Wall clock time and date at job start Sat Apr 11 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38259 * 120.00108 * 2 1 4 4 C 1.38212 * 120.00070 * 180.02562 * 3 2 1 5 5 C 1.38250 * 120.00014 * 0.02562 * 4 3 2 6 6 S 1.76199 * 119.99916 * 179.97438 * 5 4 3 7 7 O 1.42099 * 106.40150 * 336.46076 * 6 5 4 8 8 O 1.42104 * 106.40337 * 203.53542 * 6 5 4 9 9 N 1.65608 * 107.21676 * 89.99849 * 6 5 4 10 10 C 1.46495 * 120.00059 * 65.00264 * 9 6 5 11 11 C 1.50697 * 109.47360 * 164.99881 * 10 9 6 12 12 O 1.21281 * 119.99927 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00282 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00000 * 179.97438 * 13 11 10 15 15 H 1.08994 * 109.47185 * 325.00421 * 14 13 11 16 16 C 1.53003 * 109.46991 * 85.00701 * 14 13 11 17 17 C 1.50702 * 109.47119 * 205.00085 * 14 13 11 18 18 H 1.08007 * 119.99981 * 354.48131 * 17 14 13 19 19 C 1.37872 * 120.00181 * 174.48618 * 17 14 13 20 20 N 1.31507 * 120.00188 * 164.58940 * 19 17 14 21 21 Si 1.86797 * 119.99894 * 344.86064 * 19 17 14 22 22 H 1.48501 * 109.47054 * 269.72685 * 21 19 17 23 23 H 1.48506 * 109.47355 * 29.72399 * 21 19 17 24 24 H 1.48500 * 109.47516 * 149.72369 * 21 19 17 25 25 C 1.38211 * 119.99824 * 0.24944 * 5 4 3 26 26 C 1.38214 * 119.99759 * 180.02562 * 2 1 3 27 27 C 1.50698 * 120.00190 * 359.97438 * 26 2 1 28 28 H 1.08997 * 109.46800 * 89.99989 * 1 2 3 29 29 H 1.08999 * 109.46699 * 209.99836 * 1 2 3 30 30 H 1.08996 * 109.46948 * 329.99917 * 1 2 3 31 31 H 1.07999 * 119.99806 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.99603 * 179.97438 * 4 3 2 33 33 H 0.96998 * 119.99698 * 244.99615 * 9 6 5 34 34 H 1.09001 * 109.47193 * 44.99311 * 10 9 6 35 35 H 1.09001 * 109.47120 * 284.99987 * 10 9 6 36 36 H 0.97002 * 120.00007 * 0.02562 * 13 11 10 37 37 H 1.08997 * 109.47143 * 173.55043 * 16 14 13 38 38 H 1.09005 * 109.46269 * 293.54281 * 16 14 13 39 39 H 1.08992 * 109.47288 * 53.53833 * 16 14 13 40 40 H 0.97004 * 120.00365 * 355.18112 * 20 19 17 41 41 H 1.08005 * 119.99734 * 179.72399 * 25 5 4 42 42 H 1.09004 * 109.46514 * 90.00492 * 27 26 2 43 43 H 1.08992 * 109.47049 * 210.00077 * 27 26 2 44 44 H 1.08992 * 109.46905 * 330.00501 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0016 6 16 6.0337 0.0001 -0.0030 7 8 6.4345 1.2500 -0.5471 8 8 6.4346 -1.2495 -0.5482 9 7 6.5251 -0.0006 1.5785 10 6 6.2305 -1.1508 2.4366 11 6 7.0773 -1.0791 3.6811 12 8 7.8512 -0.1582 3.8358 13 7 6.9748 -2.0384 4.6222 14 6 7.7985 -1.9690 5.8317 15 1 8.7724 -1.5468 5.5844 16 6 7.1069 -1.0825 6.8695 17 6 7.9802 -3.3545 6.3960 18 1 7.4557 -4.1899 5.9560 19 6 8.8159 -3.5558 7.4739 20 7 8.7510 -4.6785 8.1557 21 14 10.0351 -2.2306 7.9706 22 1 11.3198 -2.4477 7.2581 23 1 9.4897 -0.8966 7.6124 24 1 10.2652 -2.2938 9.4364 25 6 3.5806 -1.1969 -0.0074 26 6 2.1981 -1.1970 -0.0005 27 6 1.4446 -2.5021 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6584 2.1326 -0.0004 32 1 4.1204 2.1326 -0.0010 33 1 7.0081 0.7606 1.9366 34 1 6.4529 -2.0721 1.8983 35 1 5.1763 -1.1372 2.7132 36 1 6.3562 -2.7752 4.4983 37 1 7.6602 -1.1222 7.8078 38 1 7.0783 -0.0546 6.5078 39 1 6.0898 -1.4389 7.0319 40 1 8.0691 -5.3353 7.9447 41 1 4.1207 -2.1322 -0.0127 42 1 1.2626 -2.8165 -1.0283 43 1 2.0338 -3.2618 0.5129 44 1 0.4924 -2.3718 0.5136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290117229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:12 Heat of formation + Delta-G solvation = -95.664772 kcal Electronic energy + Delta-G solvation = -27152.278056 eV Core-core repulsion = 23196.254143 eV Total energy + Delta-G solvation = -3956.023913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.99604 -39.31567 -37.38923 -36.00595 -35.45079 -34.45000 -33.96481 -32.64579 -32.54051 -30.06850 -28.22431 -27.05157 -26.78942 -24.84228 -22.73710 -21.89574 -21.21112 -19.78545 -19.51062 -18.33818 -17.89265 -17.40795 -16.69686 -16.22557 -15.89658 -15.75821 -15.42915 -14.94958 -14.77558 -14.61925 -14.43550 -13.64333 -13.58554 -13.26686 -13.19677 -13.09447 -12.94269 -12.74977 -12.58708 -12.47104 -12.30912 -12.23900 -12.17176 -12.13137 -12.08421 -11.68456 -11.49004 -11.43548 -10.97476 -10.59488 -10.19575 -9.83520 -9.71643 -9.47286 -9.38900 -9.15110 -9.08480 -8.46782 -8.29102 -6.61652 -4.27470 0.14952 0.48694 0.91045 2.72823 3.01790 3.11575 3.38495 3.42613 3.56215 3.60382 3.78950 4.09432 4.30145 4.39392 4.40230 4.46397 4.71242 4.82126 4.86225 4.98869 5.03144 5.13274 5.16376 5.20467 5.23393 5.25427 5.34477 5.39239 5.55561 5.60409 5.70379 5.72860 5.84375 6.09705 6.31767 6.45343 6.47921 6.59612 6.84196 6.91468 7.18577 7.27459 7.57246 8.18636 8.32589 8.60782 8.82100 9.41538 10.77990 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.002732 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.832565 B =10245.741382 C =11116.565111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.033 4.033 3 C -0.139 4.139 4 C -0.019 4.019 5 C -0.679 4.679 6 S 2.701 3.299 7 O -0.956 6.956 8 O -0.955 6.955 9 N -1.102 6.102 10 C 0.095 3.905 11 C 0.502 3.498 12 O -0.548 6.548 13 N -0.697 5.697 14 C 0.241 3.759 15 H 0.045 0.955 16 C -0.155 4.155 17 C -0.619 4.619 18 H 0.063 0.937 19 C 0.041 3.959 20 N -0.898 5.898 21 Si 1.038 2.962 22 H -0.283 1.283 23 H -0.267 1.267 24 H -0.284 1.284 25 C -0.018 4.018 26 C -0.109 4.109 27 C -0.120 4.120 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.429 0.571 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.396 0.604 37 H 0.058 0.942 38 H 0.030 0.970 39 H 0.043 0.957 40 H 0.270 0.730 41 H 0.142 0.858 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.344 8.606 -17.009 26.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.033 4.033 3 C -0.158 4.158 4 C -0.039 4.039 5 C -0.765 4.765 6 S 2.790 3.210 7 O -0.947 6.947 8 O -0.945 6.945 9 N -0.865 5.865 10 C -0.035 4.035 11 C 0.284 3.716 12 O -0.427 6.427 13 N -0.346 5.346 14 C 0.138 3.862 15 H 0.062 0.938 16 C -0.213 4.213 17 C -0.656 4.656 18 H 0.081 0.919 19 C -0.166 4.166 20 N -0.531 5.531 21 Si 0.865 3.135 22 H -0.210 1.210 23 H -0.192 1.192 24 H -0.210 1.210 25 C -0.037 4.037 26 C -0.109 4.109 27 C -0.176 4.176 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.150 0.850 32 H 0.158 0.842 33 H 0.268 0.732 34 H 0.125 0.875 35 H 0.109 0.891 36 H 0.229 0.771 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.160 0.840 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.111 9.416 -16.584 24.965 hybrid contribution -2.129 -0.466 -0.634 2.270 sum -18.240 8.950 -17.217 26.632 Atomic orbital electron populations 1.21011 0.90679 1.03619 1.02987 1.20127 0.96415 0.92789 0.93980 1.21164 0.94152 0.97912 1.02572 1.20904 0.94700 0.96610 0.91659 1.30953 1.27148 0.99523 1.18903 1.01691 0.73575 0.73691 0.72077 1.93595 1.81450 1.43714 1.75914 1.93594 1.80544 1.44252 1.76131 1.55203 1.72433 1.28321 1.30577 1.21132 1.00017 0.89951 0.92432 1.20227 0.83660 0.83314 0.84353 1.90647 1.38844 1.34427 1.78739 1.46253 1.42734 1.24900 1.20668 1.19117 0.90028 0.97091 0.80011 0.93769 1.22447 1.00714 0.97862 1.00296 1.22087 1.33042 0.92219 1.18282 0.91904 1.25683 0.98188 1.00342 0.92381 1.70825 1.34966 1.08977 1.38294 0.84181 0.76417 0.76102 0.76755 1.20969 1.19227 1.20952 1.20858 0.94054 0.96710 0.92117 1.19905 0.93665 0.95430 1.01945 1.20901 1.00274 0.93636 1.02810 0.90343 0.90463 0.90985 0.85028 0.84155 0.73235 0.87484 0.89116 0.77124 0.92329 0.95123 0.93754 0.91999 0.84031 0.90791 0.90897 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.64 9.60 36.01 0.35 -0.29 16 2 C -0.03 -0.26 5.88 -104.62 -0.62 -0.87 16 3 C -0.14 -1.15 9.70 -39.58 -0.38 -1.53 16 4 C -0.02 -0.19 9.52 -39.59 -0.38 -0.56 16 5 C -0.68 -7.14 5.95 -39.59 -0.24 -7.38 16 6 S 2.70 33.11 5.74 -107.50 -0.62 32.49 16 7 O -0.96 -13.84 17.28 -57.17 -0.99 -14.83 16 8 O -0.96 -13.88 16.75 -57.17 -0.96 -14.84 16 9 N -1.10 -13.75 5.93 -11.66 -0.07 -13.82 16 10 C 0.09 1.19 6.70 -5.20 -0.03 1.15 16 11 C 0.50 8.80 7.86 -10.99 -0.09 8.71 16 12 O -0.55 -11.48 15.39 5.56 0.09 -11.39 16 13 N -0.70 -13.09 5.07 -54.93 -0.28 -13.37 16 14 C 0.24 5.56 2.11 -69.08 -0.15 5.42 16 15 H 0.04 1.11 6.21 -51.93 -0.32 0.79 16 16 C -0.15 -3.35 8.76 37.16 0.33 -3.02 16 17 C -0.62 -16.22 9.02 -34.44 -0.31 -16.53 16 18 H 0.06 1.71 7.96 -52.48 -0.42 1.30 16 19 C 0.04 1.12 5.33 -17.82 -0.09 1.03 16 20 N -0.90 -26.30 13.69 55.43 0.76 -25.54 16 21 Si 1.04 24.54 26.17 -169.99 -4.45 20.09 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -5.94 5.53 56.52 0.31 -5.62 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C -0.02 -0.18 9.18 -39.58 -0.36 -0.54 16 26 C -0.11 -0.92 5.88 -104.62 -0.62 -1.53 16 27 C -0.12 -0.72 9.60 36.00 0.35 -0.37 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.33 5.95 -51.93 -0.31 0.02 16 30 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 31 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.14 1.19 7.62 -52.49 -0.40 0.79 16 33 H 0.43 5.57 7.70 -34.47 -0.27 5.31 16 34 H 0.11 1.18 7.75 -51.93 -0.40 0.78 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.40 6.35 8.53 -40.82 -0.35 6.01 16 37 H 0.06 1.29 5.06 -51.93 -0.26 1.03 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.27 7.80 8.73 -40.82 -0.36 7.44 16 41 H 0.14 1.21 7.61 -52.48 -0.40 0.81 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 44 H 0.07 0.35 5.95 -51.93 -0.31 0.04 16 LS Contribution 374.88 15.07 5.65 5.65 Total: -1.00 -35.30 374.88 -9.16 -44.46 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -6.05 Total: 7.43 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -2.25 Total: -16.33 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.41 Total: -52.73 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -1.86 Total: -41.07 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -4.45 Total: 20.09 kcal Atomic # 16 Polarization: 33.11 SS G_CDS: -0.62 Total: 32.49 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.30 -9.16 -44.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290117229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.203 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds