730 1.4744 0.0080 6 6 4.6363 2.8152 0.0158 7 8 3.5270 3.3132 0.0185 8 6 5.8324 3.6785 0.0199 9 6 7.1089 3.1106 0.0163 10 6 8.2221 3.9227 0.0197 11 6 8.0819 5.3010 0.0272 12 6 6.8264 5.8753 0.0319 13 6 5.6948 5.0733 0.0228 14 8 4.4606 5.6363 0.0213 15 6 4.3987 7.0639 0.0233 16 6 2.9910 7.4940 0.0206 17 7 1.9046 7.8260 0.0181 18 7 3.6337 -0.6578 -0.0035 19 7 2.3016 -1.0910 -0.0059 20 6 1.8499 -2.4846 -0.0129 21 6 1.6945 -2.9551 -1.4362 22 1 1.9102 -2.2832 -2.2537 23 6 1.2769 -4.2435 -1.6946 24 7 1.1409 -4.6540 -2.9366 25 14 0.9031 -5.4056 -0.2806 26 1 -0.5279 -5.2821 0.0964 27 1 1.1861 -6.8018 -0.6994 28 1 1.7541 -5.0564 0.8852 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9718 2.1210 -0.0004 33 1 5.6581 1.0772 0.0055 34 1 7.2229 2.0367 0.0101 35 1 9.2084 3.4827 0.0165 36 1 8.9599 5.9299 0.0302 37 1 6.7253 6.9506 0.0381 38 1 4.8948 7.4479 0.9147 39 1 4.8980 7.4505 -0.8653 40 1 2.5847 -3.1073 0.4973 41 1 0.8914 -2.5584 0.5009 42 1 0.8467 -5.5602 -3.1185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271173205.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:58 Heat of formation + Delta-G solvation = 80.613399 kcal Electronic energy + Delta-G solvation = -27783.326503 eV Core-core repulsion = 23731.795386 eV Total energy + Delta-G solvation = -4051.531118 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.14355 -40.54561 -39.06566 -37.91546 -36.64248 -34.86868 -33.35513 -32.11904 -31.30273 -31.00501 -30.76072 -28.88463 -27.15603 -26.38361 -24.58521 -23.03138 -22.41536 -21.41179 -19.81499 -19.59654 -18.73132 -18.45057 -17.18572 -17.10148 -16.78297 -16.39817 -15.76063 -15.36266 -15.31273 -15.17533 -14.89907 -14.46024 -13.97682 -13.86602 -13.79468 -13.64796 -13.26808 -13.18609 -12.73750 -12.67663 -12.56393 -12.38671 -12.25851 -12.18318 -11.96351 -11.66565 -11.52974 -11.52621 -11.16040 -10.80155 -10.55028 -9.98172 -9.93291 -9.59570 -9.55139 -9.51237 -8.78024 -8.74016 -7.97425 -7.45709 -6.25694 -4.28877 0.45792 0.91711 1.71997 2.31540 2.45043 2.69336 2.86159 3.04287 3.15313 3.23545 3.24205 3.37231 3.56674 3.75026 3.83077 4.20910 4.22136 4.30828 4.41653 4.52195 4.58890 4.75361 4.88867 5.02408 5.04227 5.27222 5.40802 5.62692 5.66576 5.79182 5.89508 5.97667 6.05184 6.17545 6.22392 6.38642 6.48016 6.57115 6.61446 6.76709 6.80001 7.06492 7.29583 7.40694 7.60962 7.87306 8.27050 8.32282 8.58569 8.80253 9.29473 10.86815 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.002476 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.204934 B =11305.450993 C =12669.064436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.095 3.905 3 C -0.285 4.285 4 C 0.270 3.730 5 N -0.629 5.629 6 C 0.563 3.437 7 O -0.493 6.493 8 C -0.157 4.157 9 C -0.046 4.046 10 C -0.160 4.160 11 C -0.052 4.052 12 C -0.219 4.219 13 C 0.187 3.813 14 O -0.272 6.272 15 C 0.154 3.846 16 C 0.209 3.791 17 N -0.390 5.390 18 N -0.318 5.318 19 N -0.317 5.317 20 C 0.232 3.768 21 C -0.541 4.541 22 H 0.081 0.919 23 C 0.079 3.921 24 N -0.887 5.887 25 Si 0.872 3.128 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.263 1.263 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.161 0.839 33 H 0.408 0.592 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.194 22.497 8.159 28.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.036 4.036 3 C -0.316 4.316 4 C 0.017 3.983 5 N -0.277 5.277 6 C 0.349 3.651 7 O -0.366 6.366 8 C -0.161 4.161 9 C -0.064 4.064 10 C -0.179 4.179 11 C -0.070 4.070 12 C -0.238 4.238 13 C 0.139 3.861 14 O -0.183 6.183 15 C 0.076 3.924 16 C -0.110 4.110 17 N -0.069 5.069 18 N -0.148 5.148 19 N -0.099 5.099 20 C 0.113 3.887 21 C -0.579 4.579 22 H 0.099 0.901 23 C -0.125 4.125 24 N -0.524 5.524 25 Si 0.698 3.302 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.188 1.188 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.179 0.821 33 H 0.244 0.756 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.204 21.923 8.030 26.822 hybrid contribution 0.499 -0.388 0.462 0.783 sum 13.703 21.534 8.491 26.900 Atomic orbital electron populations 1.20408 0.87850 1.04196 1.02462 1.21057 0.94914 0.86960 1.00671 1.21287 0.89704 0.99897 1.20718 1.18912 0.87203 0.89479 1.02691 1.42321 1.07471 1.04933 1.73005 1.17873 0.88957 0.80904 0.77354 1.90791 1.25588 1.73548 1.46662 1.19226 0.93732 0.90497 1.12633 1.21287 0.90580 1.00449 0.94119 1.21055 0.98944 0.93560 1.04291 1.21154 0.96800 0.95108 0.93959 1.21244 0.92103 1.00124 1.10308 1.18814 0.83553 0.91011 0.92680 1.86401 1.25510 1.18927 1.87414 1.19826 0.86059 0.81373 1.05159 1.28178 0.94149 0.94865 0.93798 1.81261 1.10474 1.07066 1.08069 1.77245 0.99421 1.08553 1.29616 1.48506 1.01239 1.06993 1.53169 1.19988 0.95281 0.73765 0.99686 1.21189 1.47349 0.99016 0.90371 0.90085 1.24811 0.94488 0.97459 0.95768 1.69873 1.45657 1.18346 1.18475 0.86905 0.79455 0.80998 0.82816 1.19611 1.20507 1.18777 0.91080 0.89837 0.90363 0.82115 0.75592 0.84538 0.84905 0.84982 0.84310 0.87154 0.87135 0.93208 0.93669 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.57 9.89 36.01 0.36 -1.21 16 2 C 0.09 2.01 6.92 -82.28 -0.57 1.44 16 3 C -0.29 -5.96 9.52 -39.83 -0.38 -6.34 16 4 C 0.27 5.51 8.11 -154.44 -1.25 4.26 16 5 N -0.63 -9.83 5.40 -12.08 -0.07 -9.90 16 6 C 0.56 8.47 7.73 -12.48 -0.10 8.37 16 7 O -0.49 -9.04 12.28 -16.60 -0.20 -9.24 16 8 C -0.16 -1.68 5.89 -104.85 -0.62 -2.30 16 9 C -0.05 -0.35 9.54 -39.19 -0.37 -0.73 16 10 C -0.16 -0.90 10.02 -39.63 -0.40 -1.30 16 11 C -0.05 -0.24 10.03 -39.53 -0.40 -0.64 16 12 C -0.22 -1.15 9.03 -39.48 -0.36 -1.51 16 13 C 0.19 1.69 6.70 -38.69 -0.26 1.43 16 14 O -0.27 -2.78 8.17 -40.56 -0.33 -3.11 16 15 C 0.15 0.81 5.21 34.37 0.18 0.98 16 16 C 0.21 1.95 15.82 -20.76 -0.33 1.62 16 17 N -0.39 -4.95 18.54 42.15 0.78 -4.17 16 18 N -0.32 -7.26 12.59 31.43 0.40 -6.87 16 19 N -0.32 -7.44 3.59 -58.33 -0.21 -7.64 16 20 C 0.23 5.62 4.88 -5.19 -0.03 5.59 16 21 C -0.54 -15.22 9.94 -34.44 -0.34 -15.57 16 22 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 23 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 24 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 25 Si 0.87 20.18 27.47 -169.99 -4.67 15.51 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.16 3.32 5.91 -52.48 -0.31 3.01 16 33 H 0.41 5.00 6.85 -40.82 -0.28 4.72 16 34 H 0.14 0.84 6.40 -52.49 -0.34 0.50 16 35 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 36 H 0.13 0.26 8.06 -52.48 -0.42 -0.17 16 37 H 0.14 0.24 6.30 -52.48 -0.33 -0.09 16 38 H 0.11 0.19 7.65 -51.93 -0.40 -0.21 16 39 H 0.11 0.21 7.68 -51.92 -0.40 -0.19 16 40 H 0.05 1.21 7.20 -51.93 -0.37 0.84 16 41 H 0.05 1.01 7.07 -51.93 -0.37 0.64 16 42 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 368.98 15.07 5.56 5.56 Total: -1.00 -38.17 368.98 -7.40 -45.57 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.47 Total: 3.72 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -4.96 Total: -3.78 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 1.68 Total: -54.24 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -0.54 Total: -12.35 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.67 Total: 15.51 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.17 -7.40 -45.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271173205.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.185 kcal (2) G-P(sol) polarization free energy of solvation -38.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds