Wall clock time and date at job start Sat Apr 11 2020 05:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38233 * 119.99916 * 2 1 4 4 C 1.38238 * 119.99899 * 179.72498 * 3 2 1 5 5 C 1.38232 * 120.00194 * 0.25433 * 4 3 2 6 6 S 1.76199 * 120.00498 * 179.97438 * 5 4 3 7 7 O 1.42094 * 106.40644 * 203.54268 * 6 5 4 8 8 O 1.42101 * 106.39949 * 336.46533 * 6 5 4 9 9 N 1.65603 * 107.21774 * 89.99943 * 6 5 4 10 10 C 1.46493 * 119.99643 * 66.21999 * 9 6 5 11 11 H 1.08998 * 109.47411 * 3.07046 * 10 9 6 12 12 C 1.50700 * 109.47403 * 243.07292 * 10 9 6 13 13 O 1.21294 * 119.99821 * 345.13752 * 12 10 9 14 14 N 1.34773 * 120.00264 * 165.14033 * 12 10 9 15 15 C 1.37104 * 120.00175 * 184.86102 * 14 12 10 16 16 H 1.08001 * 119.99738 * 359.97438 * 15 14 12 17 17 C 1.38949 * 120.00249 * 180.02562 * 15 14 12 18 18 N 1.31411 * 119.99950 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00007 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47022 * 89.99573 * 19 17 15 21 21 H 1.48503 * 109.47146 * 209.99523 * 19 17 15 22 22 H 1.48501 * 109.46960 * 329.99688 * 19 17 15 23 23 C 1.53005 * 109.47266 * 123.07338 * 10 9 6 24 24 C 1.53002 * 109.46830 * 297.78061 * 23 10 9 25 25 C 1.52999 * 109.46894 * 57.78086 * 23 10 9 26 26 C 1.38239 * 119.99896 * 0.02579 * 5 4 3 27 27 C 1.38237 * 120.00059 * 180.25942 * 2 1 3 28 28 H 1.08994 * 109.47130 * 89.99894 * 1 2 3 29 29 H 1.09004 * 109.47332 * 209.99991 * 1 2 3 30 30 H 1.09003 * 109.47124 * 329.99699 * 1 2 3 31 31 H 1.07994 * 120.00281 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.99961 * 180.27882 * 4 3 2 33 33 H 0.96996 * 119.99959 * 246.22244 * 9 6 5 34 34 H 0.97002 * 120.00220 * 4.86060 * 14 12 10 35 35 H 0.96996 * 119.99650 * 179.97438 * 18 17 15 36 36 H 1.08993 * 109.47207 * 177.78420 * 23 10 9 37 37 H 1.09005 * 109.47017 * 65.64829 * 24 23 10 38 38 H 1.08992 * 109.47103 * 185.64626 * 24 23 10 39 39 H 1.08995 * 109.47159 * 305.65338 * 24 23 10 40 40 H 1.09001 * 109.47213 * 64.70324 * 25 23 10 41 41 H 1.08998 * 109.46606 * 184.69968 * 25 23 10 42 42 H 1.08999 * 109.47141 * 304.69697 * 25 23 10 43 43 H 1.08003 * 119.99856 * 179.97438 * 26 5 4 44 44 H 1.07997 * 120.00286 * 0.03808 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0057 5 6 4.2717 0.0001 0.0062 6 16 6.0337 0.0000 0.0128 7 8 6.4370 -1.2487 -0.5324 8 8 6.4370 1.2507 -0.5277 9 7 6.5179 -0.0029 1.5965 10 6 6.2428 -1.1654 2.4443 11 1 5.7650 -1.9440 1.8497 12 6 5.3269 -0.7605 3.5705 13 8 5.1563 0.4140 3.8209 14 7 4.6974 -1.7032 4.2994 15 6 3.7884 -1.3354 5.2576 16 1 3.5771 -0.2902 5.4286 17 6 3.1397 -2.3074 6.0095 18 7 3.3972 -3.5792 5.8018 19 14 1.9018 -1.8062 7.3154 20 1 0.5484 -1.7254 6.7096 21 1 1.8967 -2.8145 8.4056 22 1 2.2761 -0.4802 7.8694 23 6 7.5559 -1.6980 3.0214 24 6 8.4640 -2.1607 1.8802 25 6 8.2535 -0.5882 3.8104 26 6 3.5805 -1.1971 0.0003 27 6 2.1982 -1.1971 -0.0054 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1324 0.0004 32 1 4.1205 2.1325 0.0103 33 1 6.9836 0.7651 1.9626 34 1 4.8874 -2.6420 4.1461 35 1 2.9447 -4.2576 6.3269 36 1 7.3475 -2.5385 3.6834 37 1 8.7539 -1.3014 1.2754 38 1 9.3558 -2.6314 2.2936 39 1 7.9291 -2.8786 1.2586 40 1 7.6437 -0.3166 4.6721 41 1 9.2268 -0.9413 4.1510 42 1 8.3870 0.2838 3.1703 43 1 4.1206 -2.1325 0.0002 44 1 1.6582 -2.1324 -0.0103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299671471.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:39 Heat of formation + Delta-G solvation = -122.670906 kcal Electronic energy + Delta-G solvation = -28887.978294 eV Core-core repulsion = 24930.783307 eV Total energy + Delta-G solvation = -3957.194986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.70220 -40.28454 -38.41894 -37.57162 -37.01864 -35.90769 -34.02543 -33.59815 -33.14933 -32.06944 -28.63822 -28.22351 -28.00672 -26.18805 -23.91781 -22.93645 -21.96279 -20.93290 -20.53211 -19.97887 -19.21536 -18.61437 -17.77158 -17.20773 -16.70965 -16.51538 -16.25215 -16.01591 -15.82790 -15.43659 -15.40090 -15.20310 -14.78282 -14.63640 -14.55720 -13.99312 -13.55924 -13.37589 -13.30581 -13.27583 -13.19958 -13.17794 -13.14731 -13.06619 -12.93477 -12.84199 -12.40374 -12.20537 -12.14973 -12.12862 -11.96582 -11.82604 -11.72377 -11.47326 -11.08790 -10.11056 -10.05746 -10.00867 -9.95151 -8.44454 -5.92188 -0.68818 -0.20343 0.29626 1.36336 1.42007 1.53147 1.81192 2.04086 2.29842 2.40566 2.73175 3.16356 3.21386 3.24177 3.70104 3.80501 3.83820 3.85759 3.89506 4.02718 4.29355 4.30150 4.32310 4.39586 4.61970 4.65035 4.72257 4.75420 4.76425 4.87241 4.97100 5.02064 5.04700 5.05310 5.09121 5.20681 5.24240 5.42077 5.44673 5.44926 5.50177 5.86935 5.94267 6.02650 6.60358 7.14180 7.56609 8.10235 8.72280 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008705 B = 0.005722 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3215.793512 B = 4892.114915 C = 7170.254776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.036 4.036 3 C -0.152 4.152 4 C -0.030 4.030 5 C -0.698 4.698 6 S 2.713 3.287 7 O -0.965 6.965 8 O -0.982 6.982 9 N -1.082 6.082 10 C 0.155 3.845 11 H 0.111 0.889 12 C 0.438 3.562 13 O -0.615 6.615 14 N -0.565 5.565 15 C -0.328 4.328 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.915 5.915 19 Si 0.984 3.016 20 H -0.271 1.271 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.094 4.094 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.033 4.033 27 C -0.152 4.152 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.155 0.845 32 H 0.142 0.858 33 H 0.425 0.575 34 H 0.396 0.604 35 H 0.277 0.723 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.031 0.969 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.147 0.853 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.365 1.913 -10.953 11.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.036 4.036 3 C -0.171 4.171 4 C -0.049 4.049 5 C -0.787 4.787 6 S 2.804 3.196 7 O -0.955 6.955 8 O -0.973 6.973 9 N -0.842 5.842 10 C 0.044 3.956 11 H 0.128 0.872 12 C 0.223 3.777 13 O -0.501 6.501 14 N -0.202 5.202 15 C -0.457 4.457 16 H 0.096 0.904 17 C -0.207 4.207 18 N -0.556 5.556 19 Si 0.808 3.192 20 H -0.197 1.197 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.115 4.115 24 C -0.200 4.200 25 C -0.201 4.201 26 C -0.052 4.052 27 C -0.171 4.171 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.173 0.827 32 H 0.160 0.840 33 H 0.262 0.738 34 H 0.230 0.770 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.050 0.950 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.164 0.836 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.625 2.369 -11.508 11.766 hybrid contribution -1.068 0.116 1.302 1.688 sum -0.443 2.485 -10.206 10.513 Atomic orbital electron populations 1.21001 0.88256 1.04258 1.04137 1.20705 0.98337 0.92948 0.91603 1.21500 0.93820 0.99356 1.02375 1.21103 0.95783 0.96580 0.91442 1.30825 1.26869 1.00359 1.20610 1.01139 0.73545 0.72880 0.72015 1.93557 1.81094 1.44325 1.76559 1.93534 1.82200 1.44502 1.77062 1.55087 1.72575 1.26935 1.29575 1.20635 0.96511 0.87179 0.91315 0.87158 1.20862 0.84410 0.86131 0.86277 1.90488 1.67996 1.19259 1.72328 1.41877 1.36957 1.08607 1.32750 1.19591 1.18070 0.94060 1.14010 0.90394 1.25905 0.99930 0.94716 1.00183 1.69658 1.43756 1.00089 1.42065 0.85058 0.78303 0.77951 0.77849 1.19694 1.19706 1.20008 1.21396 0.92952 0.98824 0.98299 1.21839 0.99547 1.01590 0.96997 1.21779 1.00618 0.98359 0.99317 1.21155 0.95780 0.96569 0.91709 1.21511 0.94031 0.99359 1.02149 0.88385 0.90466 0.90112 0.82748 0.83991 0.73768 0.76989 0.91326 0.89569 0.92634 0.90364 0.91777 0.94964 0.90315 0.91940 0.83560 0.83123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 10.01 71.23 0.71 -1.44 16 2 C -0.04 -0.91 5.88 -19.87 -0.12 -1.03 16 3 C -0.15 -4.06 9.70 22.27 0.22 -3.84 16 4 C -0.03 -0.91 9.52 22.27 0.21 -0.70 16 5 C -0.70 -22.30 5.96 22.27 0.13 -22.17 16 6 S 2.71 84.89 5.63 -56.49 -0.32 84.57 16 7 O -0.97 -31.31 16.76 -128.00 -2.14 -33.46 16 8 O -0.98 -33.94 17.28 -128.00 -2.21 -36.15 16 9 N -1.08 -33.92 4.20 -172.53 -0.72 -34.65 16 10 C 0.16 5.22 2.45 44.25 0.11 5.33 16 11 H 0.11 3.42 7.58 -2.39 -0.02 3.40 16 12 C 0.44 19.35 5.99 87.66 0.52 19.88 16 13 O -0.61 -31.32 16.05 -3.07 -0.05 -31.37 16 14 N -0.57 -27.26 5.28 -306.98 -1.62 -28.88 16 15 C -0.33 -17.69 9.68 84.04 0.81 -16.88 16 16 H 0.08 4.52 7.17 -2.91 -0.02 4.50 16 17 C -0.01 -0.35 5.50 84.93 0.47 0.11 16 18 N -0.91 -47.19 13.05 21.66 0.28 -46.91 16 19 Si 0.98 41.42 29.55 68.60 2.03 43.45 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 21 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 22 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 23 C -0.09 -2.70 2.76 -10.79 -0.03 -2.73 16 24 C -0.14 -3.40 8.98 71.98 0.65 -2.76 16 25 C -0.14 -4.09 8.74 71.98 0.63 -3.46 16 26 C -0.03 -1.00 9.52 22.27 0.21 -0.78 16 27 C -0.15 -4.16 9.70 22.27 0.22 -3.95 16 28 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.34 8.09 -2.39 -0.02 1.32 16 30 H 0.08 1.31 8.09 -2.39 -0.02 1.29 16 31 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 32 H 0.14 4.00 7.62 -2.91 -0.02 3.98 16 33 H 0.43 12.70 7.29 -96.75 -0.71 12.00 16 34 H 0.40 18.27 7.90 -92.71 -0.73 17.54 16 35 H 0.28 13.46 8.31 -92.71 -0.77 12.69 16 36 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.05 1.31 7.84 -2.38 -0.02 1.29 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.03 1.12 7.45 -2.39 -0.02 1.10 16 41 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.06 1.66 6.52 -2.39 -0.02 1.64 16 43 H 0.15 3.98 7.62 -2.91 -0.02 3.96 16 44 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -69.17 381.83 -0.42 -69.59 By element: Atomic # 1 Polarization: 48.61 SS G_CDS: -0.41 Total: 48.20 kcal Atomic # 6 Polarization: -39.15 SS G_CDS: 4.74 Total: -34.41 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -2.06 Total: -110.43 kcal Atomic # 8 Polarization: -96.57 SS G_CDS: -4.41 Total: -100.98 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: 84.89 SS G_CDS: -0.32 Total: 84.57 kcal Total: -69.17 -0.42 -69.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299671471.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.079 kcal (2) G-P(sol) polarization free energy of solvation -69.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds