Wall clock time and date at job start Sat Apr 11 2020 05:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38233 * 119.99916 * 2 1 4 4 C 1.38238 * 119.99899 * 179.72498 * 3 2 1 5 5 C 1.38232 * 120.00194 * 0.25433 * 4 3 2 6 6 S 1.76199 * 120.00498 * 179.97438 * 5 4 3 7 7 O 1.42094 * 106.40644 * 203.54268 * 6 5 4 8 8 O 1.42101 * 106.39949 * 336.46533 * 6 5 4 9 9 N 1.65603 * 107.21774 * 89.99943 * 6 5 4 10 10 C 1.46493 * 119.99643 * 66.21999 * 9 6 5 11 11 H 1.08998 * 109.47411 * 3.07046 * 10 9 6 12 12 C 1.50700 * 109.47403 * 243.07292 * 10 9 6 13 13 O 1.21294 * 119.99821 * 345.13752 * 12 10 9 14 14 N 1.34773 * 120.00264 * 165.14033 * 12 10 9 15 15 C 1.37104 * 120.00175 * 184.86102 * 14 12 10 16 16 H 1.08001 * 119.99738 * 359.97438 * 15 14 12 17 17 C 1.38949 * 120.00249 * 180.02562 * 15 14 12 18 18 N 1.31411 * 119.99950 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00007 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47022 * 89.99573 * 19 17 15 21 21 H 1.48503 * 109.47146 * 209.99523 * 19 17 15 22 22 H 1.48501 * 109.46960 * 329.99688 * 19 17 15 23 23 C 1.53005 * 109.47266 * 123.07338 * 10 9 6 24 24 C 1.53002 * 109.46830 * 297.78061 * 23 10 9 25 25 C 1.52999 * 109.46894 * 57.78086 * 23 10 9 26 26 C 1.38239 * 119.99896 * 0.02579 * 5 4 3 27 27 C 1.38237 * 120.00059 * 180.25942 * 2 1 3 28 28 H 1.08994 * 109.47130 * 89.99894 * 1 2 3 29 29 H 1.09004 * 109.47332 * 209.99991 * 1 2 3 30 30 H 1.09003 * 109.47124 * 329.99699 * 1 2 3 31 31 H 1.07994 * 120.00281 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.99961 * 180.27882 * 4 3 2 33 33 H 0.96996 * 119.99959 * 246.22244 * 9 6 5 34 34 H 0.97002 * 120.00220 * 4.86060 * 14 12 10 35 35 H 0.96996 * 119.99650 * 179.97438 * 18 17 15 36 36 H 1.08993 * 109.47207 * 177.78420 * 23 10 9 37 37 H 1.09005 * 109.47017 * 65.64829 * 24 23 10 38 38 H 1.08992 * 109.47103 * 185.64626 * 24 23 10 39 39 H 1.08995 * 109.47159 * 305.65338 * 24 23 10 40 40 H 1.09001 * 109.47213 * 64.70324 * 25 23 10 41 41 H 1.08998 * 109.46606 * 184.69968 * 25 23 10 42 42 H 1.08999 * 109.47141 * 304.69697 * 25 23 10 43 43 H 1.08003 * 119.99856 * 179.97438 * 26 5 4 44 44 H 1.07997 * 120.00286 * 0.03808 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0057 5 6 4.2717 0.0001 0.0062 6 16 6.0337 0.0000 0.0128 7 8 6.4370 -1.2487 -0.5324 8 8 6.4370 1.2507 -0.5277 9 7 6.5179 -0.0029 1.5965 10 6 6.2428 -1.1654 2.4443 11 1 5.7650 -1.9440 1.8497 12 6 5.3269 -0.7605 3.5705 13 8 5.1563 0.4140 3.8209 14 7 4.6974 -1.7032 4.2994 15 6 3.7884 -1.3354 5.2576 16 1 3.5771 -0.2902 5.4286 17 6 3.1397 -2.3074 6.0095 18 7 3.3972 -3.5792 5.8018 19 14 1.9018 -1.8062 7.3154 20 1 0.5484 -1.7254 6.7096 21 1 1.8967 -2.8145 8.4056 22 1 2.2761 -0.4802 7.8694 23 6 7.5559 -1.6980 3.0214 24 6 8.4640 -2.1607 1.8802 25 6 8.2535 -0.5882 3.8104 26 6 3.5805 -1.1971 0.0003 27 6 2.1982 -1.1971 -0.0054 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1324 0.0004 32 1 4.1205 2.1325 0.0103 33 1 6.9836 0.7651 1.9626 34 1 4.8874 -2.6420 4.1461 35 1 2.9447 -4.2576 6.3269 36 1 7.3475 -2.5385 3.6834 37 1 8.7539 -1.3014 1.2754 38 1 9.3558 -2.6314 2.2936 39 1 7.9291 -2.8786 1.2586 40 1 7.6437 -0.3166 4.6721 41 1 9.2268 -0.9413 4.1510 42 1 8.3870 0.2838 3.1703 43 1 4.1206 -2.1325 0.0002 44 1 1.6582 -2.1324 -0.0103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299671471.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:40 Heat of formation + Delta-G solvation = -100.374585 kcal Electronic energy + Delta-G solvation = -28887.011452 eV Core-core repulsion = 24930.783307 eV Total energy + Delta-G solvation = -3956.228145 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.24155 -39.03359 -37.07503 -36.07673 -35.69042 -34.01090 -33.00102 -32.29013 -31.26438 -30.97164 -27.30184 -27.04877 -26.85564 -24.39475 -22.81372 -21.86388 -20.51334 -19.52679 -19.15543 -18.06942 -17.97057 -17.33061 -16.17628 -15.77033 -15.44993 -15.22020 -14.82242 -14.56747 -14.38170 -14.25788 -13.90507 -13.84806 -13.70306 -13.47976 -13.01439 -12.49386 -12.36424 -12.29617 -12.14781 -12.08342 -11.94838 -11.87935 -11.78720 -11.74229 -11.59506 -11.18081 -11.11120 -10.91920 -10.71825 -10.62677 -10.56589 -10.45738 -10.29068 -9.68824 -9.58463 -9.01342 -8.93186 -8.27344 -8.04766 -6.49339 -3.90091 0.56043 0.94404 1.41557 3.07456 3.12407 3.20941 3.26452 3.55363 3.75834 3.96238 4.10725 4.46662 4.77268 4.79441 4.80848 4.95822 5.02402 5.09875 5.22003 5.31647 5.35180 5.37160 5.46606 5.56687 5.61952 5.67554 5.79537 5.91422 5.94182 5.96508 6.02768 6.12123 6.16789 6.23289 6.23891 6.25954 6.38329 6.49767 6.59725 6.65438 6.93308 7.23698 7.47762 7.96499 8.51422 9.09299 9.44409 9.94236 10.67742 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008705 B = 0.005722 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3215.793512 B = 4892.114915 C = 7170.254776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.030 4.030 3 C -0.143 4.143 4 C -0.008 4.008 5 C -0.679 4.679 6 S 2.696 3.304 7 O -0.958 6.958 8 O -0.966 6.966 9 N -1.084 6.084 10 C 0.148 3.852 11 H 0.097 0.903 12 C 0.432 3.568 13 O -0.582 6.582 14 N -0.556 5.556 15 C -0.299 4.299 16 H 0.103 0.897 17 C 0.026 3.974 18 N -0.897 5.897 19 Si 0.927 3.073 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.270 1.270 23 C -0.095 4.095 24 C -0.146 4.146 25 C -0.145 4.145 26 C -0.014 4.014 27 C -0.139 4.139 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.422 0.578 34 H 0.393 0.607 35 H 0.272 0.728 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.138 0.862 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.886 2.421 -10.585 10.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.031 4.031 3 C -0.162 4.162 4 C -0.027 4.027 5 C -0.767 4.767 6 S 2.786 3.214 7 O -0.948 6.948 8 O -0.957 6.957 9 N -0.844 5.844 10 C 0.037 3.963 11 H 0.115 0.885 12 C 0.215 3.785 13 O -0.467 6.467 14 N -0.192 5.192 15 C -0.429 4.429 16 H 0.120 0.880 17 C -0.177 4.177 18 N -0.538 5.538 19 Si 0.754 3.246 20 H -0.204 1.204 21 H -0.208 1.208 22 H -0.194 1.194 23 C -0.116 4.116 24 C -0.203 4.203 25 C -0.202 4.202 26 C -0.033 4.033 27 C -0.157 4.157 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.147 0.853 32 H 0.155 0.845 33 H 0.259 0.741 34 H 0.226 0.774 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.156 0.844 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.121 2.888 -11.125 11.549 hybrid contribution -1.210 -0.085 1.226 1.725 sum -0.089 2.803 -9.899 10.289 Atomic orbital electron populations 1.20923 0.90787 1.03632 1.02522 1.20230 0.96377 0.93374 0.93099 1.21110 0.94164 0.97865 1.03065 1.20825 0.94694 0.96454 0.90761 1.30850 1.27073 0.99645 1.19093 1.01725 0.73727 0.73537 0.72448 1.93578 1.80696 1.44129 1.76390 1.93562 1.81668 1.43715 1.76726 1.55112 1.72565 1.26990 1.29755 1.20680 0.96282 0.86602 0.92780 0.88542 1.20041 0.85204 0.86956 0.86266 1.90514 1.67070 1.17779 1.71297 1.41863 1.36686 1.08181 1.32481 1.19678 1.16217 0.94844 1.12146 0.87967 1.25241 0.98766 0.94793 0.98872 1.69603 1.43179 0.99590 1.41439 0.85902 0.80253 0.78455 0.79961 1.20446 1.20839 1.19425 1.21369 0.93815 0.98915 0.97532 1.21854 0.99221 1.01393 0.97859 1.21787 1.00041 0.97927 1.00473 1.20888 0.94872 0.96386 0.91189 1.21135 0.94181 0.97974 1.02441 0.90653 0.90829 0.91008 0.85308 0.84507 0.74115 0.77374 0.91770 0.89480 0.92830 0.92643 0.91782 0.91676 0.92794 0.92728 0.84416 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 10.01 36.00 0.36 -0.88 16 2 C -0.03 -0.41 5.88 -104.63 -0.62 -1.03 16 3 C -0.14 -1.98 9.70 -39.58 -0.38 -2.36 16 4 C -0.01 -0.12 9.52 -39.58 -0.38 -0.50 16 5 C -0.68 -10.85 5.96 -39.58 -0.24 -11.08 16 6 S 2.70 42.50 5.63 -107.50 -0.61 41.89 16 7 O -0.96 -15.90 16.76 -57.17 -0.96 -16.86 16 8 O -0.97 -16.75 17.28 -57.17 -0.99 -17.73 16 9 N -1.08 -17.12 4.20 -5.88 -0.02 -17.14 16 10 C 0.15 2.51 2.45 -69.08 -0.17 2.34 16 11 H 0.10 1.52 7.58 -51.93 -0.39 1.12 16 12 C 0.43 9.38 5.99 -10.99 -0.07 9.31 16 13 O -0.58 -14.45 16.05 5.55 0.09 -14.36 16 14 N -0.56 -13.16 5.28 -10.96 -0.06 -13.22 16 15 C -0.30 -7.92 9.68 -14.93 -0.14 -8.06 16 16 H 0.10 2.86 7.17 -52.49 -0.38 2.49 16 17 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 18 N -0.90 -23.29 13.05 55.50 0.72 -22.56 16 19 Si 0.93 20.33 29.55 -169.99 -5.02 15.31 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 C -0.10 -1.42 2.76 -90.62 -0.25 -1.67 16 24 C -0.15 -1.90 8.98 37.16 0.33 -1.57 16 25 C -0.14 -2.13 8.74 37.16 0.32 -1.80 16 26 C -0.01 -0.21 9.52 -39.58 -0.38 -0.59 16 27 C -0.14 -1.96 9.70 -39.58 -0.38 -2.35 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 30 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 31 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.14 1.90 7.62 -52.48 -0.40 1.50 16 33 H 0.42 6.31 7.29 -34.47 -0.25 6.06 16 34 H 0.39 8.94 7.90 -40.82 -0.32 8.61 16 35 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.05 0.69 7.84 -51.93 -0.41 0.28 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 1.13 7.45 -51.93 -0.39 0.74 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.75 6.52 -51.93 -0.34 0.41 16 43 H 0.14 1.89 7.62 -52.48 -0.40 1.49 16 44 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 381.83 15.07 5.75 5.75 Total: -1.00 -32.37 381.83 -9.38 -41.75 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -6.21 Total: 16.86 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -2.08 Total: -19.68 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.64 Total: -52.92 kcal Atomic # 8 Polarization: -47.09 SS G_CDS: -1.86 Total: -48.95 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 42.50 SS G_CDS: -0.61 Total: 41.89 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.37 -9.38 -41.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299671471.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.628 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds