Wall clock time and date at job start Sat Apr 11 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38239 * 119.99897 * 2 1 4 4 C 1.38232 * 119.99920 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.00044 * 359.97438 * 4 3 2 6 6 S 1.76200 * 120.00028 * 179.97438 * 5 4 3 7 7 O 1.42102 * 106.39946 * 336.45754 * 6 5 4 8 8 O 1.42100 * 106.40248 * 203.54232 * 6 5 4 9 9 N 1.65591 * 107.22272 * 89.99897 * 6 5 4 10 10 C 1.46500 * 119.99844 * 65.00155 * 9 6 5 11 11 C 1.50699 * 109.47230 * 165.00423 * 10 9 6 12 12 O 1.21281 * 119.99822 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00362 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99812 * 359.97438 * 13 11 10 15 15 C 1.46497 * 120.00371 * 179.97438 * 13 11 10 16 16 H 1.09003 * 109.46733 * 0.02562 * 15 13 11 17 17 C 1.53000 * 109.47145 * 119.99612 * 15 13 11 18 18 C 1.50694 * 109.47115 * 239.99685 * 15 13 11 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 13 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.38236 * 119.99976 * 0.25370 * 5 4 3 27 27 C 1.38230 * 119.99818 * 359.47481 * 26 5 4 28 28 H 1.08999 * 109.47285 * 89.99831 * 1 2 3 29 29 H 1.09005 * 109.47248 * 209.99991 * 1 2 3 30 30 H 1.09001 * 109.47151 * 329.99974 * 1 2 3 31 31 H 1.08004 * 120.00011 * 359.97400 * 3 2 1 32 32 H 1.08002 * 119.99854 * 179.97438 * 4 3 2 33 33 H 0.97001 * 120.00712 * 245.00397 * 9 6 5 34 34 H 1.09000 * 109.47307 * 44.99785 * 10 9 6 35 35 H 1.09000 * 109.47042 * 284.99534 * 10 9 6 36 36 H 1.08994 * 109.47665 * 270.01072 * 14 13 11 37 37 H 1.09008 * 109.46786 * 30.00680 * 14 13 11 38 38 H 1.08997 * 109.47360 * 150.00121 * 14 13 11 39 39 H 1.09007 * 109.47356 * 300.00099 * 17 15 13 40 40 H 1.09000 * 109.47156 * 59.99824 * 17 15 13 41 41 H 1.08997 * 109.47359 * 180.02562 * 17 15 13 42 42 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 43 43 H 1.08001 * 120.00148 * 179.72390 * 26 5 4 44 44 H 1.08002 * 119.99850 * 180.26799 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0005 6 16 6.0337 0.0001 -0.0019 7 8 6.4344 1.2496 -0.5473 8 8 6.4345 -1.2498 -0.5461 9 7 6.5252 0.0008 1.5794 10 6 6.2306 -1.1487 2.4385 11 6 7.0775 -1.0758 3.6829 12 8 7.8513 -0.1547 3.8368 13 7 6.9757 -2.0348 4.6244 14 6 6.0414 -3.1478 4.4384 15 6 7.7994 -1.9644 5.8339 16 1 8.4265 -1.0737 5.7949 17 6 6.8932 -1.8959 7.0648 18 6 8.6716 -3.1902 5.9198 19 1 8.6176 -3.9465 5.1507 20 6 9.5380 -3.3469 6.9809 21 7 9.6035 -2.4263 7.9178 22 14 10.6186 -4.8668 7.0877 23 1 11.4537 -4.7953 8.3137 24 1 9.7634 -6.0796 7.1409 25 1 11.4985 -4.9335 5.8934 26 6 3.5805 -1.1971 -0.0053 27 6 2.1982 -1.1971 0.0009 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6581 2.1325 -0.0004 32 1 4.1205 2.1325 -0.0010 33 1 7.0081 0.7623 1.9369 34 1 6.4530 -2.0705 1.9010 35 1 5.1764 -1.1347 2.7153 36 1 5.0727 -2.8839 4.8624 37 1 5.9282 -3.3530 3.3738 38 1 6.4283 -4.0348 4.9401 39 1 6.2623 -1.0092 7.0027 40 1 6.2657 -2.7863 7.1039 41 1 7.5060 -1.8430 7.9646 42 1 10.2127 -2.5367 8.6645 43 1 4.1205 -2.1324 -0.0098 44 1 1.6582 -2.1324 0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290342508.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:20 Heat of formation + Delta-G solvation = -82.484142 kcal Electronic energy + Delta-G solvation = -27437.438428 eV Core-core repulsion = 23481.986071 eV Total energy + Delta-G solvation = -3955.452358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.66525 -39.31112 -37.31966 -35.93773 -35.69011 -34.48418 -33.39025 -32.89629 -31.40162 -29.75923 -27.67650 -26.82521 -26.05027 -25.24237 -23.22332 -22.26077 -21.28476 -19.72868 -18.73040 -18.27159 -17.53653 -16.64940 -16.44413 -15.93457 -15.79962 -15.68829 -15.29027 -15.01589 -14.74577 -14.55871 -14.27351 -13.91977 -13.82909 -13.38318 -12.80298 -12.75486 -12.66571 -12.53338 -12.45289 -12.27008 -12.16407 -12.11406 -12.09492 -11.68327 -11.55027 -11.51659 -11.09061 -11.00071 -10.87907 -10.75773 -10.31952 -10.20397 -9.70784 -9.45522 -9.38934 -9.26819 -9.10183 -8.46527 -7.71541 -6.11168 -4.19530 0.21087 0.52569 0.96259 2.80697 3.16749 3.19094 3.26522 3.31878 3.34329 3.67357 3.81604 4.16153 4.35931 4.36583 4.44378 4.55892 4.81189 4.89359 4.94865 5.10027 5.19026 5.21493 5.22061 5.25628 5.30545 5.53496 5.56452 5.61389 5.69541 5.77258 5.80680 5.93832 6.07192 6.29712 6.49442 6.69376 6.76474 6.96776 7.00370 7.31265 7.46159 7.66279 7.95286 8.13610 8.40932 8.74044 8.91022 9.46966 10.94170 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017126 B = 0.002738 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.504712 B =10225.803062 C =10857.159922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.032 4.032 3 C -0.144 4.144 4 C -0.013 4.013 5 C -0.683 4.683 6 S 2.700 3.300 7 O -0.957 6.957 8 O -0.956 6.956 9 N -1.101 6.101 10 C 0.097 3.903 11 C 0.503 3.497 12 O -0.544 6.544 13 N -0.588 5.588 14 C 0.077 3.923 15 C 0.258 3.742 16 H 0.064 0.936 17 C -0.146 4.146 18 C -0.529 4.529 19 H 0.060 0.940 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.900 3.100 23 H -0.286 1.286 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.017 4.017 27 C -0.143 4.143 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.429 0.571 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.011 0.989 40 H 0.030 0.970 41 H 0.094 0.906 42 H 0.264 0.736 43 H 0.142 0.858 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.364 3.066 -14.302 24.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.033 4.033 3 C -0.163 4.163 4 C -0.032 4.032 5 C -0.769 4.769 6 S 2.789 3.211 7 O -0.948 6.948 8 O -0.946 6.946 9 N -0.865 5.865 10 C -0.033 4.033 11 C 0.287 3.713 12 O -0.423 6.423 13 N -0.319 5.319 14 C -0.067 4.067 15 C 0.158 3.842 16 H 0.082 0.918 17 C -0.205 4.205 18 C -0.568 4.568 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.525 5.525 22 Si 0.727 3.273 23 H -0.212 1.212 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.036 4.036 27 C -0.162 4.162 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.149 0.851 32 H 0.159 0.841 33 H 0.268 0.732 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.030 0.970 40 H 0.049 0.951 41 H 0.112 0.888 42 H 0.074 0.926 43 H 0.160 0.840 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.407 3.422 -14.792 23.860 hybrid contribution -0.051 -0.646 0.628 0.903 sum -18.458 2.776 -14.164 23.431 Atomic orbital electron populations 1.20946 0.90594 1.03541 1.02951 1.20296 0.96506 0.93372 0.93083 1.21189 0.94170 0.98033 1.02885 1.20946 0.94713 0.96693 0.90867 1.31005 1.27334 0.99605 1.19000 1.01689 0.73578 0.73691 0.72114 1.93593 1.81440 1.43757 1.75960 1.93589 1.80513 1.44232 1.76244 1.55214 1.72343 1.28460 1.30531 1.21186 0.99930 0.89594 0.92640 1.20094 0.83693 0.83198 0.84284 1.90648 1.38868 1.34506 1.78253 1.48235 1.40240 1.22238 1.21221 1.21700 0.92664 0.91755 1.00561 1.18987 0.88068 0.99146 0.78009 0.91779 1.22087 0.98776 0.96810 1.02786 1.21272 1.21872 1.05492 1.08126 0.92145 1.24894 0.96744 0.96695 0.95395 1.69867 1.37370 1.33712 1.11574 0.86533 0.80411 0.82783 0.77525 1.21173 1.20205 1.20180 1.20985 0.94782 0.96669 0.91170 1.21192 0.94167 0.98034 1.02770 0.90379 0.90850 0.90924 0.85059 0.84108 0.73225 0.87667 0.89327 0.93504 0.92596 0.89628 0.97018 0.95078 0.88765 0.92567 0.83982 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.01 36.01 0.36 -0.24 16 2 C -0.03 -0.25 5.88 -104.62 -0.62 -0.86 16 3 C -0.14 -1.19 9.70 -39.58 -0.38 -1.57 16 4 C -0.01 -0.13 9.52 -39.59 -0.38 -0.50 16 5 C -0.68 -7.31 5.95 -39.58 -0.24 -7.54 16 6 S 2.70 34.57 5.74 -107.50 -0.62 33.95 16 7 O -0.96 -14.37 17.28 -57.17 -0.99 -15.36 16 8 O -0.96 -14.34 16.75 -57.17 -0.96 -15.30 16 9 N -1.10 -14.87 5.93 -11.66 -0.07 -14.94 16 10 C 0.10 1.33 5.26 -5.19 -0.03 1.30 16 11 C 0.50 9.72 7.74 -10.99 -0.09 9.64 16 12 O -0.54 -12.59 15.06 5.56 0.08 -12.51 16 13 N -0.59 -11.79 2.75 -175.26 -0.48 -12.28 16 14 C 0.08 1.17 9.24 59.85 0.55 1.72 16 15 C 0.26 6.36 2.64 -69.09 -0.18 6.18 16 16 H 0.06 1.84 6.90 -51.93 -0.36 1.49 16 17 C -0.15 -3.37 8.97 37.16 0.33 -3.03 16 18 C -0.53 -13.91 7.99 -34.44 -0.28 -14.18 16 19 H 0.06 1.55 7.33 -52.49 -0.38 1.17 16 20 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 21 N -0.89 -24.67 11.32 55.43 0.63 -24.05 16 22 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C -0.02 -0.16 9.52 -39.59 -0.38 -0.54 16 27 C -0.14 -1.15 9.70 -39.59 -0.38 -1.53 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 30 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 31 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 32 H 0.14 1.23 7.62 -52.49 -0.40 0.83 16 33 H 0.43 6.07 7.70 -34.47 -0.27 5.81 16 34 H 0.11 1.29 7.01 -51.93 -0.36 0.93 16 35 H 0.09 0.93 8.11 -51.93 -0.42 0.51 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.65 6.44 -51.92 -0.33 0.32 16 38 H 0.09 1.41 7.02 -51.93 -0.36 1.04 16 39 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.03 0.65 7.67 -51.93 -0.40 0.26 16 41 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.14 1.16 7.61 -52.49 -0.40 0.76 16 44 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 377.61 15.07 5.69 5.69 Total: -1.00 -34.73 377.61 -9.62 -44.34 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.09 Total: 4.24 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -1.79 Total: -9.52 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.08 Total: -51.26 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -1.86 Total: -43.16 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 34.57 SS G_CDS: -0.62 Total: 33.95 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.73 -9.62 -44.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290342508.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.140 kcal (2) G-P(sol) polarization free energy of solvation -34.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds