Wall clock time and date at job start Sat Apr 11 2020 05:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40424 * 107.86568 * 179.84878 * 3 2 1 5 5 N 1.40091 * 125.97363 * 180.16817 * 4 3 2 6 6 C 1.34776 * 120.00325 * 0.32152 * 5 4 3 7 7 O 1.21601 * 119.99749 * 359.97438 * 6 5 4 8 8 C 1.47509 * 119.99924 * 180.02562 * 6 5 4 9 9 C 1.39716 * 120.19654 * 359.97438 * 8 6 5 10 10 C 1.37788 * 119.90781 * 179.97438 * 9 8 6 11 11 C 1.38546 * 120.29942 * 0.02562 * 10 9 8 12 12 C 1.38060 * 120.39487 * 0.02562 * 11 10 9 13 13 C 1.38702 * 120.08458 * 359.69690 * 12 11 10 14 14 O 1.35660 * 120.14994 * 180.29602 * 13 12 11 15 15 C 1.42890 * 117.00114 * 0.27693 * 14 13 12 16 16 C 1.47198 * 109.47140 * 179.97438 * 15 14 13 17 17 N 7.83608 * 92.90824 * 0.13257 * 2 1 3 18 18 N 1.31229 * 108.04913 * 0.41799 * 4 3 2 19 19 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 20 20 C 1.46503 * 125.97339 * 359.97438 * 19 2 1 21 21 C 1.50699 * 109.46808 * 90.00128 * 20 19 2 22 22 H 1.07995 * 120.00443 * 359.97438 * 21 20 19 23 23 C 1.37881 * 119.99491 * 179.97438 * 21 20 19 24 24 N 1.31515 * 119.99834 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00328 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47140 * 89.99413 * 25 23 21 27 27 H 1.48492 * 109.47014 * 209.99919 * 25 23 21 28 28 H 1.48502 * 109.46845 * 329.99556 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 32 32 H 1.08003 * 126.06492 * 359.97438 * 3 2 1 33 33 H 0.97010 * 120.00037 * 180.32420 * 5 4 3 34 34 H 1.08000 * 120.03943 * 0.02562 * 9 8 6 35 35 H 1.07997 * 119.84837 * 180.02562 * 10 9 8 36 36 H 1.08005 * 119.80452 * 179.97438 * 11 10 9 37 37 H 1.08004 * 119.95770 * 179.97438 * 12 11 10 38 38 H 1.09002 * 109.47640 * 300.00509 * 15 14 13 39 39 H 1.09010 * 109.47336 * 60.00293 * 15 14 13 40 40 H 1.08997 * 109.46890 * 209.99586 * 20 19 2 41 41 H 1.08999 * 109.46830 * 329.99997 * 20 19 2 42 42 H 0.96999 * 120.00540 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0035 5 7 4.7730 1.4744 0.0080 6 6 4.6363 2.8152 0.0158 7 8 3.5270 3.3132 0.0185 8 6 5.8324 3.6785 0.0199 9 6 7.1089 3.1106 0.0163 10 6 8.2221 3.9227 0.0197 11 6 8.0819 5.3010 0.0272 12 6 6.8264 5.8753 0.0319 13 6 5.6948 5.0733 0.0228 14 8 4.4606 5.6363 0.0213 15 6 4.3987 7.0639 0.0233 16 6 2.9910 7.4940 0.0206 17 7 1.9046 7.8260 0.0181 18 7 3.6337 -0.6578 -0.0035 19 7 2.3016 -1.0910 -0.0059 20 6 1.8499 -2.4846 -0.0129 21 6 1.6945 -2.9551 -1.4362 22 1 1.9102 -2.2832 -2.2537 23 6 1.2769 -4.2435 -1.6946 24 7 1.1409 -4.6540 -2.9366 25 14 0.9031 -5.4056 -0.2806 26 1 -0.5279 -5.2821 0.0964 27 1 1.1861 -6.8018 -0.6994 28 1 1.7541 -5.0564 0.8852 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9718 2.1210 -0.0004 33 1 5.6581 1.0772 0.0055 34 1 7.2229 2.0367 0.0101 35 1 9.2084 3.4827 0.0165 36 1 8.9599 5.9299 0.0302 37 1 6.7253 6.9506 0.0381 38 1 4.8948 7.4479 0.9147 39 1 4.8980 7.4505 -0.8653 40 1 2.5847 -3.1073 0.4973 41 1 0.8914 -2.5584 0.5009 42 1 0.8467 -5.5602 -3.1185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271173205.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:57 Heat of formation + Delta-G solvation = 54.748648 kcal Electronic energy + Delta-G solvation = -27784.448083 eV Core-core repulsion = 23731.795386 eV Total energy + Delta-G solvation = -4052.652697 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.39992 -41.55829 -40.14131 -38.53645 -37.42104 -36.34113 -35.25753 -33.46127 -32.83571 -32.17980 -31.27685 -29.48092 -28.91630 -27.92799 -25.58222 -24.34557 -23.40891 -22.49238 -21.26644 -20.91964 -19.41598 -19.24329 -19.16827 -18.10257 -17.73091 -17.28173 -17.17209 -16.58528 -16.29465 -16.13640 -16.01118 -15.58217 -15.44991 -14.93469 -14.65759 -14.60012 -14.51931 -14.42761 -14.01461 -13.91257 -13.78307 -13.69145 -13.32659 -13.30112 -13.16425 -12.88618 -12.64455 -12.55861 -12.28578 -12.09174 -11.94610 -11.84866 -11.59880 -11.42813 -10.90573 -10.83779 -10.04031 -9.62526 -9.29118 -9.08395 -8.41396 -6.52902 -0.16752 0.45497 0.96217 1.09151 1.27842 1.34715 1.39790 1.48320 1.58178 1.63913 2.22004 2.26129 2.30123 2.47017 2.90219 2.90764 3.03175 3.51256 3.82213 3.86938 3.98871 4.05396 4.19129 4.27460 4.36550 4.39371 4.47170 4.52880 4.55121 4.71575 4.75365 4.79746 4.92144 4.95374 5.07871 5.13465 5.21760 5.26380 5.39665 5.55108 5.77539 5.85164 5.97606 6.19756 6.31537 6.35271 6.42493 6.50953 6.94501 7.11012 7.11601 8.75421 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.002476 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.204934 B =11305.450993 C =12669.064436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.091 3.909 3 C -0.301 4.301 4 C 0.278 3.722 5 N -0.624 5.624 6 C 0.559 3.441 7 O -0.534 6.534 8 C -0.193 4.193 9 C -0.052 4.052 10 C -0.160 4.160 11 C -0.038 4.038 12 C -0.208 4.208 13 C 0.177 3.823 14 O -0.313 6.313 15 C 0.147 3.853 16 C 0.234 3.766 17 N -0.464 5.464 18 N -0.353 5.353 19 N -0.342 5.342 20 C 0.242 3.758 21 C -0.552 4.552 22 H 0.022 0.978 23 C 0.022 3.978 24 N -0.938 5.938 25 Si 0.952 3.048 26 H -0.251 1.251 27 H -0.277 1.277 28 H -0.244 1.244 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.161 0.839 33 H 0.422 0.578 34 H 0.141 0.859 35 H 0.158 0.842 36 H 0.172 0.828 37 H 0.182 0.818 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.760 24.145 10.185 31.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 C -0.331 4.331 4 C 0.023 3.977 5 N -0.275 5.275 6 C 0.350 3.650 7 O -0.410 6.410 8 C -0.197 4.197 9 C -0.071 4.071 10 C -0.178 4.178 11 C -0.056 4.056 12 C -0.226 4.226 13 C 0.130 3.870 14 O -0.224 6.224 15 C 0.071 3.929 16 C -0.084 4.084 17 N -0.144 5.144 18 N -0.183 5.183 19 N -0.124 5.124 20 C 0.122 3.878 21 C -0.590 4.590 22 H 0.041 0.959 23 C -0.178 4.178 24 N -0.576 5.576 25 Si 0.772 3.228 26 H -0.175 1.175 27 H -0.202 1.202 28 H -0.167 1.167 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.179 0.821 33 H 0.261 0.739 34 H 0.159 0.841 35 H 0.175 0.825 36 H 0.189 0.811 37 H 0.199 0.801 38 H 0.173 0.827 39 H 0.170 0.830 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.810 23.606 10.060 30.140 hybrid contribution -0.116 -0.687 -0.268 0.747 sum 15.695 22.919 9.791 29.453 Atomic orbital electron populations 1.20539 0.85253 1.04358 1.04481 1.21721 0.96667 0.86396 0.99165 1.21430 0.90246 0.99866 1.21586 1.19277 0.88745 0.89247 1.00412 1.42505 1.06846 1.05099 1.73003 1.18755 0.90182 0.80529 0.75584 1.90745 1.27605 1.74014 1.48612 1.19085 0.92643 0.90937 1.17062 1.21424 0.90205 1.01207 0.94235 1.21424 0.99100 0.94224 1.03071 1.21700 0.97908 0.95029 0.90913 1.21695 0.90763 1.01838 1.08353 1.19037 0.84309 0.90619 0.93065 1.86314 1.26890 1.21494 1.87741 1.20497 0.83764 0.79475 1.09206 1.29064 0.94828 0.93006 0.91525 1.81269 1.12783 1.09470 1.10840 1.77159 0.99685 1.09750 1.31725 1.48442 1.01854 1.07054 1.55083 1.19786 0.96452 0.74504 0.97048 1.21251 1.47866 0.98762 0.91109 0.95925 1.25847 0.93663 0.99242 0.99057 1.70035 1.46859 1.19257 1.21439 0.85666 0.80480 0.77671 0.78952 1.17495 1.20218 1.16710 0.87979 0.91109 0.88680 0.82126 0.73937 0.84100 0.82451 0.81105 0.80099 0.82745 0.82957 0.93074 0.91023 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.03 9.89 71.24 0.70 -2.33 16 2 C 0.09 3.94 6.92 41.38 0.29 4.22 16 3 C -0.30 -13.09 9.52 22.11 0.21 -12.88 16 4 C 0.28 11.83 8.11 133.35 1.08 12.91 16 5 N -0.62 -20.36 5.40 -310.40 -1.68 -22.04 16 6 C 0.56 17.50 7.73 86.69 0.67 18.17 16 7 O -0.53 -20.57 12.28 16.88 0.21 -20.36 16 8 C -0.19 -4.05 5.89 -20.01 -0.12 -4.17 16 9 C -0.05 -0.73 9.54 22.52 0.21 -0.51 16 10 C -0.16 -1.20 10.02 22.24 0.22 -0.97 16 11 C -0.04 -0.15 10.03 22.30 0.22 0.08 16 12 C -0.21 -1.18 9.03 22.34 0.20 -0.98 16 13 C 0.18 2.84 6.70 22.85 0.15 2.99 16 14 O -0.31 -6.00 8.17 -68.84 -0.56 -6.57 16 15 C 0.15 1.10 5.21 70.18 0.37 1.46 16 16 C 0.23 4.22 15.82 89.44 1.41 5.63 16 17 N -0.46 -12.18 18.54 20.01 0.37 -11.81 16 18 N -0.35 -16.76 12.59 -54.48 -0.69 -17.45 16 19 N -0.34 -16.53 3.59 -338.45 -1.22 -17.74 16 20 C 0.24 11.83 4.88 85.63 0.42 12.24 16 21 C -0.55 -32.32 9.94 25.60 0.25 -32.07 16 22 H 0.02 1.54 8.06 -2.91 -0.02 1.52 16 23 C 0.02 1.23 5.47 84.66 0.46 1.69 16 24 N -0.94 -57.76 13.96 21.45 0.30 -57.46 16 25 Si 0.95 41.31 27.47 68.60 1.88 43.19 16 26 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 27 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 28 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 29 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.07 2.61 7.71 -2.39 -0.02 2.60 16 31 H 0.09 2.90 8.14 -2.38 -0.02 2.88 16 32 H 0.16 6.98 5.91 -2.91 -0.02 6.97 16 33 H 0.42 10.79 6.85 -92.70 -0.64 10.15 16 34 H 0.14 1.65 6.40 -2.91 -0.02 1.63 16 35 H 0.16 0.39 8.06 -2.91 -0.02 0.37 16 36 H 0.17 -0.56 8.06 -2.91 -0.02 -0.59 16 37 H 0.18 -0.60 6.30 -2.91 -0.02 -0.62 16 38 H 0.16 -0.21 7.65 -2.39 -0.02 -0.23 16 39 H 0.15 -0.14 7.68 -2.38 -0.02 -0.15 16 40 H 0.05 2.47 7.20 -2.39 -0.02 2.45 16 41 H 0.07 3.10 7.07 -2.39 -0.02 3.09 16 42 H 0.27 15.51 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -92.55 368.98 5.80 -86.75 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.41 Total: 18.00 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 6.77 Total: 5.49 kcal Atomic # 7 Polarization: -123.60 SS G_CDS: -2.91 Total: -126.50 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.35 Total: -26.93 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 1.88 Total: 43.19 kcal Total: -92.55 5.80 -86.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271173205.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.501 kcal (2) G-P(sol) polarization free energy of solvation -92.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds