Wall clock time and date at job start Sat Apr 11 2020 05:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35346 * 125.69160 * 2 1 4 4 N 1.36157 * 107.14167 * 179.89906 * 3 2 1 5 5 C 1.36219 * 133.92918 * 180.08542 * 4 3 2 6 6 C 1.35489 * 120.52605 * 180.34257 * 5 4 3 7 7 N 1.32689 * 122.11219 * 359.95278 * 6 5 4 8 8 C 1.32293 * 121.18982 * 0.03003 * 7 6 5 9 9 C 1.47800 * 120.59344 * 179.97438 * 8 7 6 10 10 O 1.21562 * 120.00178 * 173.98089 * 9 8 7 11 11 N 1.34775 * 119.99577 * 353.98264 * 9 8 7 12 12 C 1.46502 * 120.00355 * 3.69623 * 11 9 8 13 13 C 1.50699 * 109.46921 * 82.90929 * 12 11 9 14 14 H 1.07999 * 119.99868 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00108 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00079 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00037 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47283 * 89.99695 * 17 15 13 19 19 H 1.48503 * 109.46926 * 209.99249 * 17 15 13 20 20 H 1.48498 * 109.46904 * 329.99460 * 17 15 13 21 21 C 1.46506 * 119.99840 * 183.70397 * 11 9 8 22 22 C 1.50702 * 109.47291 * 89.99590 * 21 11 9 23 23 C 1.34508 * 125.78806 * 89.71744 * 22 21 11 24 24 C 1.41388 * 106.84004 * 179.89014 * 23 22 21 25 25 C 1.34519 * 106.83747 * 0.37132 * 24 23 22 26 26 O 1.34298 * 108.42044 * 359.77356 * 25 24 23 27 27 C 1.37571 * 106.99572 * 0.36137 * 4 3 2 28 28 N 1.31854 * 108.10387 * 359.77161 * 27 4 3 29 29 H 1.09005 * 109.46990 * 269.71319 * 1 2 3 30 30 H 1.09000 * 109.47169 * 149.71353 * 1 2 3 31 31 H 1.08998 * 109.47418 * 29.71183 * 1 2 3 32 32 H 1.08000 * 126.43014 * 0.04145 * 3 2 1 33 33 H 1.07997 * 119.73883 * 0.32255 * 5 4 3 34 34 H 1.07997 * 118.94320 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47172 * 202.90700 * 12 11 9 36 36 H 1.08996 * 109.46789 * 322.90782 * 12 11 9 37 37 H 0.96999 * 120.00233 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.46882 * 209.99775 * 21 11 9 39 39 H 1.09006 * 109.46900 * 329.99635 * 21 11 9 40 40 H 1.08002 * 126.58120 * 0.02562 * 23 22 21 41 41 H 1.07994 * 126.58168 * 180.16280 * 24 23 22 42 42 H 1.08001 * 125.78830 * 179.75297 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2967 1.0992 0.0000 4 7 3.5875 0.6661 0.0023 5 6 4.7955 1.2955 0.0048 6 6 5.9451 0.5785 -0.0002 7 7 5.9488 -0.7484 -0.0069 8 6 4.8190 -1.4366 -0.0094 9 6 4.8385 -2.9145 -0.0174 10 8 3.7998 -3.5367 0.0907 11 7 6.0080 -3.5722 -0.1444 12 6 7.2672 -2.8250 -0.1932 13 6 7.7150 -2.5033 1.2093 14 1 7.1208 -2.8230 2.0525 15 6 8.8826 -1.7999 1.4159 16 7 9.6059 -1.4101 0.3890 17 14 9.4380 -1.4016 3.1544 18 1 10.3011 -2.4984 3.6618 19 1 10.2050 -0.1300 3.1499 20 1 8.2496 -1.2600 4.0334 21 6 6.0200 -5.0345 -0.2340 22 6 5.9185 -5.4502 -1.6790 23 6 6.9535 -5.6482 -2.5150 24 6 6.4058 -6.0275 -3.7621 25 6 5.0686 -6.0307 -3.6157 26 8 4.7793 -5.6802 -2.3519 27 6 3.5502 -0.7091 -0.0046 28 7 2.2863 -1.0847 -0.0059 29 1 -0.3633 -0.0051 1.0277 30 1 -0.3633 -0.8874 -0.5183 31 1 -0.3634 0.8925 -0.5093 32 1 1.9651 2.1271 0.0006 33 1 4.8373 2.3747 0.0106 34 1 6.8887 1.1038 0.0015 35 1 8.0285 -3.4279 -0.6884 36 1 7.1189 -1.8991 -0.7488 37 1 10.4276 -0.9155 0.5343 38 1 6.9486 -5.4168 0.1898 39 1 5.1736 -5.4394 0.3209 40 1 8.0017 -5.5403 -2.2785 41 1 6.9554 -6.2655 -4.6608 42 1 4.3497 -6.2735 -4.3842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345831941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:25 Heat of formation + Delta-G solvation = 116.764814 kcal Electronic energy + Delta-G solvation = -29640.583493 eV Core-core repulsion = 25590.620018 eV Total energy + Delta-G solvation = -4049.963475 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.73446 -42.13914 -39.22970 -37.87422 -35.15988 -34.13528 -32.71658 -32.44001 -31.61065 -30.50576 -29.27757 -27.78559 -27.19672 -25.84525 -24.02222 -22.96473 -22.79167 -21.30039 -20.77252 -20.34461 -19.37669 -17.98725 -17.36349 -17.06933 -16.38638 -15.98314 -15.86697 -15.54093 -15.21209 -15.09039 -14.55979 -14.41228 -14.08182 -13.89543 -13.47524 -13.28127 -13.01201 -12.71575 -12.49038 -12.42139 -12.37601 -12.24261 -12.10825 -11.98683 -11.54571 -11.29133 -11.01327 -10.91537 -10.80049 -10.21549 -9.87051 -9.75611 -9.53685 -9.41243 -8.89208 -8.55395 -8.37894 -8.09679 -7.92028 -7.74917 -6.07323 -4.06476 0.45988 1.52316 2.05150 2.56498 2.93894 2.98569 3.16311 3.24546 3.31949 3.36481 3.46141 3.69075 4.17588 4.25138 4.37200 4.51233 4.51904 4.81406 5.10261 5.16703 5.25305 5.28716 5.34271 5.38272 5.39530 5.49696 5.66331 5.71891 5.80176 5.98644 6.05117 6.07038 6.14813 6.30076 6.35370 6.45931 6.70712 6.72688 6.87231 7.00467 7.46730 7.54743 7.69840 7.84952 7.95093 8.11012 8.22201 8.24834 8.84394 8.98001 9.53078 11.00228 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007098 B = 0.005985 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3943.706997 B = 4677.103313 C = 7747.685058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.048 3.952 3 C -0.097 4.097 4 N -0.354 5.354 5 C 0.008 3.992 6 C 0.041 3.959 7 N -0.348 5.348 8 C 0.165 3.835 9 C 0.573 3.427 10 O -0.526 6.526 11 N -0.573 5.573 12 C 0.225 3.775 13 C -0.501 4.501 14 H 0.054 0.946 15 C 0.070 3.930 16 N -0.887 5.887 17 Si 0.884 3.116 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.195 3.805 22 C -0.017 4.017 23 C -0.200 4.200 24 C -0.217 4.217 25 C -0.051 4.051 26 O -0.166 6.166 27 C 0.203 3.797 28 N -0.442 5.442 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.183 0.817 33 H 0.168 0.832 34 H 0.182 0.818 35 H 0.030 0.970 36 H 0.084 0.916 37 H 0.261 0.739 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.149 0.851 41 H 0.143 0.857 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.012 3.337 -5.083 10.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.086 4.086 3 C -0.230 4.230 4 N -0.027 5.027 5 C -0.117 4.117 6 C -0.099 4.099 7 N -0.062 5.062 8 C 0.000 4.000 9 C 0.358 3.642 10 O -0.401 6.401 11 N -0.303 5.303 12 C 0.106 3.894 13 C -0.540 4.540 14 H 0.072 0.928 15 C -0.132 4.132 16 N -0.527 5.527 17 Si 0.713 3.287 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.202 1.202 21 C 0.071 3.929 22 C -0.068 4.068 23 C -0.220 4.220 24 C -0.237 4.237 25 C -0.120 4.120 26 O -0.061 6.061 27 C -0.045 4.045 28 N -0.163 5.163 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.200 0.800 33 H 0.185 0.815 34 H 0.199 0.801 35 H 0.048 0.952 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.133 0.867 39 H 0.112 0.888 40 H 0.167 0.833 41 H 0.161 0.839 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.079 2.148 -4.933 10.553 hybrid contribution 0.440 1.937 0.783 2.135 sum -8.639 4.085 -4.151 10.418 Atomic orbital electron populations 1.20103 0.86849 1.03006 1.02653 1.21176 0.97054 0.87961 1.02371 1.22311 0.80667 1.01001 1.19045 1.42744 1.06111 1.09019 1.44845 1.22741 0.83319 1.00333 1.05262 1.22541 0.97236 0.90607 0.99470 1.69371 1.24459 1.06900 1.05496 1.22233 0.83496 0.95195 0.99033 1.17255 0.84060 0.84572 0.78309 1.90810 1.32165 1.67058 1.50096 1.48237 1.08541 1.05244 1.68326 1.20195 0.77931 0.92917 0.98341 1.21315 1.06348 1.34440 0.91918 0.92789 1.24749 0.96399 0.95696 0.96335 1.69930 1.14869 1.38510 1.29364 0.86720 0.78708 0.77877 0.85432 1.20670 1.21261 1.20191 1.19785 1.04775 0.81705 0.86598 1.23193 0.83122 1.03880 0.96650 1.21669 1.00177 1.06985 0.93167 1.21785 0.94265 1.08197 0.99427 1.23962 0.97022 1.05475 0.85494 1.84113 1.34188 1.66314 1.21500 1.22630 0.94633 0.80287 1.06949 1.70553 0.97914 1.28325 1.19492 0.90859 0.90565 0.91056 0.80020 0.81482 0.80112 0.95195 0.89886 0.92962 0.86680 0.88847 0.83282 0.83898 0.78740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.42 36.01 0.38 -0.37 16 2 C 0.05 0.76 7.07 -82.87 -0.59 0.17 16 3 C -0.10 -1.34 11.70 -16.66 -0.19 -1.53 16 4 N -0.35 -5.79 2.95 -61.12 -0.18 -5.97 16 5 C 0.01 0.12 11.00 -16.59 -0.18 -0.06 16 6 C 0.04 0.69 11.01 -18.16 -0.20 0.49 16 7 N -0.35 -7.23 5.23 -8.68 -0.05 -7.28 16 8 C 0.17 3.60 6.83 -80.54 -0.55 3.05 16 9 C 0.57 13.21 7.59 -12.35 -0.09 13.12 16 10 O -0.53 -12.96 15.81 5.31 0.08 -12.88 16 11 N -0.57 -12.49 2.46 -177.56 -0.44 -12.93 16 12 C 0.23 5.28 4.77 -5.19 -0.02 5.26 16 13 C -0.50 -12.62 8.09 -34.44 -0.28 -12.90 16 14 H 0.05 1.42 7.81 -52.49 -0.41 1.01 16 15 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -23.19 13.29 55.43 0.74 -22.46 16 17 Si 0.88 20.13 29.54 -169.99 -5.02 15.11 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C 0.19 3.67 5.93 -5.19 -0.03 3.64 16 22 C -0.02 -0.31 6.90 -35.63 -0.25 -0.55 16 23 C -0.20 -3.36 10.81 -39.70 -0.43 -3.79 16 24 C -0.22 -3.21 10.91 -39.70 -0.43 -3.65 16 25 C -0.05 -0.75 12.09 29.42 0.36 -0.40 16 26 O -0.17 -3.08 10.65 5.72 0.06 -3.02 16 27 C 0.20 4.14 7.66 -153.98 -1.18 2.96 16 28 N -0.44 -9.02 10.75 -7.53 -0.08 -9.10 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.18 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.18 2.62 8.06 -52.49 -0.42 2.20 16 35 H 0.03 0.73 8.02 -51.93 -0.42 0.31 16 36 H 0.08 2.05 5.20 -52.23 -0.27 1.78 16 37 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 38 H 0.12 1.96 8.07 -51.93 -0.42 1.54 16 39 H 0.09 1.75 7.37 -51.93 -0.38 1.36 16 40 H 0.15 2.38 8.06 -52.49 -0.42 1.95 16 41 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 42 H 0.20 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 367.78 15.07 5.54 5.54 Total: -1.00 -33.47 367.78 -7.98 -41.44 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -4.84 Total: 4.43 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -3.80 Total: 7.10 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.01 Total: -57.73 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.14 Total: -15.89 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.47 -7.98 -41.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345831941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.209 kcal (2) G-P(sol) polarization free energy of solvation -33.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds