Wall clock time and date at job start Sat Apr 11 2020 05:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38006 * 119.92857 * 2 1 4 4 C 1.39474 * 119.85648 * 180.02562 * 3 2 1 5 5 C 1.47995 * 120.13405 * 179.97438 * 4 3 2 6 6 O 1.35244 * 120.00211 * 180.02562 * 5 4 3 7 7 N 1.29992 * 120.00132 * 0.02562 * 5 4 3 8 8 C 1.46505 * 119.99945 * 184.92637 * 7 5 4 9 9 C 1.50703 * 109.46714 * 114.98785 * 8 7 5 10 10 H 1.07997 * 120.00424 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99609 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99953 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 120.00222 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.47488 * 90.00365 * 13 11 9 15 15 H 1.48498 * 109.47386 * 210.00286 * 13 11 9 16 16 H 1.48501 * 109.47511 * 330.00235 * 13 11 9 17 17 C 1.39515 * 119.72950 * 0.02562 * 4 3 2 18 18 C 1.37955 * 119.86259 * 359.97438 * 17 4 3 19 19 S 1.76199 * 119.93590 * 179.97438 * 18 17 4 20 20 O 1.42102 * 106.40228 * 127.93293 * 19 18 17 21 21 O 1.42099 * 106.40580 * 260.85668 * 19 18 17 22 22 N 1.65608 * 107.21406 * 14.39446 * 19 18 17 23 23 C 1.46506 * 119.99469 * 85.39823 * 22 19 18 24 24 C 1.46494 * 120.00285 * 265.39452 * 22 19 18 25 25 C 1.38317 * 119.93382 * 180.02562 * 2 1 3 26 26 C 1.50704 * 119.86020 * 0.25251 * 25 2 1 27 27 H 1.09002 * 109.46753 * 269.97185 * 1 2 3 28 28 H 1.08997 * 109.47562 * 29.96941 * 1 2 3 29 29 H 1.08996 * 109.47669 * 149.97220 * 1 2 3 30 30 H 1.07994 * 120.06966 * 0.05134 * 3 2 1 31 31 H 0.96707 * 113.99977 * 94.16436 * 6 5 4 32 32 H 1.08997 * 109.46826 * 234.98395 * 8 7 5 33 33 H 1.08996 * 109.47265 * 354.98841 * 8 7 5 34 34 H 0.97000 * 120.00842 * 179.97438 * 12 11 9 35 35 H 1.08004 * 120.07271 * 180.02562 * 17 4 3 36 36 H 1.08998 * 109.47421 * 56.32498 * 23 22 19 37 37 H 1.09005 * 109.46443 * 176.31777 * 23 22 19 38 38 H 1.08999 * 109.47339 * 296.31863 * 23 22 19 39 39 H 1.08997 * 109.47213 * 90.00063 * 24 22 19 40 40 H 1.08996 * 109.47404 * 210.00105 * 24 22 19 41 41 H 1.09001 * 109.47443 * 330.00552 * 24 22 19 42 42 H 1.08998 * 109.46839 * 275.43068 * 26 25 2 43 43 H 1.08994 * 109.47070 * 35.43082 * 26 25 2 44 44 H 1.09000 * 109.47361 * 155.43309 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1960 0.0000 4 6 3.5902 1.1943 -0.0005 5 6 4.3348 2.4733 -0.0011 6 8 5.6872 2.4685 -0.0022 7 7 3.6889 3.6014 -0.0006 8 6 4.4219 4.8652 -0.1101 9 6 4.0585 5.5460 -1.4046 10 1 3.3526 5.0835 -2.0784 11 6 4.6281 6.7590 -1.7290 12 7 4.3114 7.3529 -2.8588 13 14 5.8496 7.5587 -0.5639 14 1 7.2234 7.1054 -0.8993 15 1 5.7689 9.0353 -0.6991 16 1 5.5278 7.1713 0.8331 17 6 4.2806 -0.0181 -0.0016 18 6 3.5808 -1.2070 -0.0016 19 16 4.4507 -2.7393 -0.0037 20 8 3.9213 -3.5027 1.0716 21 8 4.4589 -3.1943 -1.3498 22 7 6.0256 -2.4093 0.3880 23 6 6.4275 -2.3205 1.7940 24 6 7.0168 -2.2063 -0.6714 25 6 2.1972 -1.1987 -0.0005 26 6 1.4390 -2.5011 -0.0069 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8902 -0.5133 29 1 -0.3634 -0.8897 -0.5142 30 1 1.6555 2.1313 0.0008 31 1 6.0801 2.5312 -0.8836 32 1 4.1584 5.5117 0.7269 33 1 5.4935 4.6664 -0.0925 34 1 4.7117 8.2064 -3.0870 35 1 5.3606 -0.0259 -0.0016 36 1 6.1664 -3.2467 2.3058 37 1 7.5044 -2.1630 1.8548 38 1 5.9109 -1.4856 2.2676 39 1 7.0528 -1.1500 -0.9378 40 1 7.9972 -2.5254 -0.3177 41 1 6.7380 -2.7925 -1.5471 42 1 1.1682 -2.7688 1.0144 43 1 0.5348 -2.3922 -0.6058 44 1 2.0655 -3.2842 -0.4338 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330577205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:47 Heat of formation + Delta-G solvation = -95.163710 kcal Electronic energy + Delta-G solvation = -27848.335050 eV Core-core repulsion = 23892.332865 eV Total energy + Delta-G solvation = -3956.002185 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.08560 -39.53632 -38.37962 -37.21502 -37.10820 -35.83326 -34.83609 -34.23239 -33.46999 -30.46512 -28.95654 -28.67088 -27.76402 -25.60910 -24.87258 -24.11952 -22.46037 -21.28804 -19.99699 -19.17583 -18.88596 -18.62815 -17.77555 -17.27060 -17.13589 -16.86668 -16.38214 -16.19566 -16.06300 -15.58054 -15.40138 -15.25671 -14.69409 -14.39338 -14.26629 -14.20161 -13.79476 -13.74758 -13.62723 -13.40687 -13.27852 -13.25726 -13.21415 -13.16476 -13.01094 -12.68268 -12.58514 -12.56533 -12.53799 -12.35451 -11.98751 -11.83904 -11.64384 -11.11228 -10.97200 -10.57494 -10.17037 -10.11560 -9.49544 -8.41190 -6.49380 -0.73486 -0.44526 -0.12931 1.21109 1.30337 1.33100 1.44539 1.76338 2.25774 2.38161 2.49521 2.71516 2.93072 3.32957 3.46137 3.58712 3.60727 3.82124 3.90449 4.07921 4.10894 4.34097 4.50434 4.54830 4.56005 4.56629 4.62089 4.69475 4.76143 4.79034 4.83384 4.87322 4.94368 4.98717 5.01788 5.02905 5.06533 5.20737 5.22827 5.35684 5.39562 5.51666 5.70453 6.01775 6.34585 6.54477 7.02250 7.19473 8.75101 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014563 B = 0.003237 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.255308 B = 8647.396235 C = 9900.391249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 C -0.033 4.033 4 C -0.088 4.088 5 C 0.341 3.659 6 O -0.530 6.530 7 N -0.518 5.518 8 C 0.151 3.849 9 C -0.532 4.532 10 H 0.029 0.971 11 C 0.018 3.982 12 N -0.940 5.940 13 Si 0.954 3.046 14 H -0.257 1.257 15 H -0.276 1.276 16 H -0.255 1.255 17 C -0.002 4.002 18 C -0.685 4.685 19 S 2.714 3.286 20 O -0.969 6.969 21 O -0.979 6.979 22 N -1.003 6.003 23 C 0.076 3.924 24 C 0.068 3.932 25 C 0.015 3.985 26 C -0.147 4.147 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.135 0.865 31 H 0.411 0.589 32 H 0.039 0.961 33 H 0.022 0.978 34 H 0.272 0.728 35 H 0.161 0.839 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.076 0.924 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.861 -23.494 9.029 25.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.109 4.109 3 C -0.053 4.053 4 C -0.090 4.090 5 C 0.113 3.887 6 O -0.338 6.338 7 N -0.242 5.242 8 C 0.023 3.977 9 C -0.570 4.570 10 H 0.048 0.952 11 C -0.181 4.181 12 N -0.579 5.579 13 Si 0.776 3.224 14 H -0.181 1.181 15 H -0.202 1.202 16 H -0.179 1.179 17 C -0.023 4.023 18 C -0.770 4.770 19 S 2.803 3.197 20 O -0.959 6.959 21 O -0.969 6.969 22 N -0.845 5.845 23 C -0.068 4.068 24 C -0.076 4.076 25 C 0.012 3.988 26 C -0.203 4.203 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.153 0.847 31 H 0.271 0.729 32 H 0.057 0.943 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.179 0.821 36 H 0.090 0.910 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.127 0.873 41 H 0.095 0.905 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.781 -23.702 9.376 25.551 hybrid contribution 1.221 1.946 -0.560 2.365 sum 3.002 -21.756 8.816 23.666 Atomic orbital electron populations 1.20993 0.87815 1.04505 1.04152 1.20094 0.98407 0.91078 1.01299 1.21607 0.93049 0.99100 0.91522 1.18696 0.93610 0.90236 1.06496 1.22071 0.80812 0.91198 0.94590 1.84625 1.17607 1.95543 1.36040 1.72425 1.39021 1.00320 1.12471 1.19991 0.93598 0.87621 0.96476 1.21005 1.26736 1.05842 1.03417 0.95219 1.25845 0.98455 0.96899 0.96912 1.70020 1.45148 1.17808 1.24920 0.85617 0.79293 0.77853 0.79625 1.18146 1.20159 1.17890 1.20999 1.00742 0.89337 0.91172 1.30882 1.05988 1.20305 1.19858 1.01403 0.72198 0.73229 0.72847 1.93562 1.78723 1.67569 1.56031 1.93566 1.86524 1.79567 1.37279 1.57072 1.24665 1.88177 1.14587 1.21888 1.04282 1.02572 0.78055 1.22004 0.93200 1.02880 0.89528 1.19744 0.91307 0.96790 0.90916 1.21411 1.01891 0.91150 1.05892 0.89125 0.90955 0.88732 0.84698 0.72905 0.94306 0.95995 0.91841 0.82143 0.90970 0.86953 0.91988 0.91316 0.87335 0.90501 0.87017 0.86603 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 9.60 71.23 0.68 -1.39 16 2 C -0.11 -2.68 5.87 -19.90 -0.12 -2.80 16 3 C -0.03 -1.01 9.23 22.51 0.21 -0.80 16 4 C -0.09 -2.78 5.87 -20.08 -0.12 -2.90 16 5 C 0.34 12.61 7.74 87.55 0.68 13.29 16 6 O -0.53 -16.75 11.21 -85.27 -0.96 -17.70 16 7 N -0.52 -23.35 9.64 -459.21 -4.43 -27.77 16 8 C 0.15 7.52 5.16 85.63 0.44 7.96 16 9 C -0.53 -31.27 9.94 25.60 0.25 -31.01 16 10 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 11 C 0.02 1.03 5.47 84.66 0.46 1.50 16 12 N -0.94 -57.91 13.96 21.45 0.30 -57.61 16 13 Si 0.95 43.13 27.47 68.60 1.88 45.01 16 14 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 15 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 16 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 17 C 0.00 -0.05 9.13 22.51 0.21 0.16 16 18 C -0.68 -17.14 5.82 22.23 0.13 -17.01 16 19 S 2.71 61.92 4.25 -56.49 -0.24 61.68 16 20 O -0.97 -24.72 15.82 -128.00 -2.02 -26.74 16 21 O -0.98 -27.01 16.33 -128.00 -2.09 -29.10 16 22 N -1.00 -16.25 2.61 -562.69 -1.47 -17.72 16 23 C 0.08 0.92 10.42 127.77 1.33 2.25 16 24 C 0.07 0.83 10.46 127.77 1.34 2.17 16 25 C 0.01 0.36 5.88 -19.81 -0.12 0.24 16 26 C -0.15 -2.77 8.48 71.24 0.60 -2.17 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 29 H 0.09 1.22 6.01 -2.39 -0.01 1.21 16 30 H 0.14 4.43 7.56 -2.91 -0.02 4.41 16 31 H 0.41 10.26 9.06 -74.05 -0.67 9.59 16 32 H 0.04 1.97 7.20 -2.39 -0.02 1.95 16 33 H 0.02 1.03 6.16 -2.39 -0.01 1.02 16 34 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 35 H 0.16 3.30 6.16 -2.91 -0.02 3.28 16 36 H 0.07 0.87 7.87 -2.39 -0.02 0.85 16 37 H 0.11 0.72 7.77 -2.38 -0.02 0.71 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.73 7.58 -2.39 -0.02 0.71 16 40 H 0.11 0.71 7.89 -2.39 -0.02 0.69 16 41 H 0.08 1.09 7.00 -2.39 -0.02 1.07 16 42 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.12 1.54 6.17 -2.39 -0.01 1.53 16 44 H 0.05 1.06 6.02 -2.39 -0.01 1.05 16 Total: -1.00 -79.88 372.44 -2.73 -82.61 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.32 Total: 17.86 kcal Atomic # 6 Polarization: -36.49 SS G_CDS: 5.98 Total: -30.51 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -5.60 Total: -103.11 kcal Atomic # 8 Polarization: -68.47 SS G_CDS: -5.07 Total: -73.54 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.88 Total: 45.01 kcal Atomic # 16 Polarization: 61.92 SS G_CDS: -0.24 Total: 61.68 kcal Total: -79.88 -2.73 -82.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330577205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.555 kcal (2) G-P(sol) polarization free energy of solvation -79.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds