Wall clock time and date at job start Sat Apr 11 2020 05:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35245 * 126.07280 * 2 1 4 4 C 1.40373 * 107.87591 * 180.15640 * 3 2 1 5 5 N 1.40405 * 125.97235 * 179.82485 * 4 3 2 6 6 C 1.33787 * 124.17497 * 4.69310 * 5 4 3 7 7 O 1.21543 * 123.77320 * 0.03050 * 6 5 4 8 8 N 1.34526 * 112.45754 * 180.02562 * 6 5 4 9 9 C 1.47303 * 106.61837 * 359.97438 * 8 6 5 10 10 H 1.09000 * 110.59961 * 118.68111 * 9 8 6 11 11 C 1.50702 * 110.60360 * 241.47433 * 9 8 6 12 12 C 1.38234 * 120.00257 * 218.55082 * 11 9 8 13 13 C 1.38238 * 119.99675 * 180.25732 * 12 11 9 14 14 C 1.38228 * 120.00110 * 359.52133 * 13 12 11 15 15 C 1.38234 * 120.00090 * 0.43562 * 14 13 12 16 16 C 1.38235 * 119.99522 * 38.52095 * 11 9 8 17 17 C 1.34757 * 124.17719 * 184.72886 * 5 4 3 18 18 O 1.21242 * 127.16069 * 0.02562 * 17 5 4 19 19 N 1.31200 * 108.05986 * 359.56051 * 4 3 2 20 20 N 1.34962 * 126.07759 * 179.67430 * 2 1 3 21 21 C 1.46506 * 125.98125 * 359.97438 * 20 2 1 22 22 C 1.50699 * 109.47142 * 270.00693 * 21 20 2 23 23 H 1.08000 * 119.99808 * 359.97438 * 22 21 20 24 24 C 1.37878 * 119.99871 * 179.97438 * 22 21 20 25 25 N 1.31507 * 119.99907 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 120.00135 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47332 * 89.99919 * 26 24 22 28 28 H 1.48506 * 109.47282 * 210.00364 * 26 24 22 29 29 H 1.48505 * 109.46916 * 330.00219 * 26 24 22 30 30 H 1.08993 * 109.47236 * 270.32355 * 1 2 3 31 31 H 1.08998 * 109.46914 * 30.32938 * 1 2 3 32 32 H 1.09002 * 109.46470 * 150.32400 * 1 2 3 33 33 H 1.08009 * 126.06194 * 359.97305 * 3 2 1 34 34 H 0.96997 * 126.69132 * 179.97438 * 8 6 5 35 35 H 1.08002 * 119.99744 * 359.97115 * 12 11 9 36 36 H 1.08004 * 119.99577 * 179.72816 * 13 12 11 37 37 H 1.07998 * 119.99898 * 180.21654 * 14 13 12 38 38 H 1.08001 * 120.00324 * 179.78918 * 15 14 13 39 39 H 1.07996 * 120.00471 * 0.02562 * 16 11 9 40 40 H 1.09005 * 109.46751 * 30.00043 * 21 20 2 41 41 H 1.08994 * 109.47256 * 150.00043 * 21 20 2 42 42 H 0.97005 * 120.00240 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6368 0.6548 -0.0036 5 7 4.7752 1.4767 -0.0083 6 6 4.7390 2.8111 0.0806 7 8 3.7121 3.4543 0.1758 8 7 5.9662 3.3615 0.0531 9 6 6.9241 2.2491 -0.0683 10 1 7.4987 2.3367 -0.9904 11 6 7.8432 2.2079 1.1253 12 6 9.1790 1.8940 0.9587 13 6 10.0208 1.8511 2.0543 14 6 9.5289 2.1318 3.3153 15 6 8.1933 2.4466 3.4818 16 6 7.3504 2.4848 2.3868 17 6 6.0390 1.0189 -0.1036 18 8 6.3943 -0.1364 -0.1984 19 7 3.6337 -0.6572 0.0038 20 7 2.3017 -1.0908 0.0062 21 6 1.8504 -2.4846 0.0147 22 6 1.6961 -2.9540 1.4383 23 1 1.9129 -2.2815 2.2551 24 6 1.2780 -4.2419 1.6981 25 7 1.1438 -4.6517 2.9404 26 14 0.9024 -5.4048 0.2853 27 1 2.1346 -6.1449 -0.0877 28 1 -0.1468 -6.3690 0.7034 29 1 0.4207 -4.6248 -0.8831 30 1 -0.3633 0.0058 1.0276 31 1 -0.3633 0.8870 -0.5189 32 1 -0.3632 -0.8929 -0.5088 33 1 1.9720 2.1212 -0.0004 34 1 6.1788 4.3065 0.1035 35 1 9.5640 1.6777 -0.0270 36 1 11.0636 1.6015 1.9247 37 1 10.1874 2.1017 4.1708 38 1 7.8082 2.6626 4.4674 39 1 6.3067 2.7302 2.5171 40 1 0.8916 -2.5591 -0.4984 41 1 2.5850 -3.1074 -0.4957 42 1 0.8493 -5.5577 3.1232 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272161913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:01 Heat of formation + Delta-G solvation = 79.881965 kcal Electronic energy + Delta-G solvation = -28858.361616 eV Core-core repulsion = 24806.798781 eV Total energy + Delta-G solvation = -4051.562835 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.76022 -40.55673 -39.36284 -38.54157 -36.23788 -35.20454 -33.40768 -31.92058 -31.53676 -31.22951 -31.11451 -27.72164 -27.04411 -26.58909 -23.89673 -23.24183 -22.86975 -22.12557 -21.31816 -19.78637 -18.91638 -17.84021 -17.59373 -17.14957 -16.97533 -16.47492 -15.93009 -15.56694 -15.40459 -15.30870 -15.14960 -14.62258 -14.15489 -14.01333 -13.90257 -13.70152 -13.48872 -13.32578 -12.99025 -12.64366 -12.60933 -12.37903 -11.98705 -11.72324 -11.67260 -11.39336 -11.34062 -10.96762 -10.80357 -10.68759 -10.44505 -10.10660 -9.86627 -9.83787 -9.65280 -9.21422 -9.09332 -8.79035 -8.25995 -7.76006 -6.27098 -4.30726 0.85803 1.10884 1.57393 1.93138 2.35672 2.79751 2.84943 3.15587 3.20769 3.22894 3.32372 3.54259 3.59563 3.97124 4.14153 4.20880 4.41478 4.70195 4.77945 4.84088 4.95776 5.02254 5.17383 5.18493 5.27962 5.45013 5.59598 5.62928 5.72191 5.88109 5.97448 6.11494 6.15886 6.21243 6.22202 6.26739 6.42773 6.52860 6.53907 6.64610 6.64844 6.93654 7.17140 7.26165 7.44096 7.71547 8.03491 8.27656 8.36006 8.77368 9.27381 10.85354 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013025 B = 0.003212 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.179728 B = 8715.554764 C = 9904.808031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.100 3.900 3 C -0.277 4.277 4 C 0.257 3.743 5 N -0.487 5.487 6 C 0.712 3.288 7 O -0.523 6.523 8 N -0.719 5.719 9 C 0.143 3.857 10 H 0.138 0.862 11 C -0.103 4.103 12 C -0.091 4.091 13 C -0.120 4.120 14 C -0.108 4.108 15 C -0.117 4.117 16 C -0.094 4.094 17 C 0.520 3.480 18 O -0.421 6.421 19 N -0.272 5.272 20 N -0.311 5.311 21 C 0.230 3.770 22 C -0.542 4.542 23 H 0.081 0.919 24 C 0.080 3.920 25 N -0.885 5.885 26 Si 0.874 3.126 27 H -0.270 1.270 28 H -0.279 1.279 29 H -0.264 1.264 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.158 0.842 34 H 0.443 0.557 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.535 17.695 -5.410 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.030 4.030 3 C -0.308 4.308 4 C 0.006 3.994 5 N -0.230 5.230 6 C 0.412 3.588 7 O -0.394 6.394 8 N -0.384 5.384 9 C 0.034 3.966 10 H 0.155 0.845 11 C -0.105 4.105 12 C -0.110 4.110 13 C -0.138 4.138 14 C -0.126 4.126 15 C -0.135 4.135 16 C -0.112 4.112 17 C 0.304 3.696 18 O -0.284 6.284 19 N -0.101 5.101 20 N -0.094 5.094 21 C 0.111 3.889 22 C -0.580 4.580 23 H 0.099 0.901 24 C -0.124 4.124 25 N -0.522 5.522 26 Si 0.700 3.300 27 H -0.195 1.195 28 H -0.205 1.205 29 H -0.189 1.189 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.175 0.825 34 H 0.288 0.712 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.741 15.945 -5.304 21.707 hybrid contribution -0.418 0.286 -0.400 0.645 sum 13.323 16.231 -5.704 21.759 Atomic orbital electron populations 1.20384 0.87255 1.02993 1.03748 1.21026 0.95124 0.86592 1.00299 1.20898 0.88962 0.99920 1.21036 1.18579 0.85086 0.89626 1.06105 1.42824 1.06600 1.07133 1.66408 1.15533 0.84848 0.80643 0.77800 1.90993 1.31412 1.63620 1.53392 1.45429 1.04376 1.09287 1.79347 1.20852 0.90875 0.84978 0.99914 0.84511 1.19416 0.93886 1.03972 0.93180 1.20987 0.92160 0.98136 0.99675 1.21147 1.00006 1.00151 0.92525 1.21276 0.95627 0.98179 0.97501 1.21174 0.93728 0.99823 0.98791 1.21017 1.00051 0.98259 0.91884 1.20767 0.82390 0.90293 0.76148 1.90884 1.77373 1.18125 1.42048 1.77602 0.98860 1.07919 1.25722 1.48785 1.01146 1.07442 1.52003 1.20098 0.95467 0.73307 1.00008 1.21135 1.47572 0.99187 0.90143 0.90064 1.24789 0.94407 0.97404 0.95809 1.69867 1.45522 1.18354 1.18436 0.86895 0.79041 0.81551 0.82560 1.19544 1.20487 1.18855 0.89783 0.90420 0.90842 0.82471 0.71179 0.85270 0.85488 0.85704 0.85530 0.86028 0.92884 0.93363 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 10.11 36.00 0.36 -0.99 16 2 C 0.10 2.03 6.93 -82.28 -0.57 1.46 16 3 C -0.28 -5.51 9.79 -39.84 -0.39 -5.90 16 4 C 0.26 5.43 7.68 -154.17 -1.18 4.25 16 5 N -0.49 -8.45 2.83 -65.79 -0.19 -8.64 16 6 C 0.71 10.39 8.58 -88.02 -0.75 9.64 16 7 O -0.52 -8.86 15.49 5.33 0.08 -8.78 16 8 N -0.72 -6.85 5.50 -60.33 -0.33 -7.18 16 9 C 0.14 1.43 3.89 -69.36 -0.27 1.16 16 10 H 0.14 0.90 8.04 -51.93 -0.42 0.48 16 11 C -0.10 -1.04 5.07 -104.62 -0.53 -1.57 16 12 C -0.09 -0.78 9.68 -39.58 -0.38 -1.16 16 13 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 14 C -0.11 -0.90 10.05 -39.59 -0.40 -1.30 16 15 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 16 C -0.09 -1.01 9.32 -39.58 -0.37 -1.38 16 17 C 0.52 8.27 7.56 -10.56 -0.08 8.19 16 18 O -0.42 -8.23 17.17 5.59 0.10 -8.13 16 19 N -0.27 -6.56 11.74 31.48 0.37 -6.19 16 20 N -0.31 -7.29 3.59 -58.32 -0.21 -7.50 16 21 C 0.23 5.57 5.06 -5.19 -0.03 5.54 16 22 C -0.54 -15.29 9.94 -34.44 -0.34 -15.63 16 23 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 24 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 25 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 26 Si 0.87 20.26 27.47 -169.99 -4.67 15.59 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.13 7.07 -51.93 -0.37 0.76 16 33 H 0.16 2.90 6.52 -52.48 -0.34 2.56 16 34 H 0.44 2.78 8.96 -40.82 -0.37 2.41 16 35 H 0.13 0.82 8.05 -52.49 -0.42 0.39 16 36 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 37 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.12 1.39 7.71 -52.49 -0.40 0.99 16 40 H 0.05 1.17 6.09 -51.93 -0.32 0.86 16 41 H 0.05 1.18 7.57 -51.93 -0.39 0.79 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 364.56 15.07 5.49 5.49 Total: -1.00 -36.20 364.56 -9.14 -45.34 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -4.73 Total: 4.06 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -5.83 Total: 1.58 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.42 Total: -55.15 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.18 Total: -16.91 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.67 Total: 15.59 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.20 -9.14 -45.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272161913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.225 kcal (2) G-P(sol) polarization free energy of solvation -36.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds