Wall clock time and date at job start Sat Apr 11 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38006 * 119.92857 * 2 1 4 4 C 1.39474 * 119.85648 * 180.02562 * 3 2 1 5 5 C 1.47995 * 120.13405 * 179.97438 * 4 3 2 6 6 O 1.35244 * 120.00211 * 180.02562 * 5 4 3 7 7 N 1.29992 * 120.00132 * 0.02562 * 5 4 3 8 8 C 1.46505 * 119.99945 * 184.92637 * 7 5 4 9 9 C 1.50703 * 109.46714 * 114.98785 * 8 7 5 10 10 H 1.07997 * 120.00424 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99609 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99953 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 120.00222 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.47488 * 90.00365 * 13 11 9 15 15 H 1.48498 * 109.47386 * 210.00286 * 13 11 9 16 16 H 1.48501 * 109.47511 * 330.00235 * 13 11 9 17 17 C 1.39515 * 119.72950 * 0.02562 * 4 3 2 18 18 C 1.37955 * 119.86259 * 359.97438 * 17 4 3 19 19 S 1.76199 * 119.93590 * 179.97438 * 18 17 4 20 20 O 1.42102 * 106.40228 * 127.93293 * 19 18 17 21 21 O 1.42099 * 106.40580 * 260.85668 * 19 18 17 22 22 N 1.65608 * 107.21406 * 14.39446 * 19 18 17 23 23 C 1.46506 * 119.99469 * 85.39823 * 22 19 18 24 24 C 1.46494 * 120.00285 * 265.39452 * 22 19 18 25 25 C 1.38317 * 119.93382 * 180.02562 * 2 1 3 26 26 C 1.50704 * 119.86020 * 0.25251 * 25 2 1 27 27 H 1.09002 * 109.46753 * 269.97185 * 1 2 3 28 28 H 1.08997 * 109.47562 * 29.96941 * 1 2 3 29 29 H 1.08996 * 109.47669 * 149.97220 * 1 2 3 30 30 H 1.07994 * 120.06966 * 0.05134 * 3 2 1 31 31 H 0.96707 * 113.99977 * 94.16436 * 6 5 4 32 32 H 1.08997 * 109.46826 * 234.98395 * 8 7 5 33 33 H 1.08996 * 109.47265 * 354.98841 * 8 7 5 34 34 H 0.97000 * 120.00842 * 179.97438 * 12 11 9 35 35 H 1.08004 * 120.07271 * 180.02562 * 17 4 3 36 36 H 1.08998 * 109.47421 * 56.32498 * 23 22 19 37 37 H 1.09005 * 109.46443 * 176.31777 * 23 22 19 38 38 H 1.08999 * 109.47339 * 296.31863 * 23 22 19 39 39 H 1.08997 * 109.47213 * 90.00063 * 24 22 19 40 40 H 1.08996 * 109.47404 * 210.00105 * 24 22 19 41 41 H 1.09001 * 109.47443 * 330.00552 * 24 22 19 42 42 H 1.08998 * 109.46839 * 275.43068 * 26 25 2 43 43 H 1.08994 * 109.47070 * 35.43082 * 26 25 2 44 44 H 1.09000 * 109.47361 * 155.43309 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1960 0.0000 4 6 3.5902 1.1943 -0.0005 5 6 4.3348 2.4733 -0.0011 6 8 5.6872 2.4685 -0.0022 7 7 3.6889 3.6014 -0.0006 8 6 4.4219 4.8652 -0.1101 9 6 4.0585 5.5460 -1.4046 10 1 3.3526 5.0835 -2.0784 11 6 4.6281 6.7590 -1.7290 12 7 4.3114 7.3529 -2.8588 13 14 5.8496 7.5587 -0.5639 14 1 7.2234 7.1054 -0.8993 15 1 5.7689 9.0353 -0.6991 16 1 5.5278 7.1713 0.8331 17 6 4.2806 -0.0181 -0.0016 18 6 3.5808 -1.2070 -0.0016 19 16 4.4507 -2.7393 -0.0037 20 8 3.9213 -3.5027 1.0716 21 8 4.4589 -3.1943 -1.3498 22 7 6.0256 -2.4093 0.3880 23 6 6.4275 -2.3205 1.7940 24 6 7.0168 -2.2063 -0.6714 25 6 2.1972 -1.1987 -0.0005 26 6 1.4390 -2.5011 -0.0069 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8902 -0.5133 29 1 -0.3634 -0.8897 -0.5142 30 1 1.6555 2.1313 0.0008 31 1 6.0801 2.5312 -0.8836 32 1 4.1584 5.5117 0.7269 33 1 5.4935 4.6664 -0.0925 34 1 4.7117 8.2064 -3.0870 35 1 5.3606 -0.0259 -0.0016 36 1 6.1664 -3.2467 2.3058 37 1 7.5044 -2.1630 1.8548 38 1 5.9109 -1.4856 2.2676 39 1 7.0528 -1.1500 -0.9378 40 1 7.9972 -2.5254 -0.3177 41 1 6.7380 -2.7925 -1.5471 42 1 1.1682 -2.7688 1.0144 43 1 0.5348 -2.3922 -0.6058 44 1 2.0655 -3.2842 -0.4338 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330577205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:48 Heat of formation + Delta-G solvation = -65.586118 kcal Electronic energy + Delta-G solvation = -27847.052469 eV Core-core repulsion = 23892.332865 eV Total energy + Delta-G solvation = -3954.719604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.95042 -38.17075 -37.36612 -36.52963 -36.08813 -34.09319 -33.64157 -32.74832 -32.06455 -28.92009 -28.38786 -27.43268 -26.65266 -24.94590 -23.23807 -23.02773 -21.01878 -20.00118 -19.07291 -17.83735 -17.69409 -16.97044 -16.44960 -16.34144 -16.06473 -15.68337 -15.14275 -14.89993 -14.70478 -14.53758 -14.37500 -14.23559 -13.46660 -13.40425 -13.00320 -12.94415 -12.84684 -12.68042 -12.53085 -12.47358 -12.35152 -12.27451 -12.15777 -12.11951 -11.87809 -11.77023 -11.52445 -11.29331 -10.93717 -10.76993 -10.73149 -10.36664 -9.84502 -9.55504 -9.43406 -9.08834 -9.02276 -8.68215 -8.17240 -6.23724 -4.25041 0.19309 0.70503 0.96519 2.53758 2.61482 3.16793 3.25334 3.27974 3.43068 3.56485 4.05679 4.26058 4.31731 4.40737 4.50954 4.58942 4.77683 4.94054 5.02500 5.07745 5.08836 5.10526 5.14797 5.27695 5.30911 5.37497 5.49817 5.50648 5.52997 5.55432 5.59780 5.71538 5.73948 5.82575 6.01312 6.16004 6.23983 6.37514 6.45923 6.65185 6.75340 6.89175 7.40489 7.65440 8.22192 8.60977 8.81574 9.34858 10.88620 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014563 B = 0.003237 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.255308 B = 8647.396235 C = 9900.391249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.107 4.107 3 C -0.020 4.020 4 C -0.057 4.057 5 C 0.311 3.689 6 O -0.530 6.530 7 N -0.466 5.466 8 C 0.138 3.862 9 C -0.520 4.520 10 H 0.078 0.922 11 C 0.074 3.926 12 N -0.893 5.893 13 Si 0.879 3.121 14 H -0.274 1.274 15 H -0.282 1.282 16 H -0.266 1.266 17 C -0.012 4.012 18 C -0.674 4.674 19 S 2.700 3.300 20 O -0.954 6.954 21 O -0.955 6.955 22 N -1.008 6.008 23 C 0.087 3.913 24 C 0.079 3.921 25 C 0.017 3.983 26 C -0.141 4.141 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.149 0.851 31 H 0.393 0.607 32 H 0.049 0.951 33 H 0.012 0.988 34 H 0.267 0.733 35 H 0.140 0.860 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.382 -21.848 7.476 23.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.108 4.108 3 C -0.040 4.040 4 C -0.060 4.060 5 C 0.082 3.918 6 O -0.336 6.336 7 N -0.190 5.190 8 C 0.011 3.989 9 C -0.558 4.558 10 H 0.096 0.904 11 C -0.129 4.129 12 N -0.530 5.530 13 Si 0.706 3.294 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.191 1.191 17 C -0.033 4.033 18 C -0.761 4.761 19 S 2.790 3.210 20 O -0.944 6.944 21 O -0.945 6.945 22 N -0.848 5.848 23 C -0.059 4.059 24 C -0.066 4.066 25 C 0.015 3.985 26 C -0.197 4.197 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.167 0.833 31 H 0.251 0.749 32 H 0.066 0.934 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.158 0.842 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.308 -22.038 7.833 23.391 hybrid contribution 1.705 1.671 -0.036 2.387 sum 2.012 -20.368 7.797 21.902 Atomic orbital electron populations 1.20879 0.90169 1.03479 1.02828 1.19796 0.96678 0.91983 1.02328 1.21555 0.93024 0.98587 0.90821 1.18685 0.93220 0.90667 1.03382 1.21663 0.80074 0.91093 0.98925 1.84701 1.18667 1.95565 1.34679 1.72410 1.38938 1.00421 1.07214 1.20352 0.93081 0.86387 0.99129 1.20825 1.27620 1.05221 1.02169 0.90352 1.24870 0.96375 0.96476 0.95155 1.69870 1.43437 1.17041 1.22688 0.86797 0.81772 0.78989 0.81891 1.19971 1.20799 1.19059 1.20832 0.99727 0.90211 0.92545 1.30551 1.05388 1.19953 1.20189 1.01908 0.71622 0.73741 0.73704 1.93589 1.77805 1.67224 1.55806 1.93599 1.85858 1.79152 1.35932 1.57205 1.25808 1.88447 1.13291 1.21639 1.02435 1.02429 0.79349 1.21748 0.92472 1.02259 0.90100 1.19291 0.90980 0.95715 0.92554 1.21234 1.01224 0.92794 1.04434 0.90701 0.90775 0.90935 0.83324 0.74942 0.93353 0.96995 0.92253 0.84232 0.91066 0.89778 0.91949 0.92182 0.90211 0.89674 0.88559 0.89168 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.60 36.00 0.35 -0.78 16 2 C -0.11 -1.38 5.87 -104.68 -0.61 -1.99 16 3 C -0.02 -0.30 9.23 -39.21 -0.36 -0.67 16 4 C -0.06 -0.91 5.87 -104.96 -0.62 -1.52 16 5 C 0.31 5.75 7.74 -14.33 -0.11 5.64 16 6 O -0.53 -8.76 11.21 -17.43 -0.20 -8.96 16 7 N -0.47 -10.23 9.64 -60.39 -0.58 -10.82 16 8 C 0.14 3.39 5.16 -5.19 -0.03 3.36 16 9 C -0.52 -14.72 9.94 -34.44 -0.34 -15.06 16 10 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 11 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 12 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 13 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 14 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 17 C -0.01 -0.17 9.13 -39.21 -0.36 -0.52 16 18 C -0.67 -8.89 5.82 -39.64 -0.23 -9.12 16 19 S 2.70 32.86 4.25 -107.50 -0.46 32.40 16 20 O -0.95 -12.91 15.82 -57.17 -0.90 -13.82 16 21 O -0.96 -13.68 16.33 -57.17 -0.93 -14.61 16 22 N -1.01 -9.33 2.61 -129.21 -0.34 -9.67 16 23 C 0.09 0.64 10.42 59.85 0.62 1.26 16 24 C 0.08 0.59 10.46 59.84 0.63 1.21 16 25 C 0.02 0.22 5.88 -104.54 -0.61 -0.39 16 26 C -0.14 -1.48 8.48 36.01 0.31 -1.18 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.69 8.08 -51.93 -0.42 0.28 16 29 H 0.07 0.57 6.01 -51.93 -0.31 0.26 16 30 H 0.15 2.31 7.56 -52.49 -0.40 1.91 16 31 H 0.39 5.23 9.06 45.56 0.41 5.64 16 32 H 0.05 1.22 7.20 -51.93 -0.37 0.84 16 33 H 0.01 0.29 6.16 -51.93 -0.32 -0.03 16 34 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.14 1.58 6.16 -52.48 -0.32 1.26 16 36 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 37 H 0.08 0.43 7.77 -51.93 -0.40 0.02 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.40 7.58 -51.93 -0.39 0.01 16 40 H 0.08 0.40 7.89 -51.93 -0.41 -0.01 16 41 H 0.08 0.67 7.00 -51.93 -0.36 0.31 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.09 0.74 6.17 -51.93 -0.32 0.42 16 44 H 0.06 0.64 6.02 -51.93 -0.31 0.32 16 LS Contribution 372.44 15.07 5.61 5.61 Total: -1.00 -35.76 372.44 -8.37 -44.13 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.20 Total: 3.17 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -1.47 Total: -17.75 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.15 Total: -46.45 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -2.03 Total: -37.39 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Atomic # 16 Polarization: 32.86 SS G_CDS: -0.46 Total: 32.40 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.76 -8.37 -44.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330577205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.454 kcal (2) G-P(sol) polarization free energy of solvation -35.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds