Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35245 * 126.07280 * 2 1 4 4 C 1.40373 * 107.87591 * 180.15640 * 3 2 1 5 5 N 1.40405 * 125.97235 * 179.82485 * 4 3 2 6 6 C 1.33787 * 124.17497 * 4.69310 * 5 4 3 7 7 O 1.21543 * 123.77320 * 0.03050 * 6 5 4 8 8 N 1.34526 * 112.45754 * 180.02562 * 6 5 4 9 9 C 1.47303 * 106.61837 * 359.97438 * 8 6 5 10 10 H 1.09000 * 110.59961 * 118.68111 * 9 8 6 11 11 C 1.50702 * 110.60360 * 241.47433 * 9 8 6 12 12 C 1.38234 * 120.00257 * 218.55082 * 11 9 8 13 13 C 1.38238 * 119.99675 * 180.25732 * 12 11 9 14 14 C 1.38228 * 120.00110 * 359.52133 * 13 12 11 15 15 C 1.38234 * 120.00090 * 0.43562 * 14 13 12 16 16 C 1.38235 * 119.99522 * 38.52095 * 11 9 8 17 17 C 1.34757 * 124.17719 * 184.72886 * 5 4 3 18 18 O 1.21242 * 127.16069 * 0.02562 * 17 5 4 19 19 N 1.31200 * 108.05986 * 359.56051 * 4 3 2 20 20 N 1.34962 * 126.07759 * 179.67430 * 2 1 3 21 21 C 1.46506 * 125.98125 * 359.97438 * 20 2 1 22 22 C 1.50699 * 109.47142 * 270.00693 * 21 20 2 23 23 H 1.08000 * 119.99808 * 359.97438 * 22 21 20 24 24 C 1.37878 * 119.99871 * 179.97438 * 22 21 20 25 25 N 1.31507 * 119.99907 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 120.00135 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47332 * 89.99919 * 26 24 22 28 28 H 1.48506 * 109.47282 * 210.00364 * 26 24 22 29 29 H 1.48505 * 109.46916 * 330.00219 * 26 24 22 30 30 H 1.08993 * 109.47236 * 270.32355 * 1 2 3 31 31 H 1.08998 * 109.46914 * 30.32938 * 1 2 3 32 32 H 1.09002 * 109.46470 * 150.32400 * 1 2 3 33 33 H 1.08009 * 126.06194 * 359.97305 * 3 2 1 34 34 H 0.96997 * 126.69132 * 179.97438 * 8 6 5 35 35 H 1.08002 * 119.99744 * 359.97115 * 12 11 9 36 36 H 1.08004 * 119.99577 * 179.72816 * 13 12 11 37 37 H 1.07998 * 119.99898 * 180.21654 * 14 13 12 38 38 H 1.08001 * 120.00324 * 179.78918 * 15 14 13 39 39 H 1.07996 * 120.00471 * 0.02562 * 16 11 9 40 40 H 1.09005 * 109.46751 * 30.00043 * 21 20 2 41 41 H 1.08994 * 109.47256 * 150.00043 * 21 20 2 42 42 H 0.97005 * 120.00240 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6368 0.6548 -0.0036 5 7 4.7752 1.4767 -0.0083 6 6 4.7390 2.8111 0.0806 7 8 3.7121 3.4543 0.1758 8 7 5.9662 3.3615 0.0531 9 6 6.9241 2.2491 -0.0683 10 1 7.4987 2.3367 -0.9904 11 6 7.8432 2.2079 1.1253 12 6 9.1790 1.8940 0.9587 13 6 10.0208 1.8511 2.0543 14 6 9.5289 2.1318 3.3153 15 6 8.1933 2.4466 3.4818 16 6 7.3504 2.4848 2.3868 17 6 6.0390 1.0189 -0.1036 18 8 6.3943 -0.1364 -0.1984 19 7 3.6337 -0.6572 0.0038 20 7 2.3017 -1.0908 0.0062 21 6 1.8504 -2.4846 0.0147 22 6 1.6961 -2.9540 1.4383 23 1 1.9129 -2.2815 2.2551 24 6 1.2780 -4.2419 1.6981 25 7 1.1438 -4.6517 2.9404 26 14 0.9024 -5.4048 0.2853 27 1 2.1346 -6.1449 -0.0877 28 1 -0.1468 -6.3690 0.7034 29 1 0.4207 -4.6248 -0.8831 30 1 -0.3633 0.0058 1.0276 31 1 -0.3633 0.8870 -0.5189 32 1 -0.3632 -0.8929 -0.5088 33 1 1.9720 2.1212 -0.0004 34 1 6.1788 4.3065 0.1035 35 1 9.5640 1.6777 -0.0270 36 1 11.0636 1.6015 1.9247 37 1 10.1874 2.1017 4.1708 38 1 7.8082 2.6626 4.4674 39 1 6.3067 2.7302 2.5171 40 1 0.8916 -2.5591 -0.4984 41 1 2.5850 -3.1074 -0.4957 42 1 0.8493 -5.5577 3.1232 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272161913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = 55.315053 kcal Electronic energy + Delta-G solvation = -28859.426917 eV Core-core repulsion = 24806.798781 eV Total energy + Delta-G solvation = -4052.628136 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.95892 -42.12838 -40.19046 -39.76542 -37.41982 -36.56624 -35.31733 -33.47381 -32.94161 -32.40008 -31.84130 -29.42957 -28.16475 -28.04168 -25.46673 -24.39395 -23.73185 -23.57497 -22.27349 -21.24275 -20.38305 -19.28871 -18.94214 -18.63967 -18.16809 -17.67133 -17.16662 -16.89467 -16.66896 -16.46452 -16.17214 -16.09772 -15.69440 -15.38950 -15.02802 -14.77752 -14.59607 -14.44920 -14.24879 -14.05506 -13.83615 -13.73839 -13.66868 -13.32641 -12.97684 -12.63067 -12.39908 -12.35606 -12.20766 -12.05108 -11.88613 -11.84498 -11.71079 -11.29100 -10.92907 -10.77887 -9.92323 -9.90103 -9.83737 -9.42302 -8.43345 -6.55220 0.06338 0.36200 0.42612 0.68434 0.81042 1.32871 1.35398 1.36523 1.45152 1.79665 1.96682 2.17197 2.24380 2.59577 2.89100 3.02600 3.27942 3.53947 3.72763 3.79015 4.01547 4.07437 4.16692 4.24386 4.27232 4.39194 4.46356 4.53039 4.61091 4.71490 4.78050 4.79420 4.91892 5.02607 5.06390 5.15399 5.18860 5.41806 5.46232 5.47396 5.55036 5.68140 5.83320 5.89373 5.98809 6.20547 6.26306 6.47296 6.70512 6.92581 7.08376 8.73449 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013025 B = 0.003212 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.179728 B = 8715.554764 C = 9904.808031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.100 3.900 3 C -0.281 4.281 4 C 0.257 3.743 5 N -0.499 5.499 6 C 0.710 3.290 7 O -0.549 6.549 8 N -0.685 5.685 9 C 0.164 3.836 10 H 0.186 0.814 11 C -0.117 4.117 12 C -0.090 4.090 13 C -0.123 4.123 14 C -0.110 4.110 15 C -0.133 4.133 16 C -0.116 4.116 17 C 0.510 3.490 18 O -0.467 6.467 19 N -0.324 5.324 20 N -0.336 5.336 21 C 0.240 3.760 22 C -0.553 4.553 23 H 0.023 0.977 24 C 0.023 3.977 25 N -0.936 5.936 26 Si 0.951 3.049 27 H -0.269 1.269 28 H -0.271 1.271 29 H -0.230 1.230 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.172 0.828 34 H 0.462 0.538 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.133 0.867 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.644 18.742 -7.635 24.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.030 4.030 3 C -0.312 4.312 4 C 0.005 3.995 5 N -0.242 5.242 6 C 0.410 3.590 7 O -0.423 6.423 8 N -0.352 5.352 9 C 0.056 3.944 10 H 0.203 0.797 11 C -0.118 4.118 12 C -0.109 4.109 13 C -0.140 4.140 14 C -0.128 4.128 15 C -0.151 4.151 16 C -0.134 4.134 17 C 0.297 3.703 18 O -0.333 6.333 19 N -0.153 5.153 20 N -0.119 5.119 21 C 0.120 3.880 22 C -0.591 4.591 23 H 0.041 0.959 24 C -0.177 4.177 25 N -0.574 5.574 26 Si 0.772 3.228 27 H -0.194 1.194 28 H -0.196 1.196 29 H -0.153 1.153 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.100 0.900 33 H 0.190 0.810 34 H 0.311 0.689 35 H 0.174 0.826 36 H 0.173 0.827 37 H 0.165 0.835 38 H 0.151 0.849 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.889 17.084 -7.530 23.879 hybrid contribution -0.647 0.075 0.454 0.794 sum 14.242 17.159 -7.075 23.395 Atomic orbital electron populations 1.20577 0.84128 1.05264 1.04256 1.21817 0.97075 0.85711 0.98403 1.21138 0.88572 1.00488 1.21002 1.19002 0.87023 0.89376 1.04121 1.43223 1.06326 1.07957 1.66672 1.15640 0.85919 0.79708 0.77769 1.90964 1.32711 1.63770 1.54830 1.45256 1.02371 1.10142 1.77439 1.20956 0.89599 0.81581 1.02292 0.79722 1.19435 0.94630 1.05264 0.92466 1.21348 0.91379 0.96832 1.01313 1.21555 1.01366 0.99049 0.92077 1.21619 0.95289 0.97069 0.98774 1.21380 0.94513 1.00342 0.98882 1.21057 0.99594 0.99744 0.93045 1.21827 0.82533 0.91441 0.74475 1.90846 1.77979 1.20434 1.44039 1.77496 0.99807 1.09732 1.28271 1.48709 1.01565 1.07702 1.53948 1.19889 0.96645 0.74164 0.97302 1.21206 1.48028 0.98940 0.90955 0.95908 1.25830 0.93620 0.99175 0.99081 1.70027 1.46724 1.19266 1.21399 0.85684 0.79003 0.78841 0.79318 1.19419 1.19576 1.15284 0.89982 0.86651 0.90041 0.81029 0.68867 0.82557 0.82729 0.83495 0.84876 0.87711 0.89851 0.93667 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.56 10.11 71.24 0.72 -1.84 16 2 C 0.10 4.06 6.93 41.39 0.29 4.35 16 3 C -0.28 -11.32 9.79 22.10 0.22 -11.10 16 4 C 0.26 11.22 7.68 133.24 1.02 12.24 16 5 N -0.50 -17.61 2.83 -599.32 -1.70 -19.31 16 6 C 0.71 20.47 8.58 179.44 1.54 22.01 16 7 O -0.55 -18.48 15.49 -3.85 -0.06 -18.54 16 8 N -0.69 -11.93 5.50 -463.21 -2.55 -14.47 16 9 C 0.16 2.98 3.89 43.63 0.17 3.15 16 10 H 0.19 1.69 8.04 -2.39 -0.02 1.68 16 11 C -0.12 -2.16 5.07 -19.87 -0.10 -2.26 16 12 C -0.09 -1.29 9.68 22.27 0.22 -1.08 16 13 C -0.12 -1.62 10.05 22.27 0.22 -1.39 16 14 C -0.11 -1.62 10.05 22.27 0.22 -1.40 16 15 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 16 C -0.12 -2.48 9.32 22.27 0.21 -2.27 16 17 C 0.51 16.33 7.56 87.94 0.67 16.99 16 18 O -0.47 -18.81 17.17 -2.91 -0.05 -18.86 16 19 N -0.32 -16.32 11.74 -54.32 -0.64 -16.95 16 20 N -0.34 -16.19 3.59 -338.44 -1.22 -17.40 16 21 C 0.24 11.70 5.06 85.63 0.43 12.14 16 22 C -0.55 -32.48 9.94 25.60 0.25 -32.23 16 23 H 0.02 1.55 8.06 -2.91 -0.02 1.53 16 24 C 0.02 1.31 5.47 84.66 0.46 1.77 16 25 N -0.94 -57.79 13.96 21.45 0.30 -57.49 16 26 Si 0.95 41.44 27.47 68.60 1.88 43.32 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 28 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 29 H -0.23 -8.73 6.54 99.48 0.65 -8.08 16 30 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.08 2.34 7.07 -2.39 -0.02 2.32 16 33 H 0.17 6.30 6.52 -2.91 -0.02 6.28 16 34 H 0.46 4.69 8.96 -92.71 -0.83 3.86 16 35 H 0.16 1.34 8.05 -2.91 -0.02 1.31 16 36 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 37 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 38 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 39 H 0.10 2.51 7.71 -2.91 -0.02 2.48 16 40 H 0.08 3.54 6.09 -2.38 -0.01 3.52 16 41 H 0.05 2.22 7.57 -2.39 -0.02 2.20 16 42 H 0.27 15.57 8.31 -92.70 -0.77 14.79 16 Total: -1.00 -85.75 364.56 2.93 -82.82 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.20 Total: 20.07 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 6.76 Total: 16.82 kcal Atomic # 7 Polarization: -119.83 SS G_CDS: -5.80 Total: -125.63 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -0.11 Total: -37.40 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.88 Total: 43.32 kcal Total: -85.75 2.93 -82.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272161913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.131 kcal (2) G-P(sol) polarization free energy of solvation -85.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds