Wall clock time and date at job start Sat Apr 11 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30472 * 126.18347 * 2 1 4 4 N 1.28671 * 109.51025 * 179.97438 * 3 2 1 5 5 C 1.31268 * 109.23510 * 0.02562 * 4 3 2 6 6 C 1.47745 * 126.37916 * 180.26817 * 5 4 3 7 7 C 1.39703 * 120.00218 * 179.41083 * 6 5 4 8 8 C 1.37620 * 120.00500 * 179.71738 * 7 6 5 9 9 C 1.39728 * 119.99632 * 0.55518 * 8 7 6 10 10 C 1.47733 * 120.00092 * 179.74087 * 9 8 7 11 11 O 1.21574 * 120.00025 * 314.28092 * 10 9 8 12 12 N 1.34771 * 119.99676 * 134.28502 * 10 9 8 13 13 C 1.46507 * 119.99677 * 185.90691 * 12 10 9 14 14 C 1.50694 * 109.47553 * 89.99580 * 13 12 10 15 15 H 1.08007 * 119.99929 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00218 * 179.97438 * 14 13 12 17 17 N 1.31506 * 119.99979 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99943 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47340 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46967 * 120.00090 * 18 16 14 21 21 H 1.48502 * 109.47109 * 240.00103 * 18 16 14 22 22 C 1.46498 * 120.00282 * 5.89884 * 12 10 9 23 23 C 1.53000 * 109.47185 * 98.13798 * 22 12 10 24 24 C 1.47192 * 109.47600 * 185.46485 * 23 22 12 25 25 N 8.65825 * 163.13904 * 294.18057 * 2 1 3 26 26 C 1.39724 * 119.99424 * 359.71726 * 9 8 7 27 27 C 1.37618 * 119.99992 * 0.02562 * 26 9 8 28 28 O 1.34339 * 126.18257 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47195 * 270.02184 * 1 2 3 30 30 H 1.08998 * 109.47186 * 30.02400 * 1 2 3 31 31 H 1.09001 * 109.46877 * 150.02783 * 1 2 3 32 32 H 1.08002 * 119.99451 * 0.02562 * 7 6 5 33 33 H 1.08003 * 120.00045 * 180.26578 * 8 7 6 34 34 H 1.09003 * 109.46530 * 209.99679 * 13 12 10 35 35 H 1.08999 * 109.47121 * 329.99233 * 13 12 10 36 36 H 0.97004 * 120.00540 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.46955 * 218.13316 * 22 12 10 38 38 H 1.09003 * 109.47255 * 338.13560 * 22 12 10 39 39 H 1.09011 * 109.46819 * 305.46441 * 23 22 12 40 40 H 1.09004 * 109.47202 * 65.45737 * 23 22 12 41 41 H 1.08004 * 119.99997 * 179.97438 * 26 9 8 42 42 H 1.07996 * 120.00485 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2772 1.0531 0.0000 4 7 3.5098 0.6839 0.0005 5 6 3.5685 -0.6275 0.0004 6 6 4.7960 -1.4497 0.0064 7 6 4.7030 -2.8436 0.0178 8 6 5.8463 -3.6096 0.0176 9 6 7.1002 -2.9932 0.0176 10 6 8.3276 -3.8154 0.0231 11 8 8.4221 -4.7615 0.7807 12 7 9.3426 -3.5165 -0.8117 13 6 10.5044 -4.4047 -0.8996 14 6 10.2649 -5.4410 -1.9672 15 1 9.3396 -5.4386 -2.5242 16 6 11.2270 -6.3922 -2.2328 17 7 12.3534 -6.3954 -1.5543 18 14 10.9297 -7.6772 -3.5557 19 1 9.5945 -7.4580 -4.1676 20 1 11.9778 -7.5625 -4.6015 21 1 10.9808 -9.0321 -2.9501 22 6 9.2841 -2.3036 -1.6313 23 6 10.0870 -1.1912 -0.9540 24 6 9.9213 0.0622 -1.7077 25 7 9.7930 1.0287 -2.2910 26 6 7.1932 -1.5990 0.0119 27 6 6.0498 -0.8332 0.0068 28 8 2.3000 -1.0843 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8903 -0.5134 32 1 3.7338 -3.3201 0.0218 33 1 5.7743 -4.6873 0.0221 34 1 11.3896 -3.8209 -1.1520 35 1 10.6568 -4.8996 0.0595 36 1 13.0305 -7.0644 -1.7414 37 1 9.7063 -2.5091 -2.6149 38 1 8.2463 -1.9882 -1.7399 39 1 9.7270 -1.0524 0.0656 40 1 11.1417 -1.4657 -0.9326 41 1 8.1623 -1.1224 0.0123 42 1 6.1215 0.2444 0.0020 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344208830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:10 Heat of formation + Delta-G solvation = 70.228085 kcal Electronic energy + Delta-G solvation = -28021.744779 eV Core-core repulsion = 23969.763320 eV Total energy + Delta-G solvation = -4051.981459 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.44020 -40.35006 -38.32361 -36.98979 -36.48260 -35.42364 -33.80548 -32.98730 -31.58337 -31.44192 -30.88273 -28.50534 -27.35632 -25.09908 -24.12716 -23.49812 -23.18917 -22.22817 -21.86227 -19.25390 -18.18622 -17.76556 -17.73644 -16.90995 -16.66072 -16.48575 -16.03677 -15.36893 -15.15603 -14.78485 -14.67398 -14.31354 -14.06783 -13.85511 -13.76900 -13.56223 -13.37375 -13.14896 -12.97599 -12.77431 -12.68567 -12.51404 -12.30702 -12.17479 -12.03687 -11.80324 -11.45563 -11.34690 -11.20896 -10.99174 -10.95833 -10.73310 -10.36156 -10.26942 -9.78186 -9.33794 -9.24183 -8.72638 -8.54167 -7.98315 -6.16009 -4.21195 0.05436 1.10235 1.25231 1.83186 2.13070 2.68472 2.77724 3.06358 3.23777 3.32113 3.33925 3.40006 3.44973 3.66058 3.96935 4.09587 4.35177 4.39258 4.58612 4.69000 4.73754 4.78419 4.89716 4.94245 4.97942 5.04662 5.06695 5.10176 5.19424 5.25330 5.33664 5.39884 5.49921 5.74407 5.77154 5.95575 6.02181 6.05217 6.17377 6.49280 6.82613 7.23442 7.31740 7.53681 7.79625 7.95729 8.06781 8.08791 8.64926 8.85271 9.44801 10.92124 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013574 B = 0.002716 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.294255 B =10307.380849 C =11523.355901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.159 3.841 3 N -0.286 5.286 4 N -0.275 5.275 5 C 0.215 3.785 6 C -0.023 4.023 7 C -0.085 4.085 8 C -0.072 4.072 9 C -0.084 4.084 10 C 0.547 3.453 11 O -0.521 6.521 12 N -0.586 5.586 13 C 0.242 3.758 14 C -0.532 4.532 15 H 0.060 0.940 16 C 0.064 3.936 17 N -0.891 5.891 18 Si 0.897 3.103 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.104 3.896 23 C -0.056 4.056 24 C 0.212 3.788 25 N -0.436 5.436 26 C -0.109 4.109 27 C -0.070 4.070 28 O -0.220 6.220 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.039 0.961 35 H 0.051 0.949 36 H 0.264 0.736 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.124 0.876 41 H 0.147 0.853 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.271 10.534 3.635 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.051 4.051 3 N -0.134 5.134 4 N -0.122 5.122 5 C 0.008 3.992 6 C -0.025 4.025 7 C -0.104 4.104 8 C -0.090 4.090 9 C -0.088 4.088 10 C 0.333 3.667 11 O -0.398 6.398 12 N -0.316 5.316 13 C 0.124 3.876 14 C -0.571 4.571 15 H 0.078 0.922 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.725 3.275 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.022 4.022 23 C -0.097 4.097 24 C -0.106 4.106 25 N -0.113 5.113 26 C -0.127 4.127 27 C -0.089 4.089 28 O -0.100 6.100 29 H 0.118 0.882 30 H 0.126 0.874 31 H 0.112 0.888 32 H 0.154 0.846 33 H 0.162 0.838 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.129 0.871 40 H 0.141 0.859 41 H 0.164 0.836 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.861 12.610 3.179 22.094 hybrid contribution -0.398 -2.291 -0.570 2.394 sum -18.258 10.319 2.609 21.134 Atomic orbital electron populations 1.20374 0.80005 1.05824 1.05336 1.28064 0.97831 0.79472 0.99726 1.74449 0.96065 1.25499 1.17343 1.74757 1.11945 1.08240 1.17292 1.25511 0.83441 0.90455 0.99804 1.17324 0.86656 0.91487 1.06991 1.21154 0.99540 0.91521 0.98233 1.21152 0.90079 1.01092 0.96709 1.20550 0.95093 0.93991 0.99142 1.18127 0.82782 0.84322 0.81422 1.90812 1.80554 1.29120 1.39279 1.48153 1.21145 1.23045 1.39281 1.19448 0.80952 0.88199 0.98988 1.21431 1.02967 1.13313 1.19358 0.92215 1.24910 0.94967 0.97503 0.96517 1.69919 1.06996 1.35526 1.40555 0.86457 0.78226 0.81464 0.81373 1.19760 1.20927 1.20845 1.21598 1.00674 0.83945 0.95951 1.20009 1.05749 0.85815 0.98173 1.29005 0.93249 0.94440 0.93894 1.81234 1.08828 1.11927 1.09329 1.21727 0.99490 0.92579 0.98924 1.21070 0.89768 1.00991 0.97059 1.84815 1.17166 1.38028 1.69944 0.88198 0.87439 0.88761 0.84605 0.83844 0.94309 0.93136 0.92618 0.88545 0.89662 0.87114 0.85853 0.83596 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.23 10.51 36.00 0.38 0.15 16 2 C 0.16 1.53 8.47 -12.86 -0.11 1.42 16 3 N -0.29 -3.64 12.22 32.58 0.40 -3.24 16 4 N -0.28 -3.80 11.91 32.06 0.38 -3.42 16 5 C 0.22 2.65 7.98 -13.91 -0.11 2.54 16 6 C -0.02 -0.26 5.88 -104.91 -0.62 -0.88 16 7 C -0.08 -0.92 9.70 -39.26 -0.38 -1.30 16 8 C -0.07 -0.90 9.67 -39.25 -0.38 -1.28 16 9 C -0.08 -1.16 5.09 -104.91 -0.53 -1.70 16 10 C 0.55 9.87 7.26 -12.38 -0.09 9.78 16 11 O -0.52 -11.66 16.54 5.30 0.09 -11.57 16 12 N -0.59 -10.31 2.46 -176.21 -0.43 -10.75 16 13 C 0.24 5.47 5.22 -5.19 -0.03 5.45 16 14 C -0.53 -13.64 9.39 -34.44 -0.32 -13.96 16 15 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -24.65 13.28 55.43 0.74 -23.91 16 18 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.10 1.36 4.83 -4.04 -0.02 1.34 16 23 C -0.06 -0.58 5.10 -29.52 -0.15 -0.73 16 24 C 0.21 2.49 15.38 -20.76 -0.32 2.17 16 25 N -0.44 -6.27 18.54 42.16 0.78 -5.49 16 26 C -0.11 -1.24 7.38 -39.25 -0.29 -1.53 16 27 C -0.07 -0.77 9.68 -39.26 -0.38 -1.15 16 28 O -0.22 -2.40 10.65 4.17 0.04 -2.36 16 29 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.14 1.19 7.92 -52.49 -0.42 0.77 16 33 H 0.14 1.78 8.06 -52.48 -0.42 1.36 16 34 H 0.04 0.86 7.99 -51.93 -0.41 0.44 16 35 H 0.05 1.31 7.35 -51.93 -0.38 0.93 16 36 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.10 1.32 8.13 -51.93 -0.42 0.90 16 38 H 0.09 1.00 5.03 -51.93 -0.26 0.74 16 39 H 0.11 0.93 6.17 -51.92 -0.32 0.61 16 40 H 0.12 1.21 8.06 -51.93 -0.42 0.79 16 41 H 0.15 1.42 3.64 -52.48 -0.19 1.23 16 42 H 0.14 1.47 7.85 -52.49 -0.41 1.06 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -34.16 374.22 -5.31 -39.47 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -4.47 Total: -1.87 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -3.45 Total: 1.92 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 1.86 Total: -46.81 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.13 Total: -13.93 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.16 -5.31 -39.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344208830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.700 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds