Wall clock time and date at job start Sat Apr 11 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30472 * 126.18347 * 2 1 4 4 N 1.28671 * 109.51025 * 179.97438 * 3 2 1 5 5 C 1.31268 * 109.23510 * 0.02562 * 4 3 2 6 6 C 1.47745 * 126.37916 * 180.26817 * 5 4 3 7 7 C 1.39703 * 120.00218 * 179.41083 * 6 5 4 8 8 C 1.37620 * 120.00500 * 179.71738 * 7 6 5 9 9 C 1.39728 * 119.99632 * 0.55518 * 8 7 6 10 10 C 1.47733 * 120.00092 * 179.74087 * 9 8 7 11 11 O 1.21574 * 120.00025 * 314.28092 * 10 9 8 12 12 N 1.34771 * 119.99676 * 134.28502 * 10 9 8 13 13 C 1.46507 * 119.99677 * 185.90691 * 12 10 9 14 14 C 1.50694 * 109.47553 * 89.99580 * 13 12 10 15 15 H 1.08007 * 119.99929 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00218 * 179.97438 * 14 13 12 17 17 N 1.31506 * 119.99979 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99943 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47340 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46967 * 120.00090 * 18 16 14 21 21 H 1.48502 * 109.47109 * 240.00103 * 18 16 14 22 22 C 1.46498 * 120.00282 * 5.89884 * 12 10 9 23 23 C 1.53000 * 109.47185 * 98.13798 * 22 12 10 24 24 C 1.47192 * 109.47600 * 185.46485 * 23 22 12 25 25 N 8.65825 * 163.13904 * 294.18057 * 2 1 3 26 26 C 1.39724 * 119.99424 * 359.71726 * 9 8 7 27 27 C 1.37618 * 119.99992 * 0.02562 * 26 9 8 28 28 O 1.34339 * 126.18257 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47195 * 270.02184 * 1 2 3 30 30 H 1.08998 * 109.47186 * 30.02400 * 1 2 3 31 31 H 1.09001 * 109.46877 * 150.02783 * 1 2 3 32 32 H 1.08002 * 119.99451 * 0.02562 * 7 6 5 33 33 H 1.08003 * 120.00045 * 180.26578 * 8 7 6 34 34 H 1.09003 * 109.46530 * 209.99679 * 13 12 10 35 35 H 1.08999 * 109.47121 * 329.99233 * 13 12 10 36 36 H 0.97004 * 120.00540 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.46955 * 218.13316 * 22 12 10 38 38 H 1.09003 * 109.47255 * 338.13560 * 22 12 10 39 39 H 1.09011 * 109.46819 * 305.46441 * 23 22 12 40 40 H 1.09004 * 109.47202 * 65.45737 * 23 22 12 41 41 H 1.08004 * 119.99997 * 179.97438 * 26 9 8 42 42 H 1.07996 * 120.00485 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2772 1.0531 0.0000 4 7 3.5098 0.6839 0.0005 5 6 3.5685 -0.6275 0.0004 6 6 4.7960 -1.4497 0.0064 7 6 4.7030 -2.8436 0.0178 8 6 5.8463 -3.6096 0.0176 9 6 7.1002 -2.9932 0.0176 10 6 8.3276 -3.8154 0.0231 11 8 8.4221 -4.7615 0.7807 12 7 9.3426 -3.5165 -0.8117 13 6 10.5044 -4.4047 -0.8996 14 6 10.2649 -5.4410 -1.9672 15 1 9.3396 -5.4386 -2.5242 16 6 11.2270 -6.3922 -2.2328 17 7 12.3534 -6.3954 -1.5543 18 14 10.9297 -7.6772 -3.5557 19 1 9.5945 -7.4580 -4.1676 20 1 11.9778 -7.5625 -4.6015 21 1 10.9808 -9.0321 -2.9501 22 6 9.2841 -2.3036 -1.6313 23 6 10.0870 -1.1912 -0.9540 24 6 9.9213 0.0622 -1.7077 25 7 9.7930 1.0287 -2.2910 26 6 7.1932 -1.5990 0.0119 27 6 6.0498 -0.8332 0.0068 28 8 2.3000 -1.0843 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8903 -0.5134 32 1 3.7338 -3.3201 0.0218 33 1 5.7743 -4.6873 0.0221 34 1 11.3896 -3.8209 -1.1520 35 1 10.6568 -4.8996 0.0595 36 1 13.0305 -7.0644 -1.7414 37 1 9.7063 -2.5091 -2.6149 38 1 8.2463 -1.9882 -1.7399 39 1 9.7270 -1.0524 0.0656 40 1 11.1417 -1.4657 -0.9326 41 1 8.1623 -1.1224 0.0123 42 1 6.1215 0.2444 0.0020 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344208830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:09 Heat of formation + Delta-G solvation = 45.817019 kcal Electronic energy + Delta-G solvation = -28022.803322 eV Core-core repulsion = 23969.763320 eV Total energy + Delta-G solvation = -4053.040002 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.28197 -41.55370 -39.49638 -38.12629 -37.34404 -36.78521 -35.02363 -34.43275 -32.65120 -32.37692 -31.96630 -29.61185 -28.71475 -26.25627 -25.40436 -24.63399 -24.31320 -23.08285 -22.95723 -20.54980 -19.14664 -18.85571 -18.57971 -18.41281 -18.05871 -17.54310 -17.32503 -16.52155 -16.26232 -16.17290 -15.72134 -15.42511 -15.24183 -14.91986 -14.50506 -14.44014 -14.39624 -14.15927 -13.89581 -13.79813 -13.61459 -13.60349 -13.52511 -13.33370 -13.12105 -13.04932 -12.97383 -12.71340 -12.52447 -12.36150 -12.15725 -12.06804 -11.92135 -11.64537 -11.27324 -10.79711 -10.57630 -10.16147 -9.71052 -9.53289 -8.17315 -6.29090 -0.87285 0.19552 0.38380 1.05743 1.22118 1.41366 1.44056 1.53916 1.65648 1.79059 1.81792 2.18489 2.44574 2.60143 2.64532 3.03002 3.15409 3.26381 3.52352 3.60620 3.75612 3.91447 4.00100 4.03818 4.04048 4.12647 4.30370 4.32151 4.42564 4.57220 4.57596 4.70364 4.78086 4.86087 4.96735 5.02491 5.04923 5.09474 5.14385 5.26338 5.35615 5.54246 5.59396 5.84778 6.12411 6.56908 6.61618 6.79896 7.10289 7.23684 7.43073 8.89782 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013574 B = 0.002716 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.294255 B =10307.380849 C =11523.355901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.177 3.823 3 N -0.326 5.326 4 N -0.299 5.299 5 C 0.205 3.795 6 C -0.020 4.020 7 C -0.073 4.073 8 C -0.076 4.076 9 C -0.099 4.099 10 C 0.547 3.453 11 O -0.575 6.575 12 N -0.585 5.585 13 C 0.256 3.744 14 C -0.541 4.541 15 H 0.054 0.946 16 C 0.014 3.986 17 N -0.923 5.923 18 Si 0.956 3.044 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.285 1.285 22 C 0.102 3.898 23 C -0.047 4.047 24 C 0.241 3.759 25 N -0.477 5.477 26 C -0.096 4.096 27 C -0.067 4.067 28 O -0.221 6.221 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.159 0.841 33 H 0.140 0.860 34 H 0.044 0.956 35 H 0.011 0.989 36 H 0.266 0.734 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.162 0.838 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.556 11.405 3.058 23.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.033 4.033 3 N -0.173 5.173 4 N -0.145 5.145 5 C -0.003 4.003 6 C -0.022 4.022 7 C -0.092 4.092 8 C -0.095 4.095 9 C -0.103 4.103 10 C 0.335 3.665 11 O -0.456 6.456 12 N -0.314 5.314 13 C 0.136 3.864 14 C -0.580 4.580 15 H 0.073 0.927 16 C -0.186 4.186 17 N -0.563 5.563 18 Si 0.782 3.218 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.211 1.211 22 C -0.023 4.023 23 C -0.087 4.087 24 C -0.076 4.076 25 N -0.155 5.155 26 C -0.114 4.114 27 C -0.086 4.086 28 O -0.101 6.101 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.177 0.823 33 H 0.158 0.842 34 H 0.062 0.938 35 H 0.029 0.971 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.179 0.821 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -20.167 13.541 2.576 24.428 hybrid contribution 0.155 -2.520 -0.359 2.551 sum -20.013 11.021 2.218 22.954 Atomic orbital electron populations 1.20792 0.76067 1.07562 1.07201 1.29197 0.99443 0.78406 0.96226 1.74403 0.96111 1.26899 1.19851 1.74676 1.12970 1.09034 1.17868 1.25520 0.84075 0.90245 1.00458 1.17460 0.86755 0.91742 1.06214 1.21262 0.99832 0.91108 0.97017 1.21178 0.90193 1.01194 0.96909 1.20204 0.93428 0.94507 1.02153 1.18701 0.83613 0.83903 0.80235 1.90775 1.81598 1.31742 1.41442 1.48002 1.19890 1.23739 1.39793 1.18950 0.82987 0.88457 0.96015 1.21747 1.02518 1.14064 1.19633 0.92726 1.25681 0.94897 0.99463 0.98541 1.70016 1.07799 1.36441 1.42034 0.85528 0.78407 0.78779 0.79069 1.19201 1.20035 1.21097 1.21780 1.02357 0.82873 0.95271 1.19963 1.05973 0.84038 0.98771 1.28977 0.91904 0.93943 0.92791 1.81277 1.10273 1.13313 1.10621 1.21758 1.00403 0.91282 0.97970 1.21171 0.89448 1.01431 0.96536 1.84836 1.16800 1.38434 1.70061 0.85993 0.86079 0.86541 0.82306 0.84231 0.93822 0.97085 0.92531 0.89018 0.87871 0.84663 0.84914 0.82063 0.82949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 71.23 0.75 0.48 16 2 C 0.18 3.00 8.47 88.31 0.75 3.75 16 3 N -0.33 -7.86 12.22 -165.33 -2.02 -9.88 16 4 N -0.30 -7.91 11.91 -166.33 -1.98 -9.89 16 5 C 0.21 4.72 7.98 87.29 0.70 5.42 16 6 C -0.02 -0.42 5.88 -20.05 -0.12 -0.54 16 7 C -0.07 -1.44 9.70 22.48 0.22 -1.22 16 8 C -0.08 -1.85 9.67 22.48 0.22 -1.63 16 9 C -0.10 -2.68 5.09 -20.05 -0.10 -2.78 16 10 C 0.55 19.99 7.26 86.75 0.63 20.62 16 11 O -0.58 -26.79 16.54 -3.95 -0.07 -26.85 16 12 N -0.59 -20.68 2.46 -829.69 -2.04 -22.73 16 13 C 0.26 11.87 5.22 85.63 0.45 12.32 16 14 C -0.54 -28.16 9.39 25.60 0.24 -27.92 16 15 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 16 C 0.01 0.73 5.46 84.66 0.46 1.20 16 17 N -0.92 -51.91 13.28 21.44 0.28 -51.62 16 18 Si 0.96 42.40 29.54 68.60 2.03 44.43 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 C 0.10 2.53 4.83 86.38 0.42 2.95 16 23 C -0.05 -0.87 5.10 28.79 0.15 -0.72 16 24 C 0.24 5.21 15.38 89.44 1.38 6.59 16 25 N -0.48 -13.07 18.54 20.00 0.37 -12.70 16 26 C -0.10 -2.02 7.38 22.48 0.17 -1.85 16 27 C -0.07 -1.35 9.68 22.48 0.22 -1.13 16 28 O -0.22 -4.34 10.65 -8.00 -0.09 -4.42 16 29 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.16 2.37 7.92 -2.91 -0.02 2.35 16 33 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 34 H 0.04 1.96 7.99 -2.39 -0.02 1.94 16 35 H 0.01 0.60 7.35 -2.39 -0.02 0.58 16 36 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 37 H 0.09 2.41 8.13 -2.39 -0.02 2.39 16 38 H 0.10 2.23 5.03 -2.39 -0.01 2.22 16 39 H 0.14 1.92 6.17 -2.38 -0.01 1.91 16 40 H 0.13 2.35 8.06 -2.38 -0.02 2.33 16 41 H 0.16 2.76 3.64 -2.91 -0.01 2.75 16 42 H 0.15 2.84 7.85 -2.91 -0.02 2.82 16 Total: -1.00 -76.68 374.22 4.09 -72.60 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: 1.09 Total: 5.54 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 6.51 Total: 15.53 kcal Atomic # 7 Polarization: -101.44 SS G_CDS: -5.39 Total: -106.83 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.15 Total: -31.27 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -76.68 4.09 -72.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344208830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.413 kcal (2) G-P(sol) polarization free energy of solvation -76.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds