Wall clock time and date at job start Sat Apr 11 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38239 * 119.99897 * 2 1 4 4 C 1.38232 * 119.99920 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.00044 * 359.97438 * 4 3 2 6 6 S 1.76200 * 120.00028 * 179.97438 * 5 4 3 7 7 O 1.42102 * 106.39946 * 336.45754 * 6 5 4 8 8 O 1.42100 * 106.40248 * 203.54232 * 6 5 4 9 9 N 1.65591 * 107.22272 * 89.99897 * 6 5 4 10 10 C 1.46500 * 119.99844 * 65.00155 * 9 6 5 11 11 C 1.50699 * 109.47230 * 165.00423 * 10 9 6 12 12 O 1.21281 * 119.99822 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00362 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99812 * 359.97438 * 13 11 10 15 15 C 1.46497 * 120.00371 * 179.97438 * 13 11 10 16 16 H 1.09003 * 109.46733 * 0.02562 * 15 13 11 17 17 C 1.53000 * 109.47145 * 119.99612 * 15 13 11 18 18 C 1.50694 * 109.47115 * 239.99685 * 15 13 11 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 13 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.38236 * 119.99976 * 0.25370 * 5 4 3 27 27 C 1.38230 * 119.99818 * 359.47481 * 26 5 4 28 28 H 1.08999 * 109.47285 * 89.99831 * 1 2 3 29 29 H 1.09005 * 109.47248 * 209.99991 * 1 2 3 30 30 H 1.09001 * 109.47151 * 329.99974 * 1 2 3 31 31 H 1.08004 * 120.00011 * 359.97400 * 3 2 1 32 32 H 1.08002 * 119.99854 * 179.97438 * 4 3 2 33 33 H 0.97001 * 120.00712 * 245.00397 * 9 6 5 34 34 H 1.09000 * 109.47307 * 44.99785 * 10 9 6 35 35 H 1.09000 * 109.47042 * 284.99534 * 10 9 6 36 36 H 1.08994 * 109.47665 * 270.01072 * 14 13 11 37 37 H 1.09008 * 109.46786 * 30.00680 * 14 13 11 38 38 H 1.08997 * 109.47360 * 150.00121 * 14 13 11 39 39 H 1.09007 * 109.47356 * 300.00099 * 17 15 13 40 40 H 1.09000 * 109.47156 * 59.99824 * 17 15 13 41 41 H 1.08997 * 109.47359 * 180.02562 * 17 15 13 42 42 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 43 43 H 1.08001 * 120.00148 * 179.72390 * 26 5 4 44 44 H 1.08002 * 119.99850 * 180.26799 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0005 6 16 6.0337 0.0001 -0.0019 7 8 6.4344 1.2496 -0.5473 8 8 6.4345 -1.2498 -0.5461 9 7 6.5252 0.0008 1.5794 10 6 6.2306 -1.1487 2.4385 11 6 7.0775 -1.0758 3.6829 12 8 7.8513 -0.1547 3.8368 13 7 6.9757 -2.0348 4.6244 14 6 6.0414 -3.1478 4.4384 15 6 7.7994 -1.9644 5.8339 16 1 8.4265 -1.0737 5.7949 17 6 6.8932 -1.8959 7.0648 18 6 8.6716 -3.1902 5.9198 19 1 8.6176 -3.9465 5.1507 20 6 9.5380 -3.3469 6.9809 21 7 9.6035 -2.4263 7.9178 22 14 10.6186 -4.8668 7.0877 23 1 11.4537 -4.7953 8.3137 24 1 9.7634 -6.0796 7.1409 25 1 11.4985 -4.9335 5.8934 26 6 3.5805 -1.1971 -0.0053 27 6 2.1982 -1.1971 0.0009 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6581 2.1325 -0.0004 32 1 4.1205 2.1325 -0.0010 33 1 7.0081 0.7623 1.9369 34 1 6.4530 -2.0705 1.9010 35 1 5.1764 -1.1347 2.7153 36 1 5.0727 -2.8839 4.8624 37 1 5.9282 -3.3530 3.3738 38 1 6.4283 -4.0348 4.9401 39 1 6.2623 -1.0092 7.0027 40 1 6.2657 -2.7863 7.1039 41 1 7.5060 -1.8430 7.9646 42 1 10.2127 -2.5367 8.6645 43 1 4.1205 -2.1324 -0.0098 44 1 1.6582 -2.1324 0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290342508.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:19 Heat of formation + Delta-G solvation = -107.603157 kcal Electronic energy + Delta-G solvation = -27438.527670 eV Core-core repulsion = 23481.986071 eV Total energy + Delta-G solvation = -3956.541600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.84552 -40.27842 -38.41886 -37.32063 -37.03617 -35.72775 -34.76757 -33.96279 -32.02688 -31.56937 -28.19280 -28.08588 -27.43908 -27.24391 -23.85628 -23.00647 -22.89913 -20.71070 -20.19772 -19.22321 -18.71044 -18.39854 -17.75245 -17.27034 -16.94005 -16.63388 -16.53323 -16.27709 -15.87924 -15.43899 -15.26196 -14.84593 -14.72227 -14.50079 -14.26826 -14.10859 -13.68772 -13.55983 -13.32800 -13.26654 -13.24088 -13.19166 -13.09969 -13.09317 -13.00805 -12.82010 -12.72748 -12.61319 -12.17229 -12.11950 -12.08382 -11.81301 -11.18650 -10.85396 -10.61929 -10.47612 -10.07818 -10.02445 -9.34784 -8.13870 -6.29992 -0.73869 -0.20526 0.33280 1.42674 1.45311 1.52043 1.70713 1.84161 2.30903 2.45510 2.51694 2.74237 3.14654 3.25829 3.53132 3.79331 3.88493 3.96365 4.12219 4.28142 4.33049 4.37911 4.49260 4.58091 4.68803 4.71936 4.79208 4.80834 4.82773 4.92934 5.03273 5.08169 5.10827 5.11741 5.12165 5.27047 5.49557 5.51084 5.59914 5.67472 5.84718 5.90142 6.04592 6.17695 6.77806 6.79091 7.27777 7.44756 8.90227 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017126 B = 0.002738 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.504712 B =10225.803062 C =10857.159922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.031 4.031 3 C -0.150 4.150 4 C -0.031 4.031 5 C -0.688 4.688 6 S 2.716 3.284 7 O -0.987 6.987 8 O -0.981 6.981 9 N -1.108 6.108 10 C 0.105 3.895 11 C 0.492 3.508 12 O -0.595 6.595 13 N -0.596 5.596 14 C 0.069 3.931 15 C 0.261 3.739 16 H 0.010 0.990 17 C -0.131 4.131 18 C -0.540 4.540 19 H 0.064 0.936 20 C 0.015 3.985 21 N -0.917 5.917 22 Si 0.963 3.037 23 H -0.286 1.286 24 H -0.260 1.260 25 H -0.279 1.279 26 C -0.028 4.028 27 C -0.145 4.145 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.153 0.847 32 H 0.141 0.859 33 H 0.424 0.576 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.021 0.979 40 H 0.049 0.951 41 H 0.065 0.935 42 H 0.264 0.736 43 H 0.153 0.847 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.495 1.288 -15.394 27.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.032 4.032 3 C -0.168 4.168 4 C -0.050 4.050 5 C -0.779 4.779 6 S 2.809 3.191 7 O -0.977 6.977 8 O -0.971 6.971 9 N -0.870 5.870 10 C -0.024 4.024 11 C 0.279 3.721 12 O -0.477 6.477 13 N -0.326 5.326 14 C -0.073 4.073 15 C 0.159 3.841 16 H 0.028 0.972 17 C -0.190 4.190 18 C -0.578 4.578 19 H 0.082 0.918 20 C -0.184 4.184 21 N -0.556 5.556 22 Si 0.788 3.212 23 H -0.211 1.211 24 H -0.185 1.185 25 H -0.205 1.205 26 C -0.047 4.047 27 C -0.164 4.164 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.171 0.829 32 H 0.159 0.841 33 H 0.262 0.738 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.040 0.960 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.171 0.829 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -21.537 1.610 -15.902 26.820 hybrid contribution 0.804 -0.046 0.925 1.226 sum -20.733 1.564 -14.977 25.625 Atomic orbital electron populations 1.21025 0.88409 1.04598 1.03924 1.20718 0.98151 0.92985 0.91302 1.21501 0.93553 0.99514 1.02274 1.21129 0.95769 0.96533 0.91567 1.30500 1.24978 1.00803 1.21599 1.00914 0.74359 0.72456 0.71354 1.93547 1.82747 1.44927 1.76495 1.93546 1.81834 1.45017 1.76705 1.55235 1.72958 1.28279 1.30573 1.21291 1.00779 0.90450 0.89874 1.21033 0.83523 0.82096 0.85447 1.90622 1.41129 1.36442 1.79475 1.48209 1.40460 1.23926 1.20036 1.22022 0.92416 0.89436 1.03413 1.18555 0.88583 0.96228 0.80771 0.97243 1.21861 0.98264 0.98107 1.00765 1.21583 1.22260 1.05912 1.08057 0.91807 1.25718 0.98071 0.99457 0.95191 1.70016 1.38080 1.35438 1.12100 0.85541 0.78691 0.79873 0.77100 1.21116 1.18496 1.20487 1.21238 0.95730 0.96487 0.91260 1.21548 0.93640 0.99400 1.01777 0.89269 0.89682 0.90071 0.82944 0.84079 0.73810 0.85670 0.85193 0.90701 0.88616 0.90999 0.95972 0.93212 0.91583 0.92689 0.82889 0.82311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.01 71.24 0.71 0.00 16 2 C -0.03 -0.37 5.88 -19.87 -0.12 -0.49 16 3 C -0.15 -2.09 9.70 22.27 0.22 -1.88 16 4 C -0.03 -0.56 9.52 22.27 0.21 -0.35 16 5 C -0.69 -13.69 5.95 22.27 0.13 -13.56 16 6 S 2.72 68.67 5.74 -56.49 -0.32 68.35 16 7 O -0.99 -30.31 17.28 -128.00 -2.21 -32.52 16 8 O -0.98 -28.78 16.75 -128.00 -2.14 -30.92 16 9 N -1.11 -29.57 5.93 -190.79 -1.13 -30.71 16 10 C 0.11 2.70 5.26 85.63 0.45 3.15 16 11 C 0.49 18.97 7.74 87.66 0.68 19.65 16 12 O -0.59 -28.70 15.06 -3.03 -0.05 -28.75 16 13 N -0.60 -23.54 2.75 -826.80 -2.28 -25.82 16 14 C 0.07 1.90 9.24 127.77 1.18 3.08 16 15 C 0.26 13.16 2.64 44.24 0.12 13.28 16 16 H 0.01 0.58 6.90 -2.39 -0.02 0.57 16 17 C -0.13 -6.11 8.97 71.98 0.65 -5.46 16 18 C -0.54 -28.68 7.99 25.60 0.20 -28.48 16 19 H 0.06 3.26 7.33 -2.91 -0.02 3.24 16 20 C 0.02 0.83 5.30 84.66 0.45 1.28 16 21 N -0.92 -52.43 11.32 21.45 0.24 -52.19 16 22 Si 0.96 42.63 29.54 68.60 2.03 44.65 16 23 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 26 C -0.03 -0.45 9.52 22.27 0.21 -0.24 16 27 C -0.15 -1.81 9.70 22.27 0.22 -1.59 16 28 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.08 0.33 8.09 -2.38 -0.02 0.31 16 30 H 0.08 0.36 8.09 -2.39 -0.02 0.34 16 31 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.14 2.44 7.62 -2.91 -0.02 2.42 16 33 H 0.42 12.44 7.70 -96.74 -0.75 11.70 16 34 H 0.13 2.72 7.01 -2.39 -0.02 2.71 16 35 H 0.13 2.27 8.11 -2.39 -0.02 2.25 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.10 1.85 6.44 -2.38 -0.02 1.83 16 38 H 0.07 2.20 7.02 -2.39 -0.02 2.18 16 39 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.05 2.07 7.67 -2.39 -0.02 2.05 16 41 H 0.07 3.46 6.07 -2.39 -0.01 3.44 16 42 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 43 H 0.15 2.06 7.61 -2.91 -0.02 2.03 16 44 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -78.87 377.61 -0.28 -79.15 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.28 Total: 20.38 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 5.31 Total: -11.62 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -3.16 Total: -108.71 kcal Atomic # 8 Polarization: -87.79 SS G_CDS: -4.40 Total: -92.19 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: 68.67 SS G_CDS: -0.32 Total: 68.35 kcal Total: -78.87 -0.28 -79.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290342508.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.457 kcal (2) G-P(sol) polarization free energy of solvation -78.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds